BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-6-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-7-3p MIMAT0035283 Gyrodactylus salaris miR-7-3p 14 20
efu-miR-181a MIMAT0035054 Eptesicus fuscus miR-181a 14 20
eca-miR-9044 MIMAT0034587 Equus caballus miR-9044 14 20
hsa-miR-8069 MIMAT0030996 Homo sapiens miR-8069 14 20
hsa-miR-758-5p MIMAT0022929 Homo sapiens miR-758-5p 14 20
kshv-miR-K12-6-3p MIMAT0002189 Kaposi sarcoma-associated miR-K12... 14 20
hsa-miR-181c-3p MIMAT0004559 Homo sapiens miR-181c-3p 14 20
cel-miR-77-5p MIMAT0020774 Caenorhabditis elegans miR-77-5p 14 20
oha-miR-218-2-3p MIMAT0036838 Ophiophagus hannah miR-218-2-3p 12 80
oha-miR-218-1-3p MIMAT0036837 Ophiophagus hannah miR-218-1-3p 12 80
oha-miR-181a-2-3p MIMAT0036759 Ophiophagus hannah miR-181a-2-3p 12 80
chi-miR-380-5p MIMAT0036197 Capra hircus miR-380-5p 12 80
chi-miR-181c-3p MIMAT0036004 Capra hircus miR-181c-3p 12 80
gra-miR8770 MIMAT0034208 Gossypium raimondii miR8770 12 80
ssa-miR-218-3p MIMAT0032525 Salmo salar miR-218-3p 12 80
ssa-miR-181a-5-3p MIMAT0032422 Salmo salar miR-181a-5-3p 12 80
ssa-miR-181a-4-3p MIMAT0032421 Salmo salar miR-181a-4-3p 12 80
ssa-miR-181a-2-3p MIMAT0032419 Salmo salar miR-181a-2-3p 12 80
ssa-miR-181a-1-3p MIMAT0032418 Salmo salar miR-181a-1-3p 12 80
ssa-miR-15c-2-3p MIMAT0032400 Salmo salar miR-15c-2-3p 12 80
prd-miR-7907b-3p MIMAT0030673 Panagrellus redivivus miR-7907b-3p 12 80
prd-miR-2-5p MIMAT0030558 Panagrellus redivivus miR-2-5p 12 80
mdo-miR-7392-3p MIMAT0028883 Monodelphis domestica miR-7392-3p 12 80
mdo-miR-15c-3p MIMAT0028769 Monodelphis domestica miR-15c-3p 12 80
mdo-miR-218-2-3p MIMAT0031111 Monodelphis domestica miR-218-2-3p 12 80
dre-miR-7146-5p MIMAT0028203 Danio rerio miR-7146-5p 12 80
bma-miR-5853 MIMAT0026351 Brugia malayi miR-5853 12 80
mmu-miR-6942-3p MIMAT0027785 Mus musculus miR-6942-3p 12 80
mmu-miR-6926-3p MIMAT0027753 Mus musculus miR-6926-3p 12 80
mmu-miR-6910-3p MIMAT0027721 Mus musculus miR-6910-3p 12 80
gga-miR-6576-5p MIMAT0025659 Gallus gallus miR-6576-5p 12 80
ppy-miR-1193 MIMAT0024369 Pongo pygmaeus miR-1193 12 80
ggo-miR-1193 MIMAT0024256 Gorilla gorilla miR-1193 12 80
ggo-miR-584 MIMAT0024127 Gorilla gorilla miR-584 12 80
cgr-miR-181c-3p MIMAT0023802 Cricetulus griseus miR-181c-3p 12 80
cgr-miR-181a-3p MIMAT0023798 Cricetulus griseus miR-181a-3p 12 80
sha-miR-181a-3p MIMAT0022840 Sarcophilus harrisii miR-181a-3p 12 80
ola-miR-181a-3p MIMAT0022587 Oryzias latipes miR-181a-3p 12 80
mtr-miR5554c-3p MIMAT0022226 Medicago truncatula miR5554c-3p 12 80
mtr-miR5554b-3p MIMAT0022208 Medicago truncatula miR5554b-3p 12 80
mtr-miR5554a-3p MIMAT0022200 Medicago truncatula miR5554a-3p 12 80
osa-miR5515 MIMAT0022149 Oryza sativa miR5515 12 80
rmi-miR-5327 MIMAT0021400 Rhipicephalus microplus miR-5327 12 80
pma-miR-218a-3p MIMAT0019530 Petromyzon marinus miR-218a-3p 12 80
pma-miR-181a-3p MIMAT0019487 Petromyzon marinus miR-181a-3p 12 80
oar-miR-1193-5p MIMAT0019269 Ovis aries miR-1193-5p 12 80
oar-miR-380-5p MIMAT0019253 Ovis aries miR-380-5p 12 80
tca-miR-3824-3p MIMAT0018675 Tribolium castaneum miR-3824-3p 12 80
ssc-miR-218-3p MIMAT0017969 Sus scrofa miR-218-3p 12 80
cin-miR-4110-5p MIMAT0016698 Ciona intestinalis miR-4110-5p 12 80
ppy-miR-584 MIMAT0016027 Pongo pygmaeus miR-584 12 80
ssc-miR-299 MIMAT0015712 Sus scrofa miR-299 12 80
aly-miR3445-5p.1 MIMAT0017724 Arabidopsis lyrata miR3445-5p.1 12 80
hsa-miR-1193 MIMAT0015049 Homo sapiens miR-1193 12 80
tgu-miR-181a-2-3p MIMAT0031043 Taeniopygia guttata miR-181a-2-3p 12 80
tgu-miR-181a-1-3p MIMAT0014641 Taeniopygia guttata miR-181a-1-3p 12 80
dps-miR-2542-3p MIMAT0012341 Drosophila pseudoobscura miR-2542-3p 12 80
sko-miR-34-3p MIMAT0019155 Saccoglossus kowalevskii miR-34-3p 12 80
ptr-miR-584 MIMAT0008257 Pan troglodytes miR-584 12 80
cel-miR-1820-3p MIMAT0020359 Caenorhabditis elegans miR-1820-3p 12 80
mml-miR-758-5p MIMAT0026909 Macaca mulatta miR-758-5p 12 80
mml-miR-584-5p MIMAT0006446 Macaca mulatta miR-584-5p 12 80
mml-miR-380-5p MIMAT0026866 Macaca mulatta miR-380-5p 12 80
mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p 12 80
gga-miR-1593 MIMAT0007456 Gallus gallus miR-1593 12 80
oan-miR-181a-1-3p MIMAT0006834 Ornithorhynchus anatinus miR-181a... 12 80
cre-miR1173 MIMAT0005431 Chlamydomonas reinhardtii miR1173 12 80
rno-miR-380-5p MIMAT0005308 Rattus norvegicus miR-380-5p 12 80
mdo-miR-218-1-3p MIMAT0026680 Monodelphis domestica miR-218-1-3p 12 80
xtr-miR-181a-2-3p MIMAT0005461 Xenopus tropicalis miR-181a-2-3p 12 80
xtr-miR-181a-1-3p MIMAT0003626 Xenopus tropicalis miR-181a-1-3p 12 80
ppt-miR1221-5p MIMAT0003916 Physcomitrella patens miR1221-5p 12 80
hsa-miR-584-5p MIMAT0003249 Homo sapiens miR-584-5p 12 80
dre-miR-181a-2-3p MIMAT0032007 Danio rerio miR-181a-2-3p 12 80
tni-miR-181a-3p MIMAT0003006 Tetraodon nigroviridis miR-181a-3p 12 80
fru-miR-181a-3p MIMAT0003005 Fugu rubripes miR-181a-3p 12 80
ppa-miR-181a-3p MIMAT0002636 Pan paniscus miR-181a-3p 12 80
mne-miR-181a-3p MIMAT0002634 Macaca nemestrina miR-181a-3p 12 80
lla-miR-181a-3p MIMAT0002632 Lagothrix lagotricha miR-181a-3p 12 80
ggo-miR-181a-3p MIMAT0002629 Gorilla gorilla miR-181a-3p 12 80
ppy-miR-181a-3p MIMAT0002627 Pongo pygmaeus miR-181a-3p 12 80
ptr-miR-181a-3p MIMAT0002624 Pan troglodytes miR-181a-3p 12 80
mml-miR-181a-3p MIMAT0002622 Macaca mulatta miR-181a-3p 12 80
mml-miR-218-2-3p MIMAT0026589 Macaca mulatta miR-218-2-3p 12 80
osa-miR396e-3p MIMAT0015159 Oryza sativa miR396e-3p 12 80
dre-miR-181a-3p MIMAT0001282 Danio rerio miR-181a-3p 12 80
gga-miR-181a-3p MIMAT0001150 Gallus gallus miR-181a-3p 12 80
rno-miR-181a-1-3p MIMAT0000884 Rattus norvegicus miR-181a-1-3p 12 80
rno-miR-181c-3p MIMAT0017137 Rattus norvegicus miR-181c-3p 12 80
mmu-miR-380-5p MIMAT0000744 Mus musculus miR-380-5p 12 80
mmu-miR-181c-3p MIMAT0017068 Mus musculus miR-181c-3p 12 80
mmu-miR-181a-1-3p MIMAT0000660 Mus musculus miR-181a-1-3p 12 80
hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p 12 80
hsa-miR-181a-3p MIMAT0000270 Homo sapiens miR-181a-3p 12 80
>gsa-miR-7-3p MIMAT0035283 Gyrodactylus salaris miR-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggtt 7
|||||||
Sbjct: 8 gatggtt 2
>efu-miR-181a MIMAT0035054 Eptesicus fuscus miR-181a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggtt 7
|||||||
Sbjct: 7 gatggtt 1
>eca-miR-9044 MIMAT0034587 Equus caballus miR-9044
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggtt 7
|||||||
Sbjct: 2 gatggtt 8
>hsa-miR-8069 MIMAT0030996 Homo sapiens miR-8069
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggtt 7
|||||||
Sbjct: 2 gatggtt 8
>hsa-miR-758-5p MIMAT0022929 Homo sapiens miR-758-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggtt 7
|||||||
Sbjct: 1 gatggtt 7
>kshv-miR-K12-6-3p MIMAT0002189 Kaposi sarcoma-associated
miR-K12-6-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggtt 7
|||||||
Sbjct: 2 gatggtt 8
>hsa-miR-181c-3p MIMAT0004559 Homo sapiens miR-181c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggtt 7
|||||||
Sbjct: 7 gatggtt 1
>cel-miR-77-5p MIMAT0020774 Caenorhabditis elegans miR-77-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggtt 7
|||||||
Sbjct: 1 gatggtt 7
>oha-miR-218-2-3p MIMAT0036838 Ophiophagus hannah miR-218-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>oha-miR-218-1-3p MIMAT0036837 Ophiophagus hannah miR-218-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>oha-miR-181a-2-3p MIMAT0036759 Ophiophagus hannah miR-181a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>chi-miR-380-5p MIMAT0036197 Capra hircus miR-380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>chi-miR-181c-3p MIMAT0036004 Capra hircus miR-181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>gra-miR8770 MIMAT0034208 Gossypium raimondii miR8770
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatggt 6
||||||
Sbjct: 3 gatggt 8
>ssa-miR-218-3p MIMAT0032525 Salmo salar miR-218-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 3 atggtt 8
>ssa-miR-181a-5-3p MIMAT0032422 Salmo salar miR-181a-5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>ssa-miR-181a-4-3p MIMAT0032421 Salmo salar miR-181a-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>ssa-miR-181a-2-3p MIMAT0032419 Salmo salar miR-181a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>ssa-miR-181a-1-3p MIMAT0032418 Salmo salar miR-181a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>ssa-miR-15c-2-3p MIMAT0032400 Salmo salar miR-15c-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggtt 7
||||||
Sbjct: 8 atggtt 3
>prd-miR-7907b-3p MIMAT0030673 Panagrellus redivivus
miR-7907b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggtt 7
||||||
Sbjct: 8 atggtt 3
>prd-miR-2-5p MIMAT0030558 Panagrellus redivivus miR-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggtt 7
||||||
Sbjct: 6 atggtt 1
>mdo-miR-7392-3p MIMAT0028883 Monodelphis domestica miR-7392-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggtt 7
||||||
Sbjct: 8 atggtt 3
>mdo-miR-15c-3p MIMAT0028769 Monodelphis domestica miR-15c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggtt 7
||||||
Sbjct: 8 atggtt 3
>mdo-miR-218-2-3p MIMAT0031111 Monodelphis domestica
miR-218-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>dre-miR-7146-5p MIMAT0028203 Danio rerio miR-7146-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggtt 7
||||||
Sbjct: 8 atggtt 3
>bma-miR-5853 MIMAT0026351 Brugia malayi miR-5853
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatggt 6
||||||
Sbjct: 1 gatggt 6
>mmu-miR-6942-3p MIMAT0027785 Mus musculus miR-6942-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 3 atggtt 8
>mmu-miR-6926-3p MIMAT0027753 Mus musculus miR-6926-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 8 gatggt 3
>mmu-miR-6910-3p MIMAT0027721 Mus musculus miR-6910-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 3 atggtt 8
>gga-miR-6576-5p MIMAT0025659 Gallus gallus miR-6576-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 3 atggtt 8
>ppy-miR-1193 MIMAT0024369 Pongo pygmaeus miR-1193
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatggt 6
||||||
Sbjct: 3 gatggt 8
>ggo-miR-1193 MIMAT0024256 Gorilla gorilla miR-1193
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatggt 6
||||||
Sbjct: 3 gatggt 8
>ggo-miR-584 MIMAT0024127 Gorilla gorilla miR-584
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 3 atggtt 8
>cgr-miR-181c-3p MIMAT0023802 Cricetulus griseus miR-181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>cgr-miR-181a-3p MIMAT0023798 Cricetulus griseus miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>sha-miR-181a-3p MIMAT0022840 Sarcophilus harrisii miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>ola-miR-181a-3p MIMAT0022587 Oryzias latipes miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>mtr-miR5554c-3p MIMAT0022226 Medicago truncatula miR5554c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>mtr-miR5554b-3p MIMAT0022208 Medicago truncatula miR5554b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>mtr-miR5554a-3p MIMAT0022200 Medicago truncatula miR5554a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>osa-miR5515 MIMAT0022149 Oryza sativa miR5515
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatggt 6
||||||
Sbjct: 3 gatggt 8
>rmi-miR-5327 MIMAT0021400 Rhipicephalus microplus miR-5327
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 3 atggtt 8
>pma-miR-218a-3p MIMAT0019530 Petromyzon marinus miR-218a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>pma-miR-181a-3p MIMAT0019487 Petromyzon marinus miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>oar-miR-1193-5p MIMAT0019269 Ovis aries miR-1193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatggt 6
||||||
Sbjct: 3 gatggt 8
>oar-miR-380-5p MIMAT0019253 Ovis aries miR-380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>tca-miR-3824-3p MIMAT0018675 Tribolium castaneum miR-3824-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>ssc-miR-218-3p MIMAT0017969 Sus scrofa miR-218-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>cin-miR-4110-5p MIMAT0016698 Ciona intestinalis miR-4110-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggtt 7
||||||
Sbjct: 6 atggtt 1
>ppy-miR-584 MIMAT0016027 Pongo pygmaeus miR-584
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 3 atggtt 8
>ssc-miR-299 MIMAT0015712 Sus scrofa miR-299
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>aly-miR3445-5p.1 MIMAT0017724 Arabidopsis lyrata miR3445-5p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggtt 7
||||||
Sbjct: 8 atggtt 3
>hsa-miR-1193 MIMAT0015049 Homo sapiens miR-1193
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatggt 6
||||||
Sbjct: 3 gatggt 8
>tgu-miR-181a-2-3p MIMAT0031043 Taeniopygia guttata
miR-181a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>tgu-miR-181a-1-3p MIMAT0014641 Taeniopygia guttata
miR-181a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>dps-miR-2542-3p MIMAT0012341 Drosophila pseudoobscura
miR-2542-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatggt 6
||||||
Sbjct: 3 gatggt 8
>sko-miR-34-3p MIMAT0019155 Saccoglossus kowalevskii miR-34-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>ptr-miR-584 MIMAT0008257 Pan troglodytes miR-584
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 3 atggtt 8
>cel-miR-1820-3p MIMAT0020359 Caenorhabditis elegans miR-1820-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atggtt 7
||||||
Sbjct: 6 atggtt 1
>mml-miR-758-5p MIMAT0026909 Macaca mulatta miR-758-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>mml-miR-584-5p MIMAT0006446 Macaca mulatta miR-584-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 3 atggtt 8
>mml-miR-380-5p MIMAT0026866 Macaca mulatta miR-380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>gga-miR-1593 MIMAT0007456 Gallus gallus miR-1593
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>oan-miR-181a-1-3p MIMAT0006834 Ornithorhynchus anatinus
miR-181a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>cre-miR1173 MIMAT0005431 Chlamydomonas reinhardtii miR1173
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>rno-miR-380-5p MIMAT0005308 Rattus norvegicus miR-380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>mdo-miR-218-1-3p MIMAT0026680 Monodelphis domestica
miR-218-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>xtr-miR-181a-2-3p MIMAT0005461 Xenopus tropicalis miR-181a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>xtr-miR-181a-1-3p MIMAT0003626 Xenopus tropicalis miR-181a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>ppt-miR1221-5p MIMAT0003916 Physcomitrella patens miR1221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatggt 6
||||||
Sbjct: 3 gatggt 8
>hsa-miR-584-5p MIMAT0003249 Homo sapiens miR-584-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 3 atggtt 8
>dre-miR-181a-2-3p MIMAT0032007 Danio rerio miR-181a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>tni-miR-181a-3p MIMAT0003006 Tetraodon nigroviridis miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>fru-miR-181a-3p MIMAT0003005 Fugu rubripes miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>ppa-miR-181a-3p MIMAT0002636 Pan paniscus miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>mne-miR-181a-3p MIMAT0002634 Macaca nemestrina miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>lla-miR-181a-3p MIMAT0002632 Lagothrix lagotricha miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>ggo-miR-181a-3p MIMAT0002629 Gorilla gorilla miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>ppy-miR-181a-3p MIMAT0002627 Pongo pygmaeus miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>ptr-miR-181a-3p MIMAT0002624 Pan troglodytes miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>mml-miR-181a-3p MIMAT0002622 Macaca mulatta miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>mml-miR-218-2-3p MIMAT0026589 Macaca mulatta miR-218-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>osa-miR396e-3p MIMAT0015159 Oryza sativa miR396e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>dre-miR-181a-3p MIMAT0001282 Danio rerio miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>gga-miR-181a-3p MIMAT0001150 Gallus gallus miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>rno-miR-181a-1-3p MIMAT0000884 Rattus norvegicus miR-181a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>rno-miR-181c-3p MIMAT0017137 Rattus norvegicus miR-181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>mmu-miR-380-5p MIMAT0000744 Mus musculus miR-380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>mmu-miR-181c-3p MIMAT0017068 Mus musculus miR-181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>mmu-miR-181a-1-3p MIMAT0000660 Mus musculus miR-181a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
>hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atggtt 7
||||||
Sbjct: 1 atggtt 6
>hsa-miR-181a-3p MIMAT0000270 Homo sapiens miR-181a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatggt 6
||||||
Sbjct: 6 gatggt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 115
Number of extensions: 107
Number of successful extensions: 94
Number of sequences better than 100.0: 94
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 94
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
