BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m12
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-1993-3p MIMAT0035301 Gyrodactylus salaris miR-1993-3p 14 20
sma-miR-2162-3p MIMAT0033666 Schistosoma mansoni miR-2162-3p 14 20
str-miR-8378-3p MIMAT0033409 Strongyloides ratti miR-8378-3p 14 20
prd-miR-60-3p MIMAT0030589 Panagrellus redivivus miR-60-3p 14 20
cbn-miR-60 MIMAT0029774 Caenorhabditis brenneri miR-60 14 20
hme-miR-2763 MIMAT0024955 Heliconius melpomene miR-2763 14 20
hco-miR-60 MIMAT0023468 Haemonchus contortus miR-60 14 20
isc-miR-1993 MIMAT0016929 Ixodes scapularis miR-1993 14 20
sja-miR-2162-3p MIMAT0016273 Schistosoma japonicum miR-2162-3p 14 20
bmo-miR-3371 MIMAT0015558 Bombyx mori miR-3371 14 20
bmo-miR-2763-3p MIMAT0013638 Bombyx mori miR-2763-3p 14 20
crm-miR-60-3p MIMAT0011562 Caenorhabditis remanei miR-60-3p 14 20
sme-miR-1993-3p MIMAT0011241 Schmidtea mediterranea miR-1993-3p 14 20
lgi-miR-1993 MIMAT0009723 Lottia gigantea miR-1993 14 20
cte-miR-1993 MIMAT0009701 Capitella teleta miR-1993 14 20
oan-miR-1421ah-3p MIMAT0007304 Ornithorhynchus anatinus miR-1421... 14 20
mdv1-miR-M12-3p MIMAT0005984 Mareks disease miR-M12-3p 14 20
sme-miR-1b-5p MIMAT0012091 Schmidtea mediterranea miR-1b-5p 14 20
cbr-miR-60 MIMAT0000479 Caenorhabditis briggsae miR-60 14 20
cel-miR-60-3p MIMAT0000032 Caenorhabditis elegans miR-60-3p 14 20
dme-miR-9384-5p MIMAT0035231 Drosophila melanogaster miR-9384-5p 12 80
gra-miR8652 MIMAT0034011 Gossypium raimondii miR8652 12 80
str-miR-72-3p MIMAT0033347 Strongyloides ratti miR-72-3p 12 80
bma-miR-60 MIMAT0031759 Brugia malayi miR-60 12 80
stu-miR8040-5p MIMAT0031220 Solanum tuberosum miR8040-5p 12 80
ptc-miR6462f MIMAT0030376 Populus trichocarpa miR6462f 12 80
ptc-miR6462e MIMAT0030375 Populus trichocarpa miR6462e 12 80
mse-miR-2763 MIMAT0024489 Manduca sexta miR-2763 12 80
aca-miR-146b-3p MIMAT0021778 Anolis carolinensis miR-146b-3p 12 80
mtr-miR5231 MIMAT0021216 Medicago truncatula miR5231 12 80
hvu-miR1436 MIMAT0018501 Hordeum vulgare miR1436 12 80
vvi-miR3635-3p MIMAT0018044 Vitis vinifera miR3635-3p 12 80
cin-miR-4182-5p MIMAT0016796 Ciona intestinalis miR-4182-5p 12 80
cin-miR-4172-3p MIMAT0016780 Ciona intestinalis miR-4172-3p 12 80
aly-miR3435-5p MIMAT0017701 Arabidopsis lyrata miR3435-5p 12 80
bmo-miR-2771-3p MIMAT0013655 Bombyx mori miR-2771-3p 12 80
sme-miR-2162-3p MIMAT0012153 Schmidtea mediterranea miR-2162-3p 12 80
nve-miR-2030-5p MIMAT0009780 Nematostella vectensis miR-2030-5p 12 80
osa-miR1436 MIMAT0005987 Oryza sativa miR1436 12 80
oan-miR-1357 MIMAT0006960 Ornithorhynchus anatinus miR-1357 12 80
dre-miR-96-3p MIMAT0031956 Danio rerio miR-96-3p 12 80
>gsa-miR-1993-3p MIMAT0035301 Gyrodactylus salaris miR-1993-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>sma-miR-2162-3p MIMAT0033666 Schistosoma mansoni miR-2162-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>str-miR-8378-3p MIMAT0033409 Strongyloides ratti miR-8378-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>prd-miR-60-3p MIMAT0030589 Panagrellus redivivus miR-60-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>cbn-miR-60 MIMAT0029774 Caenorhabditis brenneri miR-60
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>hme-miR-2763 MIMAT0024955 Heliconius melpomene miR-2763
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>hco-miR-60 MIMAT0023468 Haemonchus contortus miR-60
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>isc-miR-1993 MIMAT0016929 Ixodes scapularis miR-1993
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>sja-miR-2162-3p MIMAT0016273 Schistosoma japonicum miR-2162-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>bmo-miR-3371 MIMAT0015558 Bombyx mori miR-3371
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcataat 7
|||||||
Sbjct: 2 gcataat 8
>bmo-miR-2763-3p MIMAT0013638 Bombyx mori miR-2763-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>crm-miR-60-3p MIMAT0011562 Caenorhabditis remanei miR-60-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>sme-miR-1993-3p MIMAT0011241 Schmidtea mediterranea miR-1993-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>lgi-miR-1993 MIMAT0009723 Lottia gigantea miR-1993
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>cte-miR-1993 MIMAT0009701 Capitella teleta miR-1993
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>oan-miR-1421ah-3p MIMAT0007304 Ornithorhynchus anatinus
miR-1421ah-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcataat 7
|||||||
Sbjct: 2 gcataat 8
>mdv1-miR-M12-3p MIMAT0005984 Mareks disease miR-M12-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcataat 7
|||||||
Sbjct: 2 gcataat 8
>sme-miR-1b-5p MIMAT0012091 Schmidtea mediterranea miR-1b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcataat 7
|||||||
Sbjct: 2 gcataat 8
>cbr-miR-60 MIMAT0000479 Caenorhabditis briggsae miR-60
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>cel-miR-60-3p MIMAT0000032 Caenorhabditis elegans miR-60-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcataat 7
|||||||
Sbjct: 8 gcataat 2
>dme-miR-9384-5p MIMAT0035231 Drosophila melanogaster
miR-9384-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcataa 6
||||||
Sbjct: 3 gcataa 8
>gra-miR8652 MIMAT0034011 Gossypium raimondii miR8652
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataat 7
||||||
Sbjct: 6 cataat 1
>str-miR-72-3p MIMAT0033347 Strongyloides ratti miR-72-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcataa 6
||||||
Sbjct: 8 gcataa 3
>bma-miR-60 MIMAT0031759 Brugia malayi miR-60
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataat 7
||||||
Sbjct: 8 cataat 3
>stu-miR8040-5p MIMAT0031220 Solanum tuberosum miR8040-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cataat 7
||||||
Sbjct: 2 cataat 7
>ptc-miR6462f MIMAT0030376 Populus trichocarpa miR6462f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcataa 6
||||||
Sbjct: 8 gcataa 3
>ptc-miR6462e MIMAT0030375 Populus trichocarpa miR6462e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcataa 6
||||||
Sbjct: 8 gcataa 3
>mse-miR-2763 MIMAT0024489 Manduca sexta miR-2763
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataat 7
||||||
Sbjct: 8 cataat 3
>aca-miR-146b-3p MIMAT0021778 Anolis carolinensis miR-146b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cataat 7
||||||
Sbjct: 3 cataat 8
>mtr-miR5231 MIMAT0021216 Medicago truncatula miR5231
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcataa 6
||||||
Sbjct: 6 gcataa 1
>hvu-miR1436 MIMAT0018501 Hordeum vulgare miR1436
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataat 7
||||||
Sbjct: 8 cataat 3
>vvi-miR3635-3p MIMAT0018044 Vitis vinifera miR3635-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataat 7
||||||
Sbjct: 6 cataat 1
>cin-miR-4182-5p MIMAT0016796 Ciona intestinalis miR-4182-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cataat 7
||||||
Sbjct: 1 cataat 6
>cin-miR-4172-3p MIMAT0016780 Ciona intestinalis miR-4172-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataat 7
||||||
Sbjct: 7 cataat 2
>aly-miR3435-5p MIMAT0017701 Arabidopsis lyrata miR3435-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcataa 6
||||||
Sbjct: 3 gcataa 8
>bmo-miR-2771-3p MIMAT0013655 Bombyx mori miR-2771-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataat 7
||||||
Sbjct: 8 cataat 3
>sme-miR-2162-3p MIMAT0012153 Schmidtea mediterranea miR-2162-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataat 7
||||||
Sbjct: 8 cataat 3
>nve-miR-2030-5p MIMAT0009780 Nematostella vectensis miR-2030-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcataa 6
||||||
Sbjct: 3 gcataa 8
>osa-miR1436 MIMAT0005987 Oryza sativa miR1436
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataat 7
||||||
Sbjct: 8 cataat 3
>oan-miR-1357 MIMAT0006960 Ornithorhynchus anatinus miR-1357
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataat 7
||||||
Sbjct: 6 cataat 1
>dre-miR-96-3p MIMAT0031956 Danio rerio miR-96-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataat 7
||||||
Sbjct: 8 cataat 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 71
Number of extensions: 51
Number of successful extensions: 41
Number of sequences better than 100.0: 41
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 41
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
