BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-7-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rrv-miR-rR1-7-3p MIMAT0004416 Rhesus monkey miR-rR1-7-3p 14 20
ssa-miR-2184-3p MIMAT0032745 Salmo salar miR-2184-3p 12 80
prd-miR-1-5p MIMAT0030720 Panagrellus redivivus miR-1-5p 12 80
prd-miR-7966a-5p MIMAT0030596 Panagrellus redivivus miR-7966a-5p 12 80
prd-miR-7871-3p MIMAT0030487 Panagrellus redivivus miR-7871-3p 12 80
lco-miR-7642-3p MIMAT0029785 Leucosolenia complicata miR-7642-3p 12 80
sci-miR-7642-3p MIMAT0029784 Sycon ciliatum miR-7642-3p 12 80
hsa-miR-6863 MIMAT0027627 Homo sapiens miR-6863 12 80
hsa-miR-6767-3p MIMAT0027435 Homo sapiens miR-6767-3p 12 80
pma-miR-4604 MIMAT0019638 Petromyzon marinus miR-4604 12 80
gma-miR4371c MIMAT0018268 Glycine max miR4371c 12 80
cin-miR-4189-5p MIMAT0016807 Ciona intestinalis miR-4189-5p 12 80
cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p 12 80
tgu-miR-2989 MIMAT0014525 Taeniopygia guttata miR-2989 12 80
hvt-miR-H17-5p MIMAT0012872 Herpesvirus of miR-H17-5p 12 80
bta-miR-2450c MIMAT0012028 Bos taurus miR-2450c 12 80
mdv2-miR-M30-3p MIMAT0012546 Mareks disease miR-M30-3p 12 80
hcmv-miR-US4-5p MIMAT0003341 Human cytomegalovirus miR-US4-5p 12 80
ptc-miR478c MIMAT0002078 Populus trichocarpa miR478c 12 80
ptc-miR478b MIMAT0002077 Populus trichocarpa miR478b 12 80
ptc-miR478a MIMAT0002076 Populus trichocarpa miR478a 12 80
>rrv-miR-rR1-7-3p MIMAT0004416 Rhesus monkey miR-rR1-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcacgtc 7
|||||||
Sbjct: 2 gcacgtc 8
>ssa-miR-2184-3p MIMAT0032745 Salmo salar miR-2184-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcacgt 6
||||||
Sbjct: 1 gcacgt 6
>prd-miR-1-5p MIMAT0030720 Panagrellus redivivus miR-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacgt 6
||||||
Sbjct: 6 gcacgt 1
>prd-miR-7966a-5p MIMAT0030596 Panagrellus redivivus
miR-7966a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cacgtc 7
||||||
Sbjct: 1 cacgtc 6
>prd-miR-7871-3p MIMAT0030487 Panagrellus redivivus miR-7871-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcacgt 6
||||||
Sbjct: 1 gcacgt 6
>lco-miR-7642-3p MIMAT0029785 Leucosolenia complicata
miR-7642-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cacgtc 7
||||||
Sbjct: 8 cacgtc 3
>sci-miR-7642-3p MIMAT0029784 Sycon ciliatum miR-7642-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cacgtc 7
||||||
Sbjct: 8 cacgtc 3
>hsa-miR-6863 MIMAT0027627 Homo sapiens miR-6863
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cacgtc 7
||||||
Sbjct: 8 cacgtc 3
>hsa-miR-6767-3p MIMAT0027435 Homo sapiens miR-6767-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacgt 6
||||||
Sbjct: 8 gcacgt 3
>pma-miR-4604 MIMAT0019638 Petromyzon marinus miR-4604
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacgt 6
||||||
Sbjct: 6 gcacgt 1
>gma-miR4371c MIMAT0018268 Glycine max miR4371c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cacgtc 7
||||||
Sbjct: 6 cacgtc 1
>cin-miR-4189-5p MIMAT0016807 Ciona intestinalis miR-4189-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacgt 6
||||||
Sbjct: 6 gcacgt 1
>cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcacgt 6
||||||
Sbjct: 3 gcacgt 8
>tgu-miR-2989 MIMAT0014525 Taeniopygia guttata miR-2989
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcacgt 6
||||||
Sbjct: 1 gcacgt 6
>hvt-miR-H17-5p MIMAT0012872 Herpesvirus of miR-H17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cacgtc 7
||||||
Sbjct: 3 cacgtc 8
>bta-miR-2450c MIMAT0012028 Bos taurus miR-2450c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cacgtc 7
||||||
Sbjct: 1 cacgtc 6
>mdv2-miR-M30-3p MIMAT0012546 Mareks disease miR-M30-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cacgtc 7
||||||
Sbjct: 8 cacgtc 3
>hcmv-miR-US4-5p MIMAT0003341 Human cytomegalovirus miR-US4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cacgtc 7
||||||
Sbjct: 8 cacgtc 3
>ptc-miR478c MIMAT0002078 Populus trichocarpa miR478c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cacgtc 7
||||||
Sbjct: 7 cacgtc 2
>ptc-miR478b MIMAT0002077 Populus trichocarpa miR478b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cacgtc 7
||||||
Sbjct: 7 cacgtc 2
>ptc-miR478a MIMAT0002076 Populus trichocarpa miR478a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cacgtc 7
||||||
Sbjct: 7 cacgtc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 31
Number of extensions: 30
Number of successful extensions: 21
Number of sequences better than 100.0: 21
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 21
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
