BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m13
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8288-5p MIMAT0033085 Pristionchus pacificus miR-8288-5p 16 6.9
hsa-miR-5581-3p MIMAT0022276 Homo sapiens miR-5581-3p 16 6.9
mdv1-miR-M13 MIMAT0005985 Mareks disease miR-M13 16 6.9
efu-miR-9243a MIMAT0034858 Eptesicus fuscus miR-9243a 14 27
eca-miR-9155 MIMAT0034731 Equus caballus miR-9155 14 27
gra-miR8768 MIMAT0034204 Gossypium raimondii miR8768 14 27
esi-miR8623b MIMAT0033972 Ectocarpus siliculosus miR8623b 14 27
mdo-miR-7343-5p MIMAT0028696 Monodelphis domestica miR-7343-5p 14 27
dev-miR-D21-3p MIMAT0028197 Duck enteritis miR-D21-3p 14 27
sly-miR6023 MIMAT0023592 Solanum lycopersicum miR6023 14 27
stu-miR6023 MIMAT0023591 Solanum tuberosum miR6023 14 27
gma-miR5678 MIMAT0022466 Glycine max miR5678 14 27
gma-miR5671a MIMAT0022453 Glycine max miR5671a 14 27
mtr-miR5219 MIMAT0021177 Medicago truncatula miR5219 14 27
cin-miR-4192-3p MIMAT0016810 Ciona intestinalis miR-4192-3p 14 27
bmo-miR-3378-5p MIMAT0015569 Bombyx mori miR-3378-5p 14 27
aqu-miR-2021-5p MIMAT0009753 Amphimedon queenslandica miR-2021-5p 14 27
gga-miR-1626-5p MIMAT0007495 Gallus gallus miR-1626-5p 14 27
cel-miR-51-3p MIMAT0015099 Caenorhabditis elegans miR-51-3p 14 27
>ppc-miR-8288-5p MIMAT0033085 Pristionchus pacificus miR-8288-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcatggaa 8
||||||||
Sbjct: 1 gcatggaa 8
>hsa-miR-5581-3p MIMAT0022276 Homo sapiens miR-5581-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gcatggaa 8
||||||||
Sbjct: 8 gcatggaa 1
>mdv1-miR-M13 MIMAT0005985 Mareks disease miR-M13
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcatggaa 8
||||||||
Sbjct: 1 gcatggaa 8
>efu-miR-9243a MIMAT0034858 Eptesicus fuscus miR-9243a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 catggaa 8
|||||||
Sbjct: 8 catggaa 2
>eca-miR-9155 MIMAT0034731 Equus caballus miR-9155
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcatgga 7
|||||||
Sbjct: 7 gcatgga 1
>gra-miR8768 MIMAT0034204 Gossypium raimondii miR8768
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 catggaa 8
|||||||
Sbjct: 7 catggaa 1
>esi-miR8623b MIMAT0033972 Ectocarpus siliculosus miR8623b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 catggaa 8
|||||||
Sbjct: 1 catggaa 7
>mdo-miR-7343-5p MIMAT0028696 Monodelphis domestica miR-7343-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 catggaa 8
|||||||
Sbjct: 2 catggaa 8
>dev-miR-D21-3p MIMAT0028197 Duck enteritis miR-D21-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcatgga 7
|||||||
Sbjct: 8 gcatgga 2
>sly-miR6023 MIMAT0023592 Solanum lycopersicum miR6023
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 catggaa 8
|||||||
Sbjct: 7 catggaa 1
>stu-miR6023 MIMAT0023591 Solanum tuberosum miR6023
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 catggaa 8
|||||||
Sbjct: 7 catggaa 1
>gma-miR5678 MIMAT0022466 Glycine max miR5678
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 catggaa 8
|||||||
Sbjct: 7 catggaa 1
>gma-miR5671a MIMAT0022453 Glycine max miR5671a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 catggaa 8
|||||||
Sbjct: 1 catggaa 7
>mtr-miR5219 MIMAT0021177 Medicago truncatula miR5219
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 catggaa 8
|||||||
Sbjct: 2 catggaa 8
>cin-miR-4192-3p MIMAT0016810 Ciona intestinalis miR-4192-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 catggaa 8
|||||||
Sbjct: 2 catggaa 8
>bmo-miR-3378-5p MIMAT0015569 Bombyx mori miR-3378-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 catggaa 8
|||||||
Sbjct: 7 catggaa 1
>aqu-miR-2021-5p MIMAT0009753 Amphimedon queenslandica
miR-2021-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 catggaa 8
|||||||
Sbjct: 1 catggaa 7
>gga-miR-1626-5p MIMAT0007495 Gallus gallus miR-1626-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 catggaa 8
|||||||
Sbjct: 8 catggaa 2
>cel-miR-51-3p MIMAT0015099 Caenorhabditis elegans miR-51-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 catggaa 8
|||||||
Sbjct: 1 catggaa 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 147
Number of extensions: 125
Number of successful extensions: 82
Number of sequences better than 100.0: 19
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)