BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d17-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D17-5p MIMAT0028190 Duck enteritis miR-D17-5p 14 20
mml-miR-891b-5p MIMAT0024335 Macaca mulatta miR-891b-5p 14 20
osa-miR5812 MIMAT0023284 Oryza sativa miR5812 14 20
ppy-miR-891a MIMAT0016126 Pongo pygmaeus miR-891a 14 20
dps-miR-2569-5p MIMAT0012406 Drosophila pseudoobscura miR-2569-5p 14 20
ptr-miR-891a MIMAT0008333 Pan troglodytes miR-891a 14 20
hsa-miR-891a-5p MIMAT0004902 Homo sapiens miR-891a-5p 14 20
dvi-miR-981-3p MIMAT0035598 Drosophila virilis miR-981-3p 12 80
gsa-miR-76a-3p MIMAT0035287 Gyrodactylus salaris miR-76a-3p 12 80
efu-miR-9353 MIMAT0035140 Eptesicus fuscus miR-9353 12 80
str-miR-76-3p MIMAT0033415 Strongyloides ratti miR-76-3p 12 80
ppc-miR-76-3p MIMAT0033088 Pristionchus pacificus miR-76-3p 12 80
ppe-miR8132 MIMAT0031562 Prunus persica miR8132 12 80
prd-miR-76-3p MIMAT0030819 Panagrellus redivivus miR-76-3p 12 80
prd-miR-7942-3p MIMAT0030745 Panagrellus redivivus miR-7942-3p 12 80
prd-miR-7893-3p MIMAT0030571 Panagrellus redivivus miR-7893-3p 12 80
lva-miR-981-3p MIMAT0032221 Lytechinus variegatus miR-981-3p 12 80
pmi-miR-981-3p MIMAT0032174 Patiria miniata miR-981-3p 12 80
cbn-miR-76 MIMAT0029777 Caenorhabditis brenneri miR-76 12 80
cme-miR858 MIMAT0026083 Cucumis melo miR858 12 80
mdm-miR858 MIMAT0026070 Malus domestica miR858 12 80
hme-miR-981 MIMAT0024999 Heliconius melpomene miR-981 12 80
osa-miR6252 MIMAT0024875 Oryza sativa miR6252 12 80
mse-miR-981 MIMAT0024433 Manduca sexta miR-981 12 80
ame-miR-6061 MIMAT0023685 Apis mellifera miR-6061 12 80
hco-miR-76 MIMAT0023496 Haemonchus contortus miR-76 12 80
ath-miR858b MIMAT0022417 Arabidopsis thaliana miR858b 12 80
asu-miR-5346-3p MIMAT0021541 Ascaris suum miR-5346-3p 12 80
asu-miR-76-3p MIMAT0021471 Ascaris suum miR-76-3p 12 80
spu-miR-981 MIMAT0020068 Strongylocentrotus purpuratus miR-981 12 80
gma-miR4414-3p MIMAT0032112 Glycine max miR4414-3p 12 80
gma-miR4397-5p MIMAT0020953 Glycine max miR4397-5p 12 80
ame-miR-3721 MIMAT0018546 Apis mellifera miR-3721 12 80
cin-miR-4076-5p MIMAT0016640 Ciona intestinalis miR-4076-5p 12 80
aly-miR163-3p.2 MIMAT0017679 Arabidopsis lyrata miR163-3p.2 12 80
aly-miR858-5p MIMAT0017645 Arabidopsis lyrata miR858-5p 12 80
api-miR-981 MIMAT0014736 Acyrthosiphon pisum miR-981 12 80
cqu-miR-981 MIMAT0014386 Culex quinquefasciatus miR-981 12 80
aae-miR-981 MIMAT0014267 Aedes aegypti miR-981 12 80
dpu-miR-981 MIMAT0012675 Daphnia pulex miR-981 12 80
dsi-miR-981-3p MIMAT0012486 Drosophila simulans miR-981-3p 12 80
dps-miR-2569-3p MIMAT0012407 Drosophila pseudoobscura miR-2569-3p 12 80
dps-miR-981-3p MIMAT0012220 Drosophila pseudoobscura miR-981-3p 12 80
crm-miR-76 MIMAT0011525 Caenorhabditis remanei miR-76 12 80
cbr-miR-76 MIMAT0011466 Caenorhabditis briggsae miR-76 12 80
sme-miR-76-3p MIMAT0011397 Schmidtea mediterranea miR-76-3p 12 80
ame-miR-981 MIMAT0010121 Apis mellifera miR-981 12 80
tca-miR-981 MIMAT0010098 Tribolium castaneum miR-981 12 80
osa-miR1846e MIMAT0010042 Oryza sativa miR1846e 12 80
lgi-miR-981 MIMAT0009601 Lottia gigantea miR-981 12 80
cte-miR-981 MIMAT0009548 Capitella teleta miR-981 12 80
aga-miR-981 MIMAT0007857 Anopheles gambiae miR-981 12 80
gga-miR-1772-3p MIMAT0007682 Gallus gallus miR-1772-3p 12 80
gga-miR-1720-3p MIMAT0007618 Gallus gallus miR-1720-3p 12 80
odi-miR-1479 MIMAT0006031 Oikopleura dioica miR-1479 12 80
oan-miR-1421g-1-3p MIMAT0006976 Ornithorhynchus anatinus miR-142... 12 80
dme-miR-981-3p MIMAT0005497 Drosophila melanogaster miR-981-3p 12 80
ath-miR858a MIMAT0004302 Arabidopsis thaliana miR858a 12 80
sme-miR-7b-3p MIMAT0012097 Schmidtea mediterranea miR-7b-3p 12 80
dre-miR-196a-3p MIMAT0031983 Danio rerio miR-196a-3p 12 80
hcmv-miR-UL36-5p MIMAT0001576 Human cytomegalovirus miR-UL36-5p 12 80
mmu-miR-196a-1-3p MIMAT0017013 Mus musculus miR-196a-1-3p 12 80
cel-miR-76-3p MIMAT0000048 Caenorhabditis elegans miR-76-3p 12 80
cel-miR-64-3p MIMAT0015105 Caenorhabditis elegans miR-64-3p 12 80
>dev-miR-D17-5p MIMAT0028190 Duck enteritis miR-D17-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcaacga 7
|||||||
Sbjct: 2 gcaacga 8
>mml-miR-891b-5p MIMAT0024335 Macaca mulatta miR-891b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcaacga 7
|||||||
Sbjct: 2 gcaacga 8
>osa-miR5812 MIMAT0023284 Oryza sativa miR5812
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcaacga 7
|||||||
Sbjct: 2 gcaacga 8
>ppy-miR-891a MIMAT0016126 Pongo pygmaeus miR-891a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcaacga 7
|||||||
Sbjct: 2 gcaacga 8
>dps-miR-2569-5p MIMAT0012406 Drosophila pseudoobscura
miR-2569-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcaacga 7
|||||||
Sbjct: 8 gcaacga 2
>ptr-miR-891a MIMAT0008333 Pan troglodytes miR-891a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcaacga 7
|||||||
Sbjct: 2 gcaacga 8
>hsa-miR-891a-5p MIMAT0004902 Homo sapiens miR-891a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcaacga 7
|||||||
Sbjct: 2 gcaacga 8
>dvi-miR-981-3p MIMAT0035598 Drosophila virilis miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>gsa-miR-76a-3p MIMAT0035287 Gyrodactylus salaris miR-76a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>efu-miR-9353 MIMAT0035140 Eptesicus fuscus miR-9353
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 6 caacga 1
>str-miR-76-3p MIMAT0033415 Strongyloides ratti miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>ppc-miR-76-3p MIMAT0033088 Pristionchus pacificus miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>ppe-miR8132 MIMAT0031562 Prunus persica miR8132
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacga 7
||||||
Sbjct: 3 caacga 8
>prd-miR-76-3p MIMAT0030819 Panagrellus redivivus miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>prd-miR-7942-3p MIMAT0030745 Panagrellus redivivus miR-7942-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 8 caacga 3
>prd-miR-7893-3p MIMAT0030571 Panagrellus redivivus miR-7893-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacga 7
||||||
Sbjct: 1 caacga 6
>lva-miR-981-3p MIMAT0032221 Lytechinus variegatus miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>pmi-miR-981-3p MIMAT0032174 Patiria miniata miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>cbn-miR-76 MIMAT0029777 Caenorhabditis brenneri miR-76
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>cme-miR858 MIMAT0026083 Cucumis melo miR858
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 8 caacga 3
>mdm-miR858 MIMAT0026070 Malus domestica miR858
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>hme-miR-981 MIMAT0024999 Heliconius melpomene miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>osa-miR6252 MIMAT0024875 Oryza sativa miR6252
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 8 caacga 3
>mse-miR-981 MIMAT0024433 Manduca sexta miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>ame-miR-6061 MIMAT0023685 Apis mellifera miR-6061
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcaacg 6
||||||
Sbjct: 8 gcaacg 3
>hco-miR-76 MIMAT0023496 Haemonchus contortus miR-76
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>ath-miR858b MIMAT0022417 Arabidopsis thaliana miR858b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>asu-miR-5346-3p MIMAT0021541 Ascaris suum miR-5346-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 6 caacga 1
>asu-miR-76-3p MIMAT0021471 Ascaris suum miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>spu-miR-981 MIMAT0020068 Strongylocentrotus purpuratus miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>gma-miR4414-3p MIMAT0032112 Glycine max miR4414-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacga 7
||||||
Sbjct: 3 caacga 8
>gma-miR4397-5p MIMAT0020953 Glycine max miR4397-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 8 caacga 3
>ame-miR-3721 MIMAT0018546 Apis mellifera miR-3721
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 6 caacga 1
>cin-miR-4076-5p MIMAT0016640 Ciona intestinalis miR-4076-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacga 7
||||||
Sbjct: 1 caacga 6
>aly-miR163-3p.2 MIMAT0017679 Arabidopsis lyrata miR163-3p.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 8 caacga 3
>aly-miR858-5p MIMAT0017645 Arabidopsis lyrata miR858-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 8 caacga 3
>api-miR-981 MIMAT0014736 Acyrthosiphon pisum miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>cqu-miR-981 MIMAT0014386 Culex quinquefasciatus miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>aae-miR-981 MIMAT0014267 Aedes aegypti miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>dpu-miR-981 MIMAT0012675 Daphnia pulex miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>dsi-miR-981-3p MIMAT0012486 Drosophila simulans miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>dps-miR-2569-3p MIMAT0012407 Drosophila pseudoobscura
miR-2569-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacga 7
||||||
Sbjct: 1 caacga 6
>dps-miR-981-3p MIMAT0012220 Drosophila pseudoobscura miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>crm-miR-76 MIMAT0011525 Caenorhabditis remanei miR-76
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>cbr-miR-76 MIMAT0011466 Caenorhabditis briggsae miR-76
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>sme-miR-76-3p MIMAT0011397 Schmidtea mediterranea miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>ame-miR-981 MIMAT0010121 Apis mellifera miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>tca-miR-981 MIMAT0010098 Tribolium castaneum miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>osa-miR1846e MIMAT0010042 Oryza sativa miR1846e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacga 7
||||||
Sbjct: 1 caacga 6
>lgi-miR-981 MIMAT0009601 Lottia gigantea miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>cte-miR-981 MIMAT0009548 Capitella teleta miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>aga-miR-981 MIMAT0007857 Anopheles gambiae miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>gga-miR-1772-3p MIMAT0007682 Gallus gallus miR-1772-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 6 caacga 1
>gga-miR-1720-3p MIMAT0007618 Gallus gallus miR-1720-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcaacg 6
||||||
Sbjct: 3 gcaacg 8
>odi-miR-1479 MIMAT0006031 Oikopleura dioica miR-1479
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacga 7
||||||
Sbjct: 1 caacga 6
>oan-miR-1421g-1-3p MIMAT0006976 Ornithorhynchus anatinus
miR-1421g-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcaacg 6
||||||
Sbjct: 8 gcaacg 3
>dme-miR-981-3p MIMAT0005497 Drosophila melanogaster miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>ath-miR858a MIMAT0004302 Arabidopsis thaliana miR858a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 8 caacga 3
>sme-miR-7b-3p MIMAT0012097 Schmidtea mediterranea miR-7b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacga 7
||||||
Sbjct: 1 caacga 6
>dre-miR-196a-3p MIMAT0031983 Danio rerio miR-196a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcaacg 6
||||||
Sbjct: 3 gcaacg 8
>hcmv-miR-UL36-5p MIMAT0001576 Human cytomegalovirus miR-UL36-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 6 caacga 1
>mmu-miR-196a-1-3p MIMAT0017013 Mus musculus miR-196a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 caacga 7
||||||
Sbjct: 1 caacga 6
>cel-miR-76-3p MIMAT0000048 Caenorhabditis elegans miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 caacga 7
||||||
Sbjct: 7 caacga 2
>cel-miR-64-3p MIMAT0015105 Caenorhabditis elegans miR-64-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcaacg 6
||||||
Sbjct: 3 gcaacg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 78
Number of extensions: 71
Number of successful extensions: 64
Number of sequences better than 100.0: 64
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 64
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
