BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-17-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
stu-miR8048-3p MIMAT0030972 Solanum tuberosum miR8048-3p 14 20
gga-miR-6572-3p MIMAT0025652 Gallus gallus miR-6572-3p 14 20
rlcv-miR-rL1-17-5p MIMAT0019185 Rhesus lymphocryptovirus miR-rL1... 14 20
oan-miR-1400-5p MIMAT0007205 Ornithorhynchus anatinus miR-1400-5p 14 20
cre-miR1170.1 MIMAT0005429 Chlamydomonas reinhardtii miR1170.1 14 20
eca-miR-8930 MIMAT0034458 Equus caballus miR-8930 12 80
gra-miR7494d MIMAT0034168 Gossypium raimondii miR7494d 12 80
gra-miR8714 MIMAT0034103 Gossypium raimondii miR8714 12 80
ppc-miR-8360-3p MIMAT0033283 Pristionchus pacificus miR-8360-3p 12 80
stu-miR8035 MIMAT0030945 Solanum tuberosum miR8035 12 80
stu-miR7980b-3p MIMAT0030930 Solanum tuberosum miR7980b-3p 12 80
prd-miR-7917-5p MIMAT0030670 Panagrellus redivivus miR-7917-5p 12 80
bta-miR-7863 MIMAT0030445 Bos taurus miR-7863 12 80
bdi-miR7717a-3p MIMAT0030157 Brachypodium distachyon miR7717a-3p 12 80
oan-miR-7408-3p MIMAT0028963 Ornithorhynchus anatinus miR-7408-3p 12 80
mdo-miR-7357-5p MIMAT0028726 Monodelphis domestica miR-7357-5p 12 80
mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p 12 80
hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p 12 80
mmu-miR-7093-3p MIMAT0028093 Mus musculus miR-7093-3p 12 80
cca-miR6109 MIMAT0024546 Cynara cardunculus miR6109 12 80
hhv6b-miR-Ro6-4-5p MIMAT0026462 Human herpesvirus miR-Ro6-4-5p 12 80
osa-miR5802 MIMAT0023271 Oryza sativa miR5802 12 80
pma-miR-4628 MIMAT0019662 Petromyzon marinus miR-4628 12 80
pma-miR-4548 MIMAT0019580 Petromyzon marinus miR-4548 12 80
hsa-miR-3912-5p MIMAT0027036 Homo sapiens miR-3912-5p 12 80
esi-miR3454d-3p MIMAT0017784 Ectocarpus siliculosus miR3454d-3p 12 80
esi-miR3454e-3p MIMAT0017770 Ectocarpus siliculosus miR3454e-3p 12 80
esi-miR3454c-3p MIMAT0017752 Ectocarpus siliculosus miR3454c-3p 12 80
esi-miR3454a-3p MIMAT0017748 Ectocarpus siliculosus miR3454a-3p 12 80
esi-miR3454g-3p MIMAT0017746 Ectocarpus siliculosus miR3454g-3p 12 80
aly-miR861-3p MIMAT0017652 Arabidopsis lyrata miR861-3p 12 80
aly-miR842-5p MIMAT0017627 Arabidopsis lyrata miR842-5p 12 80
bmo-miR-3343 MIMAT0015530 Bombyx mori miR-3343 12 80
bmo-miR-3206 MIMAT0015384 Bombyx mori miR-3206 12 80
mdv2-miR-M32-5p MIMAT0012732 Mareks disease miR-M32-5p 12 80
cel-miR-2211-5p MIMAT0011437 Caenorhabditis elegans miR-2211-5p 12 80
sme-miR-2171 MIMAT0011271 Schmidtea mediterranea miR-2171 12 80
mmu-miR-1969 MIMAT0009442 Mus musculus miR-1969 12 80
gma-miR1531-3p MIMAT0007393 Glycine max miR1531-3p 12 80
gma-miR1531-5p MIMAT0032033 Glycine max miR1531-5p 12 80
cre-miR1166.2 MIMAT0005423 Chlamydomonas reinhardtii miR1166.2 12 80
mdv2-miR-M15-5p MIMAT0004453 Mareks disease miR-M15-5p 12 80
ath-miR861-3p MIMAT0004306 Arabidopsis thaliana miR861-3p 12 80
sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p 12 80
hsv1-miR-H1-5p MIMAT0003744 Herpes Simplex miR-H1-5p 12 80
rno-miR-141-5p MIMAT0017128 Rattus norvegicus miR-141-5p 12 80
>stu-miR8048-3p MIMAT0030972 Solanum tuberosum miR8048-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggac 7
|||||||
Sbjct: 2 gatggac 8
>gga-miR-6572-3p MIMAT0025652 Gallus gallus miR-6572-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggac 7
|||||||
Sbjct: 2 gatggac 8
>rlcv-miR-rL1-17-5p MIMAT0019185 Rhesus lymphocryptovirus
miR-rL1-17-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggac 7
|||||||
Sbjct: 2 gatggac 8
>oan-miR-1400-5p MIMAT0007205 Ornithorhynchus anatinus
miR-1400-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggac 7
|||||||
Sbjct: 1 gatggac 7
>cre-miR1170.1 MIMAT0005429 Chlamydomonas reinhardtii miR1170.1
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggac 7
|||||||
Sbjct: 8 gatggac 2
>eca-miR-8930 MIMAT0034458 Equus caballus miR-8930
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>gra-miR7494d MIMAT0034168 Gossypium raimondii miR7494d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggac 7
||||||
Sbjct: 3 atggac 8
>gra-miR8714 MIMAT0034103 Gossypium raimondii miR8714
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggac 7
||||||
Sbjct: 1 atggac 6
>ppc-miR-8360-3p MIMAT0033283 Pristionchus pacificus miR-8360-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggac 7
||||||
Sbjct: 7 atggac 2
>stu-miR8035 MIMAT0030945 Solanum tuberosum miR8035
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 6 gatgga 1
>stu-miR7980b-3p MIMAT0030930 Solanum tuberosum miR7980b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 3 gatgga 8
>prd-miR-7917-5p MIMAT0030670 Panagrellus redivivus miR-7917-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggac 7
||||||
Sbjct: 8 atggac 3
>bta-miR-7863 MIMAT0030445 Bos taurus miR-7863
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggac 7
||||||
Sbjct: 1 atggac 6
>bdi-miR7717a-3p MIMAT0030157 Brachypodium distachyon
miR7717a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 1 gatgga 6
>oan-miR-7408-3p MIMAT0028963 Ornithorhynchus anatinus
miR-7408-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>mdo-miR-7357-5p MIMAT0028726 Monodelphis domestica miR-7357-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 1 gatgga 6
>mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 6 gatgga 1
>hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>mmu-miR-7093-3p MIMAT0028093 Mus musculus miR-7093-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>cca-miR6109 MIMAT0024546 Cynara cardunculus miR6109
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggac 7
||||||
Sbjct: 1 atggac 6
>hhv6b-miR-Ro6-4-5p MIMAT0026462 Human herpesvirus miR-Ro6-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 3 gatgga 8
>osa-miR5802 MIMAT0023271 Oryza sativa miR5802
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggac 7
||||||
Sbjct: 1 atggac 6
>pma-miR-4628 MIMAT0019662 Petromyzon marinus miR-4628
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggac 7
||||||
Sbjct: 8 atggac 3
>pma-miR-4548 MIMAT0019580 Petromyzon marinus miR-4548
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 6 gatgga 1
>hsa-miR-3912-5p MIMAT0027036 Homo sapiens miR-3912-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggac 7
||||||
Sbjct: 8 atggac 3
>esi-miR3454d-3p MIMAT0017784 Ectocarpus siliculosus miR3454d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>esi-miR3454e-3p MIMAT0017770 Ectocarpus siliculosus miR3454e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>esi-miR3454c-3p MIMAT0017752 Ectocarpus siliculosus miR3454c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>esi-miR3454a-3p MIMAT0017748 Ectocarpus siliculosus miR3454a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>esi-miR3454g-3p MIMAT0017746 Ectocarpus siliculosus miR3454g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>aly-miR861-3p MIMAT0017652 Arabidopsis lyrata miR861-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 1 gatgga 6
>aly-miR842-5p MIMAT0017627 Arabidopsis lyrata miR842-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 3 gatgga 8
>bmo-miR-3343 MIMAT0015530 Bombyx mori miR-3343
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>bmo-miR-3206 MIMAT0015384 Bombyx mori miR-3206
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>mdv2-miR-M32-5p MIMAT0012732 Mareks disease miR-M32-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>cel-miR-2211-5p MIMAT0011437 Caenorhabditis elegans miR-2211-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>sme-miR-2171 MIMAT0011271 Schmidtea mediterranea miR-2171
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 3 gatgga 8
>mmu-miR-1969 MIMAT0009442 Mus musculus miR-1969
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 3 gatgga 8
>gma-miR1531-3p MIMAT0007393 Glycine max miR1531-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggac 7
||||||
Sbjct: 8 atggac 3
>gma-miR1531-5p MIMAT0032033 Glycine max miR1531-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggac 7
||||||
Sbjct: 3 atggac 8
>cre-miR1166.2 MIMAT0005423 Chlamydomonas reinhardtii miR1166.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggac 7
||||||
Sbjct: 8 atggac 3
>mdv2-miR-M15-5p MIMAT0004453 Mareks disease miR-M15-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 1 gatgga 6
>ath-miR861-3p MIMAT0004306 Arabidopsis thaliana miR861-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 1 gatgga 6
>sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>hsv1-miR-H1-5p MIMAT0003744 Herpes Simplex miR-H1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 1 gatgga 6
>rno-miR-141-5p MIMAT0017128 Rattus norvegicus miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 6 gatgga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 74
Number of extensions: 69
Number of successful extensions: 46
Number of sequences better than 100.0: 46
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 46
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
