BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rhcmv-miR-rh96-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-6608-3p MIMAT0025703 Gallus gallus miR-6608-3p 16 6.9
ata-miR408-3p MIMAT0037189 Aegilops tauschii miR408-3p 14 27
eca-miR-3548 MIMAT0034603 Equus caballus miR-3548 14 27
gra-miR8741 MIMAT0034153 Gossypium raimondii miR8741 14 27
stu-miR408b-3p MIMAT0031340 Solanum tuberosum miR408b-3p 14 27
mmu-miR-6357 MIMAT0025100 Mus musculus miR-6357 14 27
mmu-miR-6345 MIMAT0025088 Mus musculus miR-6345 14 27
nta-miR408 MIMAT0024720 Nicotiana tabacum miR408 14 27
pgi-miR6143b-3p MIMAT0027269 Panax ginseng miR6143b-3p 14 27
cca-miR408 MIMAT0024534 Cynara cardunculus miR408 14 27
gma-miR408d MIMAT0020998 Glycine max miR408d 14 27
tca-miR-3860-5p MIMAT0018792 Tribolium castaneum miR-3860-5p 14 27
rno-miR-3548 MIMAT0017806 Rattus norvegicus miR-3548 14 27
bmo-miR-2785 MIMAT0013681 Bombyx mori miR-2785 14 27
bta-miR-2416 MIMAT0011980 Bos taurus miR-2416 14 27
sko-miR-33-3p MIMAT0009615 Saccoglossus kowalevskii miR-33-3p 14 27
mmu-miR-1960 MIMAT0009433 Mus musculus miR-1960 14 27
osa-miR1855 MIMAT0007777 Oryza sativa miR1855 14 27
gga-miR-1737 MIMAT0007640 Gallus gallus miR-1737 14 27
oan-miR-1419d-5p MIMAT0007253 Ornithorhynchus anatinus miR-1419d-5p 14 27
smo-miR408 MIMAT0005228 Selaginella moellendorffii miR408 14 27
ppt-miR408b MIMAT0005050 Physcomitrella patens miR408b 14 27
>gga-miR-6608-3p MIMAT0025703 Gallus gallus miR-6608-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gcagtgct 8
||||||||
Sbjct: 8 gcagtgct 1
>ata-miR408-3p MIMAT0037189 Aegilops tauschii miR408-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcagtgc 7
|||||||
Sbjct: 8 gcagtgc 2
>eca-miR-3548 MIMAT0034603 Equus caballus miR-3548
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagtgct 8
|||||||
Sbjct: 8 cagtgct 2
>gra-miR8741 MIMAT0034153 Gossypium raimondii miR8741
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagtgct 8
|||||||
Sbjct: 8 cagtgct 2
>stu-miR408b-3p MIMAT0031340 Solanum tuberosum miR408b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcagtgc 7
|||||||
Sbjct: 8 gcagtgc 2
>mmu-miR-6357 MIMAT0025100 Mus musculus miR-6357
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagtgct 8
|||||||
Sbjct: 8 cagtgct 2
>mmu-miR-6345 MIMAT0025088 Mus musculus miR-6345
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagtgct 8
|||||||
Sbjct: 8 cagtgct 2
>nta-miR408 MIMAT0024720 Nicotiana tabacum miR408
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcagtgc 7
|||||||
Sbjct: 8 gcagtgc 2
>pgi-miR6143b-3p MIMAT0027269 Panax ginseng miR6143b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagtgct 8
|||||||
Sbjct: 8 cagtgct 2
>cca-miR408 MIMAT0024534 Cynara cardunculus miR408
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcagtgc 7
|||||||
Sbjct: 8 gcagtgc 2
>gma-miR408d MIMAT0020998 Glycine max miR408d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcagtgc 7
|||||||
Sbjct: 8 gcagtgc 2
>tca-miR-3860-5p MIMAT0018792 Tribolium castaneum miR-3860-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagtgct 8
|||||||
Sbjct: 8 cagtgct 2
>rno-miR-3548 MIMAT0017806 Rattus norvegicus miR-3548
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagtgct 8
|||||||
Sbjct: 8 cagtgct 2
>bmo-miR-2785 MIMAT0013681 Bombyx mori miR-2785
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcagtgc 7
|||||||
Sbjct: 2 gcagtgc 8
>bta-miR-2416 MIMAT0011980 Bos taurus miR-2416
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcagtgc 7
|||||||
Sbjct: 2 gcagtgc 8
>sko-miR-33-3p MIMAT0009615 Saccoglossus kowalevskii miR-33-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagtgct 8
|||||||
Sbjct: 1 cagtgct 7
>mmu-miR-1960 MIMAT0009433 Mus musculus miR-1960
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagtgct 8
|||||||
Sbjct: 2 cagtgct 8
>osa-miR1855 MIMAT0007777 Oryza sativa miR1855
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagtgct 8
|||||||
Sbjct: 7 cagtgct 1
>gga-miR-1737 MIMAT0007640 Gallus gallus miR-1737
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagtgct 8
|||||||
Sbjct: 8 cagtgct 2
>oan-miR-1419d-5p MIMAT0007253 Ornithorhynchus anatinus
miR-1419d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagtgct 8
|||||||
Sbjct: 2 cagtgct 8
>smo-miR408 MIMAT0005228 Selaginella moellendorffii miR408
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcagtgc 7
|||||||
Sbjct: 8 gcagtgc 2
>ppt-miR408b MIMAT0005050 Physcomitrella patens miR408b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcagtgc 7
|||||||
Sbjct: 8 gcagtgc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 672
Number of extensions: 649
Number of successful extensions: 550
Number of sequences better than 100.0: 22
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
