BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-8-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dre-miR-723-3p MIMAT0003751 Danio rerio miR-723-3p 16 6.9
ssa-miR-723-3p MIMAT0032670 Salmo salar miR-723-3p 14 27
stu-miR8036-3p MIMAT0030946 Solanum tuberosum miR8036-3p 14 27
bdi-miR7753-5p MIMAT0030246 Brachypodium distachyon miR7753-5p 14 27
lja-miR7536b MIMAT0029362 Lotus japonicus miR7536b 14 27
lja-miR7536a MIMAT0029361 Lotus japonicus miR7536a 14 27
ghr-miR7485 MIMAT0029126 Gossypium hirsutum miR7485 14 27
gga-miR-6601-3p MIMAT0025695 Gallus gallus miR-6601-3p 14 27
ppy-miR-3617 MIMAT0024372 Pongo pygmaeus miR-3617 14 27
ggo-miR-641 MIMAT0024262 Gorilla gorilla miR-641 14 27
hsa-miR-3913-3p MIMAT0019225 Homo sapiens miR-3913-3p 14 27
hsa-miR-3617-5p MIMAT0017997 Homo sapiens miR-3617-5p 14 27
api-miR-3056 MIMAT0014799 Acyrthosiphon pisum miR-3056 14 27
mtr-miR2660 MIMAT0013466 Medicago truncatula miR2660 14 27
sme-miR-87d-5p MIMAT0012136 Schmidtea mediterranea miR-87d-5p 14 27
ptr-miR-641 MIMAT0008295 Pan troglodytes miR-641 14 27
hsa-miR-641 MIMAT0003311 Homo sapiens miR-641 14 27
>dre-miR-723-3p MIMAT0003751 Danio rerio miR-723-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gatgtctt 8
||||||||
Sbjct: 8 gatgtctt 1
>ssa-miR-723-3p MIMAT0032670 Salmo salar miR-723-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatgtct 7
|||||||
Sbjct: 7 gatgtct 1
>stu-miR8036-3p MIMAT0030946 Solanum tuberosum miR8036-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atgtctt 8
|||||||
Sbjct: 2 atgtctt 8
>bdi-miR7753-5p MIMAT0030246 Brachypodium distachyon miR7753-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atgtctt 8
|||||||
Sbjct: 1 atgtctt 7
>lja-miR7536b MIMAT0029362 Lotus japonicus miR7536b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtctt 8
|||||||
Sbjct: 8 atgtctt 2
>lja-miR7536a MIMAT0029361 Lotus japonicus miR7536a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtctt 8
|||||||
Sbjct: 8 atgtctt 2
>ghr-miR7485 MIMAT0029126 Gossypium hirsutum miR7485
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtctt 8
|||||||
Sbjct: 8 atgtctt 2
>gga-miR-6601-3p MIMAT0025695 Gallus gallus miR-6601-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatgtct 7
|||||||
Sbjct: 1 gatgtct 7
>ppy-miR-3617 MIMAT0024372 Pongo pygmaeus miR-3617
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtctt 8
|||||||
Sbjct: 8 atgtctt 2
>ggo-miR-641 MIMAT0024262 Gorilla gorilla miR-641
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtctt 8
|||||||
Sbjct: 8 atgtctt 2
>hsa-miR-3913-3p MIMAT0019225 Homo sapiens miR-3913-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatgtct 7
|||||||
Sbjct: 7 gatgtct 1
>hsa-miR-3617-5p MIMAT0017997 Homo sapiens miR-3617-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtctt 8
|||||||
Sbjct: 8 atgtctt 2
>api-miR-3056 MIMAT0014799 Acyrthosiphon pisum miR-3056
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtctt 8
|||||||
Sbjct: 8 atgtctt 2
>mtr-miR2660 MIMAT0013466 Medicago truncatula miR2660
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtctt 8
|||||||
Sbjct: 8 atgtctt 2
>sme-miR-87d-5p MIMAT0012136 Schmidtea mediterranea miR-87d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atgtctt 8
|||||||
Sbjct: 2 atgtctt 8
>ptr-miR-641 MIMAT0008295 Pan troglodytes miR-641
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtctt 8
|||||||
Sbjct: 8 atgtctt 2
>hsa-miR-641 MIMAT0003311 Homo sapiens miR-641
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atgtctt 8
|||||||
Sbjct: 8 atgtctt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 147
Number of extensions: 129
Number of successful extensions: 94
Number of sequences better than 100.0: 17
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
