BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-1-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-181a-1-3p MIMAT0036758 Ophiophagus hannah miR-181a-1-3p 14 27
gsa-miR-278-3p MIMAT0035295 Gyrodactylus salaris miR-278-3p 14 27
efu-miR-181f MIMAT0035008 Eptesicus fuscus miR-181f 14 27
eca-miR-9071 MIMAT0034616 Equus caballus miR-9071 14 27
gra-miR8748 MIMAT0034172 Gossypium raimondii miR8748 14 27
bbe-miR-278-5p MIMAT0031659 Branchiostoma belcheri miR-278-5p 14 27
lva-miR-278-3p MIMAT0032219 Lytechinus variegatus miR-278-3p 14 27
pmi-miR-278-3p MIMAT0032172 Patiria miniata miR-278-3p 14 27
oan-miR-181a-3-3p MIMAT0031027 Ornithorhynchus anatinus miR-181a... 14 27
hme-miR-278 MIMAT0024960 Heliconius melpomene miR-278 14 27
mse-miR-278 MIMAT0024451 Manduca sexta miR-278 14 27
tur-miR-5730-3p MIMAT0023051 Tetranychus urticae miR-5730-3p 14 27
tur-miR-278-3p MIMAT0023031 Tetranychus urticae miR-278-3p 14 27
dme-miR-4976-3p MIMAT0020207 Drosophila melanogaster miR-4976-3p 14 27
isc-miR-278 MIMAT0016930 Ixodes scapularis miR-278 14 27
api-miR-278 MIMAT0014723 Acyrthosiphon pisum miR-278 14 27
cqu-miR-278 MIMAT0014377 Culex quinquefasciatus miR-278 14 27
aae-miR-278-3p MIMAT0014238 Aedes aegypti miR-278-3p 14 27
ssc-miR-181d-3p MIMAT0017375 Sus scrofa miR-181d-3p 14 27
bmo-miR-2774c MIMAT0013759 Bombyx mori miR-2774c 14 27
bmo-miR-2774a MIMAT0013658 Bombyx mori miR-2774a 14 27
dpu-miR-278 MIMAT0012653 Daphnia pulex miR-278 14 27
bfl-miR-278 MIMAT0010135 Branchiostoma floridae miR-278 14 27
spu-miR-278-3p MIMAT0009674 Strongylocentrotus purpuratus miR-27... 14 27
sko-miR-278 MIMAT0009640 Saccoglossus kowalevskii miR-278 14 27
lgi-miR-278 MIMAT0009592 Lottia gigantea miR-278 14 27
cte-miR-278 MIMAT0009538 Capitella teleta miR-278 14 27
bmo-miR-278-3p MIMAT0009164 Bombyx mori miR-278-3p 14 27
dya-miR-278 MIMAT0009086 Drosophila yakuba miR-278 14 27
dwi-miR-278 MIMAT0009029 Drosophila willistoni miR-278 14 27
dvi-miR-278-3p MIMAT0008937 Drosophila virilis miR-278-3p 14 27
dsi-miR-278 MIMAT0008891 Drosophila simulans miR-278 14 27
dse-miR-278 MIMAT0008781 Drosophila sechellia miR-278 14 27
dpe-miR-278 MIMAT0008726 Drosophila persimilis miR-278 14 27
dmo-miR-278 MIMAT0008676 Drosophila mojavensis miR-278 14 27
dgr-miR-278 MIMAT0008597 Drosophila grimshawi miR-278 14 27
der-miR-278 MIMAT0008530 Drosophila erecta miR-278 14 27
dan-miR-278 MIMAT0008470 Drosophila ananassae miR-278 14 27
rrv-miR-rR1-1-3p MIMAT0004407 Rhesus monkey miR-rR1-1-3p 14 27
sme-miR-278-3p MIMAT0004011 Schmidtea mediterranea miR-278-3p 14 27
aga-miR-278 MIMAT0001511 Anopheles gambiae miR-278 14 27
ame-miR-278 MIMAT0001482 Apis mellifera miR-278 14 27
dps-miR-278 MIMAT0001242 Drosophila pseudoobscura miR-278 14 27
dme-miR-278-3p MIMAT0000339 Drosophila melanogaster miR-278-3p 14 27
cel-miR-259-3p MIMAT0020342 Caenorhabditis elegans miR-259-3p 14 27
>oha-miR-181a-1-3p MIMAT0036758 Ophiophagus hannah miR-181a-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccaccga 8
|||||||
Sbjct: 2 ccaccga 8
>gsa-miR-278-3p MIMAT0035295 Gyrodactylus salaris miR-278-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 8 ccaccga 2
>efu-miR-181f MIMAT0035008 Eptesicus fuscus miR-181f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccaccga 8
|||||||
Sbjct: 2 ccaccga 8
>eca-miR-9071 MIMAT0034616 Equus caballus miR-9071
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gccaccg 7
|||||||
Sbjct: 2 gccaccg 8
>gra-miR8748 MIMAT0034172 Gossypium raimondii miR8748
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>bbe-miR-278-5p MIMAT0031659 Branchiostoma belcheri miR-278-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>lva-miR-278-3p MIMAT0032219 Lytechinus variegatus miR-278-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>pmi-miR-278-3p MIMAT0032172 Patiria miniata miR-278-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>oan-miR-181a-3-3p MIMAT0031027 Ornithorhynchus anatinus
miR-181a-3-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccaccga 8
|||||||
Sbjct: 1 ccaccga 7
>hme-miR-278 MIMAT0024960 Heliconius melpomene miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>mse-miR-278 MIMAT0024451 Manduca sexta miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>tur-miR-5730-3p MIMAT0023051 Tetranychus urticae miR-5730-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gccaccg 7
|||||||
Sbjct: 7 gccaccg 1
>tur-miR-278-3p MIMAT0023031 Tetranychus urticae miR-278-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dme-miR-4976-3p MIMAT0020207 Drosophila melanogaster
miR-4976-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>isc-miR-278 MIMAT0016930 Ixodes scapularis miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>api-miR-278 MIMAT0014723 Acyrthosiphon pisum miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>cqu-miR-278 MIMAT0014377 Culex quinquefasciatus miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>aae-miR-278-3p MIMAT0014238 Aedes aegypti miR-278-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>ssc-miR-181d-3p MIMAT0017375 Sus scrofa miR-181d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccaccga 8
|||||||
Sbjct: 2 ccaccga 8
>bmo-miR-2774c MIMAT0013759 Bombyx mori miR-2774c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 8 ccaccga 2
>bmo-miR-2774a MIMAT0013658 Bombyx mori miR-2774a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 8 ccaccga 2
>dpu-miR-278 MIMAT0012653 Daphnia pulex miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>bfl-miR-278 MIMAT0010135 Branchiostoma floridae miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>spu-miR-278-3p MIMAT0009674 Strongylocentrotus purpuratus
miR-278-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>sko-miR-278 MIMAT0009640 Saccoglossus kowalevskii miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>lgi-miR-278 MIMAT0009592 Lottia gigantea miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>cte-miR-278 MIMAT0009538 Capitella teleta miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>bmo-miR-278-3p MIMAT0009164 Bombyx mori miR-278-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dya-miR-278 MIMAT0009086 Drosophila yakuba miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dwi-miR-278 MIMAT0009029 Drosophila willistoni miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dvi-miR-278-3p MIMAT0008937 Drosophila virilis miR-278-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dsi-miR-278 MIMAT0008891 Drosophila simulans miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dse-miR-278 MIMAT0008781 Drosophila sechellia miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dpe-miR-278 MIMAT0008726 Drosophila persimilis miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dmo-miR-278 MIMAT0008676 Drosophila mojavensis miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dgr-miR-278 MIMAT0008597 Drosophila grimshawi miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>der-miR-278 MIMAT0008530 Drosophila erecta miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dan-miR-278 MIMAT0008470 Drosophila ananassae miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>rrv-miR-rR1-1-3p MIMAT0004407 Rhesus monkey miR-rR1-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gccaccg 7
|||||||
Sbjct: 2 gccaccg 8
>sme-miR-278-3p MIMAT0004011 Schmidtea mediterranea miR-278-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>aga-miR-278 MIMAT0001511 Anopheles gambiae miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>ame-miR-278 MIMAT0001482 Apis mellifera miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dps-miR-278 MIMAT0001242 Drosophila pseudoobscura miR-278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>dme-miR-278-3p MIMAT0000339 Drosophila melanogaster miR-278-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaccga 8
|||||||
Sbjct: 7 ccaccga 1
>cel-miR-259-3p MIMAT0020342 Caenorhabditis elegans miR-259-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccaccga 8
|||||||
Sbjct: 1 ccaccga 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 152
Number of extensions: 107
Number of successful extensions: 86
Number of sequences better than 100.0: 45
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 45
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
