BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-6-3p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

cte-miR-1995 MIMAT0009706 Capitella teleta miR-1995                    14      20
rrv-miR-rR1-6-3p MIMAT0004414 Rhesus monkey miR-rR1-6-3p               14      20
oha-miR-1c-5p MIMAT0036801 Ophiophagus hannah miR-1c-5p                12      80
chi-miR-493-5p MIMAT0036253 Capra hircus miR-493-5p                    12      80
gsa-miR-184c-3p MIMAT0035325 Gyrodactylus salaris miR-184c-3p          12      80
efu-miR-493 MIMAT0034929 Eptesicus fuscus miR-493                      12      80
gra-miR8695 MIMAT0034076 Gossypium raimondii miR8695                   12      80
atr-miR8579 MIMAT0033863 Amborella trichopoda miR8579                  12      80
stu-miR8041b-3p MIMAT0030955 Solanum tuberosum miR8041b-3p             12      80
stu-miR8041a-3p MIMAT0030954 Solanum tuberosum miR8041a-3p             12      80
stu-miR7979 MIMAT0030846 Solanum tuberosum miR7979                     12      80
bdi-miR7784b-5p MIMAT0030324 Brachypodium distachyon miR7784b-5p       12      80
bdi-miR7784a-5p MIMAT0030322 Brachypodium distachyon miR7784a-5p       12      80
sbi-miR6232a-3p MIMAT0026445 Sorghum bicolor miR6232a-3p               12      80
ssc-miR-493-5p MIMAT0025377 Sus scrofa miR-493-5p                      12      80
hme-miR-3338 MIMAT0024982 Heliconius melpomene miR-3338                12      80
ppe-miR6297b MIMAT0027336 Prunus persica miR6297b                      12      80
mse-miR-3338 MIMAT0024432 Manduca sexta miR-3338                       12      80
ggo-miR-493 MIMAT0024249 Gorilla gorilla miR-493                       12      80
ola-miR-33 MIMAT0022576 Oryzias latipes miR-33                         12      80
bra-miR1885b MIMAT0023015 Brassica rapa miR1885b                       12      80
cin-miR-5612-3p MIMAT0022352 Ciona intestinalis miR-5612-3p            12      80
oar-miR-493-5p MIMAT0019237 Ovis aries miR-493-5p                      12      80
tca-miR-3851a-3p MIMAT0018759 Tribolium castaneum miR-3851a-3p         12      80
cin-miR-4031-3p MIMAT0016552 Ciona intestinalis miR-4031-3p            12      80
esi-miR3450-5p MIMAT0017757 Ectocarpus siliculosus miR3450-5p          12      80
bmo-miR-3347b MIMAT0015608 Bombyx mori miR-3347b                       12      80
bmo-miR-3347a MIMAT0015533 Bombyx mori miR-3347a                       12      80
bmo-miR-3338-3p MIMAT0015526 Bombyx mori miR-3338-3p                   12      80
bta-miR-1434-5p MIMAT0012039 Bos taurus miR-1434-5p                    12      80
mml-miR-493-5p MIMAT0026884 Macaca mulatta miR-493-5p                  12      80
gga-miR-1397-3p MIMAT0007284 Gallus gallus miR-1397-3p                 12      80
mmu-miR-493-5p MIMAT0017276 Mus musculus miR-493-5p                    12      80
rno-miR-493-5p MIMAT0017217 Rattus norvegicus miR-493-5p               12      80
hsa-miR-493-5p MIMAT0002813 Homo sapiens miR-493-5p                    12      80
>cte-miR-1995 MIMAT0009706 Capitella teleta miR-1995
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gatgtac 7
         |||||||
Sbjct: 7 gatgtac 1
>rrv-miR-rR1-6-3p MIMAT0004414 Rhesus monkey miR-rR1-6-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gatgtac 7
         |||||||
Sbjct: 2 gatgtac 8
>oha-miR-1c-5p MIMAT0036801 Ophiophagus hannah miR-1c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 6 atgtac 1
>chi-miR-493-5p MIMAT0036253 Capra hircus miR-493-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 8 atgtac 3
>gsa-miR-184c-3p MIMAT0035325 Gyrodactylus salaris miR-184c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 1 gatgta 6
>efu-miR-493 MIMAT0034929 Eptesicus fuscus miR-493
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 8 atgtac 3
>gra-miR8695 MIMAT0034076 Gossypium raimondii miR8695
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 3 gatgta 8
>atr-miR8579 MIMAT0033863 Amborella trichopoda miR8579
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 3 gatgta 8
>stu-miR8041b-3p MIMAT0030955 Solanum tuberosum miR8041b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 3 gatgta 8
>stu-miR8041a-3p MIMAT0030954 Solanum tuberosum miR8041a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 3 gatgta 8
>stu-miR7979 MIMAT0030846 Solanum tuberosum miR7979
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 8 atgtac 3
>bdi-miR7784b-5p MIMAT0030324 Brachypodium distachyon
         miR7784b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 6 atgtac 1
>bdi-miR7784a-5p MIMAT0030322 Brachypodium distachyon
         miR7784a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 6 atgtac 1
>sbi-miR6232a-3p MIMAT0026445 Sorghum bicolor miR6232a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 3 gatgta 8
>ssc-miR-493-5p MIMAT0025377 Sus scrofa miR-493-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 8 atgtac 3
>hme-miR-3338 MIMAT0024982 Heliconius melpomene miR-3338
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 1 atgtac 6
>ppe-miR6297b MIMAT0027336 Prunus persica miR6297b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 1 gatgta 6
>mse-miR-3338 MIMAT0024432 Manduca sexta miR-3338
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 1 atgtac 6
>ggo-miR-493 MIMAT0024249 Gorilla gorilla miR-493
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 8 atgtac 3
>ola-miR-33 MIMAT0022576 Oryzias latipes miR-33
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 3 atgtac 8
>bra-miR1885b MIMAT0023015 Brassica rapa miR1885b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 6 gatgta 1
>cin-miR-5612-3p MIMAT0022352 Ciona intestinalis miR-5612-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 8 gatgta 3
>oar-miR-493-5p MIMAT0019237 Ovis aries miR-493-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 8 atgtac 3
>tca-miR-3851a-3p MIMAT0018759 Tribolium castaneum miR-3851a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 8 atgtac 3
>cin-miR-4031-3p MIMAT0016552 Ciona intestinalis miR-4031-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 3 atgtac 8
>esi-miR3450-5p MIMAT0017757 Ectocarpus siliculosus miR3450-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 6 gatgta 1
>bmo-miR-3347b MIMAT0015608 Bombyx mori miR-3347b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 6 gatgta 1
>bmo-miR-3347a MIMAT0015533 Bombyx mori miR-3347a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 6 gatgta 1
>bmo-miR-3338-3p MIMAT0015526 Bombyx mori miR-3338-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 1 atgtac 6
>bta-miR-1434-5p MIMAT0012039 Bos taurus miR-1434-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 6 atgtac 1
>mml-miR-493-5p MIMAT0026884 Macaca mulatta miR-493-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 8 atgtac 3
>gga-miR-1397-3p MIMAT0007284 Gallus gallus miR-1397-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gatgta 6
         ||||||
Sbjct: 1 gatgta 6
>mmu-miR-493-5p MIMAT0017276 Mus musculus miR-493-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 8 atgtac 3
>rno-miR-493-5p MIMAT0017217 Rattus norvegicus miR-493-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 8 atgtac 3
>hsa-miR-493-5p MIMAT0002813 Homo sapiens miR-493-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atgtac 7
         ||||||
Sbjct: 8 atgtac 3
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 51
Number of extensions: 49
Number of successful extensions: 35
Number of sequences better than 100.0: 35
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 35
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)