BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m25-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv2-miR-M25-3p MIMAT0004470 Mareks disease miR-M25-3p 14 20
oha-miR-142-3p MIMAT0036722 Ophiophagus hannah miR-142-3p 12 80
tch-miR-142 MIMAT0036470 Tupaia chinensis miR-142 12 80
chi-miR-454-3p MIMAT0036240 Capra hircus miR-454-3p 12 80
bdi-miR9484 MIMAT0035491 Brachypodium distachyon miR9484 12 80
efu-miR-142 MIMAT0035200 Eptesicus fuscus miR-142 12 80
ssa-miR-454-3p MIMAT0032642 Salmo salar miR-454-3p 12 80
ssa-miR-142b-3p MIMAT0032364 Salmo salar miR-142b-3p 12 80
bdi-miR7758-5p MIMAT0030262 Brachypodium distachyon miR7758-5p 12 80
ipu-miR-454b MIMAT0029511 Ictalurus punctatus miR-454b 12 80
ipu-miR-142 MIMAT0029419 Ictalurus punctatus miR-142 12 80
aja-miR-142 MIMAT0031136 Artibeus jamaicensis miR-142 12 80
mdo-miR-7299-5p MIMAT0028590 Monodelphis domestica miR-7299-5p 12 80
ccr-miR-726 MIMAT0026313 Cyprinus carpio miR-726 12 80
ccr-miR-454b MIMAT0026300 Cyprinus carpio miR-454b 12 80
ccr-miR-454a MIMAT0026299 Cyprinus carpio miR-454a 12 80
ccr-miR-142-3p MIMAT0026223 Cyprinus carpio miR-142-3p 12 80
gga-miR-6553-3p MIMAT0025614 Gallus gallus miR-6553-3p 12 80
ppy-miR-454 MIMAT0024367 Pongo pygmaeus miR-454 12 80
ggo-miR-454 MIMAT0024280 Gorilla gorilla miR-454 12 80
cgr-miR-142-3p MIMAT0023771 Cricetulus griseus miR-142-3p 12 80
hsa-miR-6080 MIMAT0023705 Homo sapiens miR-6080 12 80
sha-miR-454 MIMAT0022815 Sarcophilus harrisii miR-454 12 80
aca-miR-726 MIMAT0021986 Anolis carolinensis miR-726 12 80
aca-miR-454-3p MIMAT0021963 Anolis carolinensis miR-454-3p 12 80
aca-miR-142-3p MIMAT0021768 Anolis carolinensis miR-142-3p 12 80
gma-miR5044 MIMAT0021075 Glycine max miR5044 12 80
pma-miR-130b MIMAT0019456 Petromyzon marinus miR-130b 12 80
cin-miR-4220-5p MIMAT0016419 Ciona intestinalis miR-4220-5p 12 80
ppy-miR-142-3p MIMAT0015766 Pongo pygmaeus miR-142-3p 12 80
bmo-miR-3230 MIMAT0015412 Bombyx mori miR-3230 12 80
tgu-miR-454-3p MIMAT0014580 Taeniopygia guttata miR-454-3p 12 80
tgu-miR-142-3p MIMAT0026999 Taeniopygia guttata miR-142-3p 12 80
ssc-miR-142-3p MIMAT0020362 Sus scrofa miR-142-3p 12 80
eca-miR-454 MIMAT0013042 Equus caballus miR-454 12 80
eca-miR-142-3p MIMAT0013023 Equus caballus miR-142-3p 12 80
bmo-miR-2804-5p MIMAT0013709 Bombyx mori miR-2804-5p 12 80
mtr-miR2617b MIMAT0013336 Medicago truncatula miR2617b 12 80
mtr-miR2617c MIMAT0013335 Medicago truncatula miR2617c 12 80
mtr-miR2617a MIMAT0013334 Medicago truncatula miR2617a 12 80
cfa-miR-454 MIMAT0009927 Canis familiaris miR-454 12 80
mmu-miR-1951 MIMAT0009422 Mus musculus miR-1951 12 80
bta-miR-454 MIMAT0009326 Bos taurus miR-454 12 80
ptr-miR-454 MIMAT0008156 Pan troglodytes miR-454 12 80
ptr-miR-142 MIMAT0008037 Pan troglodytes miR-142 12 80
mml-miR-454-3p MIMAT0006338 Macaca mulatta miR-454-3p 12 80
mml-miR-142-3p MIMAT0006200 Macaca mulatta miR-142-3p 12 80
gga-miR-1776 MIMAT0007687 Gallus gallus miR-1776 12 80
gga-miR-1457 MIMAT0007335 Gallus gallus miR-1457 12 80
gga-miR-454-3p MIMAT0007292 Gallus gallus miR-454-3p 12 80
oan-miR-454-3p MIMAT0007157 Ornithorhynchus anatinus miR-454-3p 12 80
oan-miR-142-3p MIMAT0006983 Ornithorhynchus anatinus miR-142-3p 12 80
tae-miR1118 MIMAT0005353 Triticum aestivum miR1118 12 80
smo-miR1086 MIMAT0005238 Selaginella moellendorffii miR1086 12 80
ppt-miR1044-3p MIMAT0005157 Physcomitrella patens miR1044-3p 12 80
mdo-miR-142 MIMAT0004112 Monodelphis domestica miR-142 12 80
xtr-miR-142-3p MIMAT0003603 Xenopus tropicalis miR-142-3p 12 80
dre-miR-726 MIMAT0003754 Danio rerio miR-726 12 80
hsa-miR-454-3p MIMAT0003885 Homo sapiens miR-454-3p 12 80
rlcv-miR-rL1-10-3p MIMAT0003439 Rhesus lymphocryptovirus miR-rL1... 12 80
dre-miR-454b MIMAT0001878 Danio rerio miR-454b 12 80
dre-miR-454a MIMAT0001877 Danio rerio miR-454a 12 80
dre-miR-142a-3p MIMAT0003160 Danio rerio miR-142a-3p 12 80
gga-miR-142-3p MIMAT0001194 Gallus gallus miR-142-3p 12 80
rno-miR-142-3p MIMAT0000848 Rattus norvegicus miR-142-3p 12 80
hsa-miR-142-3p MIMAT0000434 Homo sapiens miR-142-3p 12 80
mmu-miR-142a-3p MIMAT0000155 Mus musculus miR-142a-3p 12 80
>mdv2-miR-M25-3p MIMAT0004470 Mareks disease miR-M25-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcactac 7
|||||||
Sbjct: 2 gcactac 8
>oha-miR-142-3p MIMAT0036722 Ophiophagus hannah miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>tch-miR-142 MIMAT0036470 Tupaia chinensis miR-142
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 6 cactac 1
>chi-miR-454-3p MIMAT0036240 Capra hircus miR-454-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>bdi-miR9484 MIMAT0035491 Brachypodium distachyon miR9484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>efu-miR-142 MIMAT0035200 Eptesicus fuscus miR-142
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>ssa-miR-454-3p MIMAT0032642 Salmo salar miR-454-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>ssa-miR-142b-3p MIMAT0032364 Salmo salar miR-142b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>bdi-miR7758-5p MIMAT0030262 Brachypodium distachyon miR7758-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactac 7
||||||
Sbjct: 1 cactac 6
>ipu-miR-454b MIMAT0029511 Ictalurus punctatus miR-454b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>ipu-miR-142 MIMAT0029419 Ictalurus punctatus miR-142
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 6 cactac 1
>aja-miR-142 MIMAT0031136 Artibeus jamaicensis miR-142
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>mdo-miR-7299-5p MIMAT0028590 Monodelphis domestica miR-7299-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>ccr-miR-726 MIMAT0026313 Cyprinus carpio miR-726
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactac 7
||||||
Sbjct: 3 cactac 8
>ccr-miR-454b MIMAT0026300 Cyprinus carpio miR-454b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>ccr-miR-454a MIMAT0026299 Cyprinus carpio miR-454a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>ccr-miR-142-3p MIMAT0026223 Cyprinus carpio miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 6 cactac 1
>gga-miR-6553-3p MIMAT0025614 Gallus gallus miR-6553-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactac 7
||||||
Sbjct: 3 cactac 8
>ppy-miR-454 MIMAT0024367 Pongo pygmaeus miR-454
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>ggo-miR-454 MIMAT0024280 Gorilla gorilla miR-454
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>cgr-miR-142-3p MIMAT0023771 Cricetulus griseus miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 6 cactac 1
>hsa-miR-6080 MIMAT0023705 Homo sapiens miR-6080
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 8 gcacta 3
>sha-miR-454 MIMAT0022815 Sarcophilus harrisii miR-454
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>aca-miR-726 MIMAT0021986 Anolis carolinensis miR-726
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactac 7
||||||
Sbjct: 3 cactac 8
>aca-miR-454-3p MIMAT0021963 Anolis carolinensis miR-454-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>aca-miR-142-3p MIMAT0021768 Anolis carolinensis miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>gma-miR5044 MIMAT0021075 Glycine max miR5044
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 6 cactac 1
>pma-miR-130b MIMAT0019456 Petromyzon marinus miR-130b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>cin-miR-4220-5p MIMAT0016419 Ciona intestinalis miR-4220-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>ppy-miR-142-3p MIMAT0015766 Pongo pygmaeus miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>bmo-miR-3230 MIMAT0015412 Bombyx mori miR-3230
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 8 cactac 3
>tgu-miR-454-3p MIMAT0014580 Taeniopygia guttata miR-454-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>tgu-miR-142-3p MIMAT0026999 Taeniopygia guttata miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 6 cactac 1
>ssc-miR-142-3p MIMAT0020362 Sus scrofa miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>eca-miR-454 MIMAT0013042 Equus caballus miR-454
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>eca-miR-142-3p MIMAT0013023 Equus caballus miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>bmo-miR-2804-5p MIMAT0013709 Bombyx mori miR-2804-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 6 cactac 1
>mtr-miR2617b MIMAT0013336 Medicago truncatula miR2617b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>mtr-miR2617c MIMAT0013335 Medicago truncatula miR2617c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>mtr-miR2617a MIMAT0013334 Medicago truncatula miR2617a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>cfa-miR-454 MIMAT0009927 Canis familiaris miR-454
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>mmu-miR-1951 MIMAT0009422 Mus musculus miR-1951
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 6 cactac 1
>bta-miR-454 MIMAT0009326 Bos taurus miR-454
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>ptr-miR-454 MIMAT0008156 Pan troglodytes miR-454
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>ptr-miR-142 MIMAT0008037 Pan troglodytes miR-142
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>mml-miR-454-3p MIMAT0006338 Macaca mulatta miR-454-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>mml-miR-142-3p MIMAT0006200 Macaca mulatta miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>gga-miR-1776 MIMAT0007687 Gallus gallus miR-1776
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>gga-miR-1457 MIMAT0007335 Gallus gallus miR-1457
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactac 7
||||||
Sbjct: 1 cactac 6
>gga-miR-454-3p MIMAT0007292 Gallus gallus miR-454-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>oan-miR-454-3p MIMAT0007157 Ornithorhynchus anatinus miR-454-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>oan-miR-142-3p MIMAT0006983 Ornithorhynchus anatinus miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>tae-miR1118 MIMAT0005353 Triticum aestivum miR1118
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactac 7
||||||
Sbjct: 1 cactac 6
>smo-miR1086 MIMAT0005238 Selaginella moellendorffii miR1086
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>ppt-miR1044-3p MIMAT0005157 Physcomitrella patens miR1044-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 8 cactac 3
>mdo-miR-142 MIMAT0004112 Monodelphis domestica miR-142
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>xtr-miR-142-3p MIMAT0003603 Xenopus tropicalis miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>dre-miR-726 MIMAT0003754 Danio rerio miR-726
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cactac 7
||||||
Sbjct: 3 cactac 8
>hsa-miR-454-3p MIMAT0003885 Homo sapiens miR-454-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>rlcv-miR-rL1-10-3p MIMAT0003439 Rhesus lymphocryptovirus
miR-rL1-10-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>dre-miR-454b MIMAT0001878 Danio rerio miR-454b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>dre-miR-454a MIMAT0001877 Danio rerio miR-454a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcacta 6
||||||
Sbjct: 6 gcacta 1
>dre-miR-142a-3p MIMAT0003160 Danio rerio miR-142a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>gga-miR-142-3p MIMAT0001194 Gallus gallus miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>rno-miR-142-3p MIMAT0000848 Rattus norvegicus miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>hsa-miR-142-3p MIMAT0000434 Homo sapiens miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
>mmu-miR-142a-3p MIMAT0000155 Mus musculus miR-142a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cactac 7
||||||
Sbjct: 7 cactac 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 76
Number of extensions: 75
Number of successful extensions: 67
Number of sequences better than 100.0: 67
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 67
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
