BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-5-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
str-miR-7880n-5p MIMAT0033368 Strongyloides ratti miR-7880n-5p 14 20
bdi-miR7717a-3p MIMAT0030157 Brachypodium distachyon miR7717a-3p 14 20
hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p 14 20
aly-miR861-3p MIMAT0017652 Arabidopsis lyrata miR861-3p 14 20
bmo-miR-3206 MIMAT0015384 Bombyx mori miR-3206 14 20
hsa-miR-3134 MIMAT0015000 Homo sapiens miR-3134 14 20
dps-miR-2527 MIMAT0012317 Drosophila pseudoobscura miR-2527 14 20
ath-miR861-3p MIMAT0004306 Arabidopsis thaliana miR861-3p 14 20
sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p 14 20
oha-miR-490-5p MIMAT0036936 Ophiophagus hannah miR-490-5p 12 80
gsa-miR-9391-5p MIMAT0035326 Gyrodactylus salaris miR-9391-5p 12 80
eca-miR-8930 MIMAT0034458 Equus caballus miR-8930 12 80
atr-miR8596 MIMAT0033885 Amborella trichopoda miR8596 12 80
pxy-miR-8504 MIMAT0033716 Plutella xylostella miR-8504 12 80
str-miR-8384-5p MIMAT0033428 Strongyloides ratti miR-8384-5p 12 80
ath-miR8172 MIMAT0032771 Arabidopsis thaliana miR8172 12 80
stu-miR8035 MIMAT0030945 Solanum tuberosum miR8035 12 80
stu-miR7980b-3p MIMAT0030930 Solanum tuberosum miR7980b-3p 12 80
oan-miR-7408-3p MIMAT0028963 Ornithorhynchus anatinus miR-7408-3p 12 80
mdo-miR-7386j-5p MIMAT0028846 Monodelphis domestica miR-7386j-5p 12 80
mdo-miR-7357-5p MIMAT0028726 Monodelphis domestica miR-7357-5p 12 80
mdo-miR-7273-3p MIMAT0028521 Monodelphis domestica miR-7273-3p 12 80
mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p 12 80
mml-miR-7182-3p MIMAT0028311 Macaca mulatta miR-7182-3p 12 80
dev-miR-D21-3p MIMAT0028197 Duck enteritis miR-D21-3p 12 80
mmu-miR-7093-3p MIMAT0028093 Mus musculus miR-7093-3p 12 80
mmu-miR-6906-5p MIMAT0027712 Mus musculus miR-6906-5p 12 80
bta-miR-1246 MIMAT0024567 Bos taurus miR-1246 12 80
hhv6b-miR-Ro6-4-5p MIMAT0026462 Human herpesvirus miR-Ro6-4-5p 12 80
aca-miR-490-5p MIMAT0021976 Anolis carolinensis miR-490-5p 12 80
asu-miR-36f-5p MIMAT0021546 Ascaris suum miR-36f-5p 12 80
mtr-miR5256 MIMAT0021254 Medicago truncatula miR5256 12 80
bdi-miR5181a-5p MIMAT0020730 Brachypodium distachyon miR5181a-5p 12 80
pma-miR-4548 MIMAT0019580 Petromyzon marinus miR-4548 12 80
ssc-miR-490-5p MIMAT0017959 Sus scrofa miR-490-5p 12 80
ppy-miR-490-5p MIMAT0015909 Pongo pygmaeus miR-490-5p 12 80
esi-miR3454d-3p MIMAT0017784 Ectocarpus siliculosus miR3454d-3p 12 80
esi-miR3454e-3p MIMAT0017770 Ectocarpus siliculosus miR3454e-3p 12 80
esi-miR3454c-3p MIMAT0017752 Ectocarpus siliculosus miR3454c-3p 12 80
esi-miR3454a-3p MIMAT0017748 Ectocarpus siliculosus miR3454a-3p 12 80
esi-miR3454g-3p MIMAT0017746 Ectocarpus siliculosus miR3454g-3p 12 80
aly-miR842-5p MIMAT0017627 Arabidopsis lyrata miR842-5p 12 80
bmo-miR-3343 MIMAT0015530 Bombyx mori miR-3343 12 80
tgu-miR-490-5p MIMAT0026996 Taeniopygia guttata miR-490-5p 12 80
eca-miR-490-5p MIMAT0012944 Equus caballus miR-490-5p 12 80
rno-miR-490-5p MIMAT0017356 Rattus norvegicus miR-490-5p 12 80
mdv2-miR-M32-5p MIMAT0012732 Mareks disease miR-M32-5p 12 80
bta-miR-2392 MIMAT0011945 Bos taurus miR-2392 12 80
crm-miR-2228 MIMAT0011625 Caenorhabditis remanei miR-2228 12 80
cel-miR-2211-5p MIMAT0011437 Caenorhabditis elegans miR-2211-5p 12 80
sme-miR-2171 MIMAT0011271 Schmidtea mediterranea miR-2171 12 80
mtr-miR1510b-5p MIMAT0010028 Medicago truncatula miR1510b-5p 12 80
mmu-miR-1969 MIMAT0009442 Mus musculus miR-1969 12 80
ptr-miR-1246 MIMAT0007972 Pan troglodytes miR-1246 12 80
osa-miR1852 MIMAT0007772 Oryza sativa miR1852 12 80
mml-miR-490-5p MIMAT0006350 Macaca mulatta miR-490-5p 12 80
oan-miR-1422b-2-5p MIMAT0009175 Ornithorhynchus anatinus miR-142... 12 80
oan-miR-1400-5p MIMAT0007205 Ornithorhynchus anatinus miR-1400-5p 12 80
oan-miR-1422c-5p MIMAT0006891 Ornithorhynchus anatinus miR-1422c-5p 12 80
oan-miR-490-5p MIMAT0006810 Ornithorhynchus anatinus miR-490-5p 12 80
hsa-miR-1261 MIMAT0005913 Homo sapiens miR-1261 12 80
hsa-miR-1246 MIMAT0005898 Homo sapiens miR-1246 12 80
cre-miR1170.1 MIMAT0005429 Chlamydomonas reinhardtii miR1170.1 12 80
mdv2-miR-M15-5p MIMAT0004453 Mareks disease miR-M15-5p 12 80
mmu-miR-490-5p MIMAT0017261 Mus musculus miR-490-5p 12 80
hsv1-miR-H1-5p MIMAT0003744 Herpes Simplex miR-H1-5p 12 80
gga-miR-490-5p MIMAT0026633 Gallus gallus miR-490-5p 12 80
hsa-miR-490-5p MIMAT0004764 Homo sapiens miR-490-5p 12 80
rno-miR-141-5p MIMAT0017128 Rattus norvegicus miR-141-5p 12 80
>str-miR-7880n-5p MIMAT0033368 Strongyloides ratti miR-7880n-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggat 7
|||||||
Sbjct: 2 gatggat 8
>bdi-miR7717a-3p MIMAT0030157 Brachypodium distachyon
miR7717a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggat 7
|||||||
Sbjct: 1 gatggat 7
>hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggat 7
|||||||
Sbjct: 8 gatggat 2
>aly-miR861-3p MIMAT0017652 Arabidopsis lyrata miR861-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggat 7
|||||||
Sbjct: 1 gatggat 7
>bmo-miR-3206 MIMAT0015384 Bombyx mori miR-3206
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggat 7
|||||||
Sbjct: 8 gatggat 2
>hsa-miR-3134 MIMAT0015000 Homo sapiens miR-3134
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggat 7
|||||||
Sbjct: 2 gatggat 8
>dps-miR-2527 MIMAT0012317 Drosophila pseudoobscura miR-2527
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggat 7
|||||||
Sbjct: 2 gatggat 8
>ath-miR861-3p MIMAT0004306 Arabidopsis thaliana miR861-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggat 7
|||||||
Sbjct: 1 gatggat 7
>sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggat 7
|||||||
Sbjct: 8 gatggat 2
>oha-miR-490-5p MIMAT0036936 Ophiophagus hannah miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>gsa-miR-9391-5p MIMAT0035326 Gyrodactylus salaris miR-9391-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggat 7
||||||
Sbjct: 6 atggat 1
>eca-miR-8930 MIMAT0034458 Equus caballus miR-8930
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>atr-miR8596 MIMAT0033885 Amborella trichopoda miR8596
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>pxy-miR-8504 MIMAT0033716 Plutella xylostella miR-8504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggat 7
||||||
Sbjct: 8 atggat 3
>str-miR-8384-5p MIMAT0033428 Strongyloides ratti miR-8384-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 1 atggat 6
>ath-miR8172 MIMAT0032771 Arabidopsis thaliana miR8172
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 1 atggat 6
>stu-miR8035 MIMAT0030945 Solanum tuberosum miR8035
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 6 gatgga 1
>stu-miR7980b-3p MIMAT0030930 Solanum tuberosum miR7980b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 3 gatgga 8
>oan-miR-7408-3p MIMAT0028963 Ornithorhynchus anatinus
miR-7408-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>mdo-miR-7386j-5p MIMAT0028846 Monodelphis domestica
miR-7386j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>mdo-miR-7357-5p MIMAT0028726 Monodelphis domestica miR-7357-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 1 gatgga 6
>mdo-miR-7273-3p MIMAT0028521 Monodelphis domestica miR-7273-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggat 7
||||||
Sbjct: 8 atggat 3
>mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 6 gatgga 1
>mml-miR-7182-3p MIMAT0028311 Macaca mulatta miR-7182-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 1 atggat 6
>dev-miR-D21-3p MIMAT0028197 Duck enteritis miR-D21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggat 7
||||||
Sbjct: 6 atggat 1
>mmu-miR-7093-3p MIMAT0028093 Mus musculus miR-7093-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>mmu-miR-6906-5p MIMAT0027712 Mus musculus miR-6906-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 1 atggat 6
>bta-miR-1246 MIMAT0024567 Bos taurus miR-1246
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 2 atggat 7
>hhv6b-miR-Ro6-4-5p MIMAT0026462 Human herpesvirus miR-Ro6-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 3 gatgga 8
>aca-miR-490-5p MIMAT0021976 Anolis carolinensis miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>asu-miR-36f-5p MIMAT0021546 Ascaris suum miR-36f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>mtr-miR5256 MIMAT0021254 Medicago truncatula miR5256
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>bdi-miR5181a-5p MIMAT0020730 Brachypodium distachyon
miR5181a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggat 7
||||||
Sbjct: 8 atggat 3
>pma-miR-4548 MIMAT0019580 Petromyzon marinus miR-4548
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 6 gatgga 1
>ssc-miR-490-5p MIMAT0017959 Sus scrofa miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>ppy-miR-490-5p MIMAT0015909 Pongo pygmaeus miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>esi-miR3454d-3p MIMAT0017784 Ectocarpus siliculosus miR3454d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>esi-miR3454e-3p MIMAT0017770 Ectocarpus siliculosus miR3454e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>esi-miR3454c-3p MIMAT0017752 Ectocarpus siliculosus miR3454c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>esi-miR3454a-3p MIMAT0017748 Ectocarpus siliculosus miR3454a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>esi-miR3454g-3p MIMAT0017746 Ectocarpus siliculosus miR3454g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>aly-miR842-5p MIMAT0017627 Arabidopsis lyrata miR842-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 3 gatgga 8
>bmo-miR-3343 MIMAT0015530 Bombyx mori miR-3343
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>tgu-miR-490-5p MIMAT0026996 Taeniopygia guttata miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>eca-miR-490-5p MIMAT0012944 Equus caballus miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>rno-miR-490-5p MIMAT0017356 Rattus norvegicus miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>mdv2-miR-M32-5p MIMAT0012732 Mareks disease miR-M32-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>bta-miR-2392 MIMAT0011945 Bos taurus miR-2392
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 1 atggat 6
>crm-miR-2228 MIMAT0011625 Caenorhabditis remanei miR-2228
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggat 7
||||||
Sbjct: 8 atggat 3
>cel-miR-2211-5p MIMAT0011437 Caenorhabditis elegans miR-2211-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>sme-miR-2171 MIMAT0011271 Schmidtea mediterranea miR-2171
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 3 gatgga 8
>mtr-miR1510b-5p MIMAT0010028 Medicago truncatula miR1510b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>mmu-miR-1969 MIMAT0009442 Mus musculus miR-1969
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 3 gatgga 8
>ptr-miR-1246 MIMAT0007972 Pan troglodytes miR-1246
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 2 atggat 7
>osa-miR1852 MIMAT0007772 Oryza sativa miR1852
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>mml-miR-490-5p MIMAT0006350 Macaca mulatta miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>oan-miR-1422b-2-5p MIMAT0009175 Ornithorhynchus anatinus
miR-1422b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggat 7
||||||
Sbjct: 8 atggat 3
>oan-miR-1400-5p MIMAT0007205 Ornithorhynchus anatinus
miR-1400-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 1 gatgga 6
>oan-miR-1422c-5p MIMAT0006891 Ornithorhynchus anatinus
miR-1422c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggat 7
||||||
Sbjct: 8 atggat 3
>oan-miR-490-5p MIMAT0006810 Ornithorhynchus anatinus miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>hsa-miR-1261 MIMAT0005913 Homo sapiens miR-1261
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 1 atggat 6
>hsa-miR-1246 MIMAT0005898 Homo sapiens miR-1246
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 2 atggat 7
>cre-miR1170.1 MIMAT0005429 Chlamydomonas reinhardtii miR1170.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 8 gatgga 3
>mdv2-miR-M15-5p MIMAT0004453 Mareks disease miR-M15-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 1 gatgga 6
>mmu-miR-490-5p MIMAT0017261 Mus musculus miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>hsv1-miR-H1-5p MIMAT0003744 Herpes Simplex miR-H1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgga 6
||||||
Sbjct: 1 gatgga 6
>gga-miR-490-5p MIMAT0026633 Gallus gallus miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>hsa-miR-490-5p MIMAT0004764 Homo sapiens miR-490-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggat 7
||||||
Sbjct: 3 atggat 8
>rno-miR-141-5p MIMAT0017128 Rattus norvegicus miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgga 6
||||||
Sbjct: 6 gatgga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 104
Number of extensions: 95
Number of successful extensions: 69
Number of sequences better than 100.0: 69
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 69
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
