BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv1-miR-m13
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppc-miR-8288-5p MIMAT0033085 Pristionchus pacificus miR-8288-5p        16   6.9  
hsa-miR-5581-3p MIMAT0022276 Homo sapiens miR-5581-3p                  16   6.9  
mdv1-miR-M13 MIMAT0005985 Mareks disease miR-M13                       16   6.9  
efu-miR-9243a MIMAT0034858 Eptesicus fuscus miR-9243a                  14      27
eca-miR-9155 MIMAT0034731 Equus caballus miR-9155                      14      27
gra-miR8768 MIMAT0034204 Gossypium raimondii miR8768                   14      27
esi-miR8623b MIMAT0033972 Ectocarpus siliculosus miR8623b              14      27
mdo-miR-7343-5p MIMAT0028696 Monodelphis domestica miR-7343-5p         14      27
dev-miR-D21-3p MIMAT0028197 Duck enteritis miR-D21-3p                  14      27
sly-miR6023 MIMAT0023592 Solanum lycopersicum miR6023                  14      27
stu-miR6023 MIMAT0023591 Solanum tuberosum miR6023                     14      27
gma-miR5678 MIMAT0022466 Glycine max miR5678                           14      27
gma-miR5671a MIMAT0022453 Glycine max miR5671a                         14      27
mtr-miR5219 MIMAT0021177 Medicago truncatula miR5219                   14      27
cin-miR-4192-3p MIMAT0016810 Ciona intestinalis miR-4192-3p            14      27
bmo-miR-3378-5p MIMAT0015569 Bombyx mori miR-3378-5p                   14      27
aqu-miR-2021-5p MIMAT0009753 Amphimedon queenslandica miR-2021-5p      14      27
gga-miR-1626-5p MIMAT0007495 Gallus gallus miR-1626-5p                 14      27
cel-miR-51-3p MIMAT0015099 Caenorhabditis elegans miR-51-3p            14      27
>ppc-miR-8288-5p MIMAT0033085 Pristionchus pacificus miR-8288-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcatggaa 8
         ||||||||
Sbjct: 1 gcatggaa 8
>hsa-miR-5581-3p MIMAT0022276 Homo sapiens miR-5581-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gcatggaa 8
         ||||||||
Sbjct: 8 gcatggaa 1
>mdv1-miR-M13 MIMAT0005985 Mareks disease miR-M13
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcatggaa 8
         ||||||||
Sbjct: 1 gcatggaa 8
>efu-miR-9243a MIMAT0034858 Eptesicus fuscus miR-9243a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 8 catggaa 2
>eca-miR-9155 MIMAT0034731 Equus caballus miR-9155
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcatgga 7
         |||||||
Sbjct: 7 gcatgga 1
>gra-miR8768 MIMAT0034204 Gossypium raimondii miR8768
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 7 catggaa 1
>esi-miR8623b MIMAT0033972 Ectocarpus siliculosus miR8623b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 1 catggaa 7
>mdo-miR-7343-5p MIMAT0028696 Monodelphis domestica miR-7343-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 2 catggaa 8
>dev-miR-D21-3p MIMAT0028197 Duck enteritis miR-D21-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcatgga 7
         |||||||
Sbjct: 8 gcatgga 2
>sly-miR6023 MIMAT0023592 Solanum lycopersicum miR6023
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 7 catggaa 1
>stu-miR6023 MIMAT0023591 Solanum tuberosum miR6023
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 7 catggaa 1
>gma-miR5678 MIMAT0022466 Glycine max miR5678
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 7 catggaa 1
>gma-miR5671a MIMAT0022453 Glycine max miR5671a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 1 catggaa 7
>mtr-miR5219 MIMAT0021177 Medicago truncatula miR5219
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 2 catggaa 8
>cin-miR-4192-3p MIMAT0016810 Ciona intestinalis miR-4192-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 2 catggaa 8
>bmo-miR-3378-5p MIMAT0015569 Bombyx mori miR-3378-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 7 catggaa 1
>aqu-miR-2021-5p MIMAT0009753 Amphimedon queenslandica
         miR-2021-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 1 catggaa 7
>gga-miR-1626-5p MIMAT0007495 Gallus gallus miR-1626-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 8 catggaa 2
>cel-miR-51-3p MIMAT0015099 Caenorhabditis elegans miR-51-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 catggaa 8
         |||||||
Sbjct: 1 catggaa 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 147
Number of extensions: 125
Number of successful extensions: 82
Number of sequences better than 100.0: 19
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)