BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h15
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sbi-miR6221-3p MIMAT0026409 Sorghum bicolor miR6221-3p 14 20
hsa-miR-6784-5p MIMAT0027468 Homo sapiens miR-6784-5p 14 20
hsa-miR-5587-3p MIMAT0022290 Homo sapiens miR-5587-3p 14 20
hsa-miR-5090 MIMAT0021082 Homo sapiens miR-5090 14 20
hsa-miR-4707-5p MIMAT0019807 Homo sapiens miR-4707-5p 14 20
hsv1-miR-H15 MIMAT0014693 Herpes Simplex miR-H15 14 20
bta-miR-2890 MIMAT0013848 Bos taurus miR-2890 14 20
oan-miR-1394 MIMAT0007196 Ornithorhynchus anatinus miR-1394 14 20
cre-miR1151b-5p MIMAT0005395 Chlamydomonas reinhardtii miR1151b-5p 14 20
cre-miR1151a-5p MIMAT0005393 Chlamydomonas reinhardtii miR1151a-5p 14 20
mmu-miR-673-3p MIMAT0004824 Mus musculus miR-673-3p 14 20
oha-miR-425-3p MIMAT0036922 Ophiophagus hannah miR-425-3p 12 80
oha-miR-146b-3p MIMAT0036730 Ophiophagus hannah miR-146b-3p 12 80
oha-miR-128-5p MIMAT0036678 Ophiophagus hannah miR-128-5p 12 80
tch-miR-486-3p MIMAT0036553 Tupaia chinensis miR-486-3p 12 80
chi-miR-128-5p MIMAT0035933 Capra hircus miR-128-5p 12 80
dme-miR-9382-3p MIMAT0035228 Drosophila melanogaster miR-9382-3p 12 80
eca-miR-744 MIMAT0034644 Equus caballus miR-744 12 80
pxy-miR-8532-5p MIMAT0033777 Plutella xylostella miR-8532-5p 12 80
ssa-miR-128-3-5p MIMAT0032316 Salmo salar miR-128-3-5p 12 80
ssa-miR-128-2-5p MIMAT0032315 Salmo salar miR-128-2-5p 12 80
ssa-miR-128-1-5p MIMAT0032313 Salmo salar miR-128-1-5p 12 80
prd-miR-7927b-5p MIMAT0030644 Panagrellus redivivus miR-7927b-5p 12 80
prd-miR-7927d-5p MIMAT0030612 Panagrellus redivivus miR-7927d-5p 12 80
prd-miR-7927c-5p MIMAT0030610 Panagrellus redivivus miR-7927c-5p 12 80
prd-miR-7927a-5p MIMAT0030546 Panagrellus redivivus miR-7927a-5p 12 80
mdo-miR-7346-5p MIMAT0028704 Monodelphis domestica miR-7346-5p 12 80
mdo-miR-128b-5p MIMAT0028608 Monodelphis domestica miR-128b-5p 12 80
mdo-miR-7277-3p MIMAT0028529 Monodelphis domestica miR-7277-3p 12 80
mmu-miR-7048-5p MIMAT0028000 Mus musculus miR-7048-5p 12 80
mmu-miR-7003-3p MIMAT0027911 Mus musculus miR-7003-3p 12 80
hsa-miR-6845-5p MIMAT0027590 Homo sapiens miR-6845-5p 12 80
hsa-miR-6840-5p MIMAT0027582 Homo sapiens miR-6840-5p 12 80
hsa-miR-6763-3p MIMAT0027427 Homo sapiens miR-6763-3p 12 80
hsa-miR-6762-5p MIMAT0027424 Homo sapiens miR-6762-5p 12 80
hsa-miR-6727-5p MIMAT0027355 Homo sapiens miR-6727-5p 12 80
prv-miR-LLT7 MIMAT0025310 Pseudorabies virus miR-LLT7 12 80
cgr-miR-744-5p MIMAT0024002 Cricetulus griseus miR-744-5p 12 80
cgr-miR-486-3p MIMAT0023968 Cricetulus griseus miR-486-3p 12 80
cgr-miR-128-5p MIMAT0023749 Cricetulus griseus miR-128-5p 12 80
aca-miR-146a-3p MIMAT0021776 Anolis carolinensis miR-146a-3p 12 80
bfl-miR-4903 MIMAT0020498 Branchiostoma floridae miR-4903 12 80
bfl-miR-4872b MIMAT0020115 Branchiostoma floridae miR-4872b 12 80
hsa-miR-4783-3p MIMAT0019947 Homo sapiens miR-4783-3p 12 80
hsa-miR-4655-5p MIMAT0019721 Homo sapiens miR-4655-5p 12 80
pma-miR-4544-3p MIMAT0019574 Petromyzon marinus miR-4544-3p 12 80
hsa-miR-4532 MIMAT0019071 Homo sapiens miR-4532 12 80
cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p 12 80
ppy-miR-744 MIMAT0016102 Pongo pygmaeus miR-744 12 80
ssc-miR-744 MIMAT0015708 Sus scrofa miR-744 12 80
hsa-miR-3196 MIMAT0015080 Homo sapiens miR-3196 12 80
mmu-miR-486b-3p MIMAT0014944 Mus musculus miR-486b-3p 12 80
tgu-miR-2992 MIMAT0014549 Taeniopygia guttata miR-2992 12 80
tgu-miR-128-1-5p MIMAT0031084 Taeniopygia guttata miR-128-1-5p 12 80
bta-miR-2889 MIMAT0013847 Bos taurus miR-2889 12 80
eca-miR-486-3p MIMAT0013187 Equus caballus miR-486-3p 12 80
bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724 12 80
hsv1-miR-H8-3p MIMAT0012598 Herpes Simplex miR-H8-3p 12 80
bta-miR-2299-3p MIMAT0011808 Bos taurus miR-2299-3p 12 80
bta-miR-744 MIMAT0009369 Bos taurus miR-744 12 80
ptr-miR-744 MIMAT0008317 Pan troglodytes miR-744 12 80
mml-miR-486-3p MIMAT0006345 Macaca mulatta miR-486-3p 12 80
gga-miR-1716 MIMAT0007613 Gallus gallus miR-1716 12 80
gga-miR-1595-3p MIMAT0007459 Gallus gallus miR-1595-3p 12 80
hsa-miR-1247-3p MIMAT0022721 Homo sapiens miR-1247-3p 12 80
hsa-miR-744-5p MIMAT0004945 Homo sapiens miR-744-5p 12 80
mmu-miR-744-5p MIMAT0004187 Mus musculus miR-744-5p 12 80
mmu-miR-486a-3p MIMAT0017206 Mus musculus miR-486a-3p 12 80
mml-miR-128a-5p MIMAT0026565 Macaca mulatta miR-128a-5p 12 80
hsa-miR-486-3p MIMAT0004762 Homo sapiens miR-486-3p 12 80
dre-miR-128-5p MIMAT0031967 Danio rerio miR-128-5p 12 80
gga-miR-128-1-5p MIMAT0031096 Gallus gallus miR-128-1-5p 12 80
rno-miR-128-1-5p MIMAT0017118 Rattus norvegicus miR-128-1-5p 12 80
hsa-miR-128-1-5p MIMAT0026477 Homo sapiens miR-128-1-5p 12 80
mmu-miR-128-1-5p MIMAT0016982 Mus musculus miR-128-1-5p 12 80
>sbi-miR6221-3p MIMAT0026409 Sorghum bicolor miR6221-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gccccgg 7
|||||||
Sbjct: 7 gccccgg 1
>hsa-miR-6784-5p MIMAT0027468 Homo sapiens miR-6784-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gccccgg 7
|||||||
Sbjct: 8 gccccgg 2
>hsa-miR-5587-3p MIMAT0022290 Homo sapiens miR-5587-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gccccgg 7
|||||||
Sbjct: 1 gccccgg 7
>hsa-miR-5090 MIMAT0021082 Homo sapiens miR-5090
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gccccgg 7
|||||||
Sbjct: 7 gccccgg 1
>hsa-miR-4707-5p MIMAT0019807 Homo sapiens miR-4707-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gccccgg 7
|||||||
Sbjct: 1 gccccgg 7
>hsv1-miR-H15 MIMAT0014693 Herpes Simplex miR-H15
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gccccgg 7
|||||||
Sbjct: 2 gccccgg 8
>bta-miR-2890 MIMAT0013848 Bos taurus miR-2890
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gccccgg 7
|||||||
Sbjct: 1 gccccgg 7
>oan-miR-1394 MIMAT0007196 Ornithorhynchus anatinus miR-1394
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gccccgg 7
|||||||
Sbjct: 8 gccccgg 2
>cre-miR1151b-5p MIMAT0005395 Chlamydomonas reinhardtii
miR1151b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gccccgg 7
|||||||
Sbjct: 8 gccccgg 2
>cre-miR1151a-5p MIMAT0005393 Chlamydomonas reinhardtii
miR1151a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gccccgg 7
|||||||
Sbjct: 8 gccccgg 2
>mmu-miR-673-3p MIMAT0004824 Mus musculus miR-673-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gccccgg 7
|||||||
Sbjct: 8 gccccgg 2
>oha-miR-425-3p MIMAT0036922 Ophiophagus hannah miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>oha-miR-146b-3p MIMAT0036730 Ophiophagus hannah miR-146b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gccccg 6
||||||
Sbjct: 1 gccccg 6
>oha-miR-128-5p MIMAT0036678 Ophiophagus hannah miR-128-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>tch-miR-486-3p MIMAT0036553 Tupaia chinensis miR-486-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>chi-miR-128-5p MIMAT0035933 Capra hircus miR-128-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>dme-miR-9382-3p MIMAT0035228 Drosophila melanogaster
miR-9382-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 3 ccccgg 8
>eca-miR-744 MIMAT0034644 Equus caballus miR-744
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 8 gccccg 3
>pxy-miR-8532-5p MIMAT0033777 Plutella xylostella miR-8532-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>ssa-miR-128-3-5p MIMAT0032316 Salmo salar miR-128-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>ssa-miR-128-2-5p MIMAT0032315 Salmo salar miR-128-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>ssa-miR-128-1-5p MIMAT0032313 Salmo salar miR-128-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>prd-miR-7927b-5p MIMAT0030644 Panagrellus redivivus
miR-7927b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>prd-miR-7927d-5p MIMAT0030612 Panagrellus redivivus
miR-7927d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>prd-miR-7927c-5p MIMAT0030610 Panagrellus redivivus
miR-7927c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>prd-miR-7927a-5p MIMAT0030546 Panagrellus redivivus
miR-7927a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>mdo-miR-7346-5p MIMAT0028704 Monodelphis domestica miR-7346-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>mdo-miR-128b-5p MIMAT0028608 Monodelphis domestica miR-128b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>mdo-miR-7277-3p MIMAT0028529 Monodelphis domestica miR-7277-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>mmu-miR-7048-5p MIMAT0028000 Mus musculus miR-7048-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>mmu-miR-7003-3p MIMAT0027911 Mus musculus miR-7003-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 1 ccccgg 6
>hsa-miR-6845-5p MIMAT0027590 Homo sapiens miR-6845-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>hsa-miR-6840-5p MIMAT0027582 Homo sapiens miR-6840-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 3 ccccgg 8
>hsa-miR-6763-3p MIMAT0027427 Homo sapiens miR-6763-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 3 ccccgg 8
>hsa-miR-6762-5p MIMAT0027424 Homo sapiens miR-6762-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>hsa-miR-6727-5p MIMAT0027355 Homo sapiens miR-6727-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 8 gccccg 3
>prv-miR-LLT7 MIMAT0025310 Pseudorabies virus miR-LLT7
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgg 7
||||||
Sbjct: 6 ccccgg 1
>cgr-miR-744-5p MIMAT0024002 Cricetulus griseus miR-744-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 8 gccccg 3
>cgr-miR-486-3p MIMAT0023968 Cricetulus griseus miR-486-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>cgr-miR-128-5p MIMAT0023749 Cricetulus griseus miR-128-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>aca-miR-146a-3p MIMAT0021776 Anolis carolinensis miR-146a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gccccg 6
||||||
Sbjct: 1 gccccg 6
>bfl-miR-4903 MIMAT0020498 Branchiostoma floridae miR-4903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 3 ccccgg 8
>bfl-miR-4872b MIMAT0020115 Branchiostoma floridae miR-4872b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgg 7
||||||
Sbjct: 8 ccccgg 3
>hsa-miR-4783-3p MIMAT0019947 Homo sapiens miR-4783-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 1 ccccgg 6
>hsa-miR-4655-5p MIMAT0019721 Homo sapiens miR-4655-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgg 7
||||||
Sbjct: 8 ccccgg 3
>pma-miR-4544-3p MIMAT0019574 Petromyzon marinus miR-4544-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgg 7
||||||
Sbjct: 7 ccccgg 2
>hsa-miR-4532 MIMAT0019071 Homo sapiens miR-4532
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 1 ccccgg 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgg 7
||||||
Sbjct: 8 ccccgg 3
>cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgg 7
||||||
Sbjct: 8 ccccgg 3
>ppy-miR-744 MIMAT0016102 Pongo pygmaeus miR-744
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 8 gccccg 3
>ssc-miR-744 MIMAT0015708 Sus scrofa miR-744
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 8 gccccg 3
>hsa-miR-3196 MIMAT0015080 Homo sapiens miR-3196
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>mmu-miR-486b-3p MIMAT0014944 Mus musculus miR-486b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>tgu-miR-2992 MIMAT0014549 Taeniopygia guttata miR-2992
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 1 ccccgg 6
>tgu-miR-128-1-5p MIMAT0031084 Taeniopygia guttata miR-128-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>bta-miR-2889 MIMAT0013847 Bos taurus miR-2889
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 3 ccccgg 8
>eca-miR-486-3p MIMAT0013187 Equus caballus miR-486-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 3 ccccgg 8
>hsv1-miR-H8-3p MIMAT0012598 Herpes Simplex miR-H8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 3 ccccgg 8
>bta-miR-2299-3p MIMAT0011808 Bos taurus miR-2299-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccccgg 7
||||||
Sbjct: 7 ccccgg 2
>bta-miR-744 MIMAT0009369 Bos taurus miR-744
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 8 gccccg 3
>ptr-miR-744 MIMAT0008317 Pan troglodytes miR-744
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 8 gccccg 3
>mml-miR-486-3p MIMAT0006345 Macaca mulatta miR-486-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>gga-miR-1716 MIMAT0007613 Gallus gallus miR-1716
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 8 gccccg 3
>gga-miR-1595-3p MIMAT0007459 Gallus gallus miR-1595-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gccccg 6
||||||
Sbjct: 3 gccccg 8
>hsa-miR-1247-3p MIMAT0022721 Homo sapiens miR-1247-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccccgg 7
||||||
Sbjct: 1 ccccgg 6
>hsa-miR-744-5p MIMAT0004945 Homo sapiens miR-744-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 8 gccccg 3
>mmu-miR-744-5p MIMAT0004187 Mus musculus miR-744-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 8 gccccg 3
>mmu-miR-486a-3p MIMAT0017206 Mus musculus miR-486a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>mml-miR-128a-5p MIMAT0026565 Macaca mulatta miR-128a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>hsa-miR-486-3p MIMAT0004762 Homo sapiens miR-486-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>dre-miR-128-5p MIMAT0031967 Danio rerio miR-128-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>gga-miR-128-1-5p MIMAT0031096 Gallus gallus miR-128-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>rno-miR-128-1-5p MIMAT0017118 Rattus norvegicus miR-128-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>hsa-miR-128-1-5p MIMAT0026477 Homo sapiens miR-128-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
>mmu-miR-128-1-5p MIMAT0016982 Mus musculus miR-128-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccccg 6
||||||
Sbjct: 6 gccccg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 96
Number of extensions: 85
Number of successful extensions: 76
Number of sequences better than 100.0: 75
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 76
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)