BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d8-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D8-5p MIMAT0028178 Duck enteritis miR-D8-5p 14 20
mmu-miR-6979-5p MIMAT0027860 Mus musculus miR-6979-5p 14 20
hsa-miR-6778-3p MIMAT0027457 Homo sapiens miR-6778-3p 14 20
oha-miR-31-5p MIMAT0036897 Ophiophagus hannah miR-31-5p 12 80
chi-miR-532-3p MIMAT0036271 Capra hircus miR-532-3p 12 80
chi-miR-30f-3p MIMAT0036131 Capra hircus miR-30f-3p 12 80
chi-miR-30b-3p MIMAT0036124 Capra hircus miR-30b-3p 12 80
bra-miR162-5p MIMAT0035830 Brassica rapa miR162-5p 12 80
cfa-miR-8865 MIMAT0034362 Canis familiaris miR-8865 12 80
gra-miR8771c MIMAT0034154 Gossypium raimondii miR8771c 12 80
ppc-miR-8264-3p MIMAT0033013 Pristionchus pacificus miR-8264-3p 12 80
stu-miR162b-5p MIMAT0031281 Solanum tuberosum miR162b-5p 12 80
stu-miR162a-5p MIMAT0031279 Solanum tuberosum miR162a-5p 12 80
prd-miR-7911c-5p MIMAT0030562 Panagrellus redivivus miR-7911c-5p 12 80
bta-miR-7865 MIMAT0030450 Bos taurus miR-7865 12 80
hsa-miR-1273h-5p MIMAT0030415 Homo sapiens miR-1273h-5p 12 80
osa-miR1437b-5p MIMAT0029953 Oryza sativa miR1437b-5p 12 80
mdo-miR-30b-3p MIMAT0028551 Monodelphis domestica miR-30b-3p 12 80
hsa-miR-7113-3p MIMAT0028124 Homo sapiens miR-7113-3p 12 80
hsa-miR-7106-5p MIMAT0028109 Homo sapiens miR-7106-5p 12 80
mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p 12 80
mmu-miR-7075-5p MIMAT0028056 Mus musculus miR-7075-5p 12 80
mmu-miR-7030-5p MIMAT0027964 Mus musculus miR-7030-5p 12 80
mmu-miR-7016-5p MIMAT0027936 Mus musculus miR-7016-5p 12 80
mmu-miR-6967-5p MIMAT0027836 Mus musculus miR-6967-5p 12 80
hsa-miR-6836-3p MIMAT0027575 Homo sapiens miR-6836-3p 12 80
hsa-miR-6825-5p MIMAT0027550 Homo sapiens miR-6825-5p 12 80
hsa-miR-6785-5p MIMAT0027470 Homo sapiens miR-6785-5p 12 80
hsa-miR-6780a-5p MIMAT0027460 Homo sapiens miR-6780a-5p 12 80
hsa-miR-6779-5p MIMAT0027458 Homo sapiens miR-6779-5p 12 80
hsa-miR-6749-3p MIMAT0027399 Homo sapiens miR-6749-3p 12 80
blv-miR-B4-5p MIMAT0027347 Bovine leukemia miR-B4-5p 12 80
gga-miR-6599-5p MIMAT0025836 Gallus gallus miR-6599-5p 12 80
gga-miR-6543-3p MIMAT0025827 Gallus gallus miR-6543-3p 12 80
gga-miR-6645-5p MIMAT0025742 Gallus gallus miR-6645-5p 12 80
gga-miR-6573-3p MIMAT0025654 Gallus gallus miR-6573-3p 12 80
ppe-miR482d-3p MIMAT0027315 Prunus persica miR482d-3p 12 80
bta-miR-149-3p MIMAT0024571 Bos taurus miR-149-3p 12 80
cgr-miR-532-3p MIMAT0023982 Cricetulus griseus miR-532-3p 12 80
cgr-miR-149-3p MIMAT0023781 Cricetulus griseus miR-149-3p 12 80
hsa-miR-6089 MIMAT0023714 Homo sapiens miR-6089 12 80
hco-miR-5910 MIMAT0023366 Haemonchus contortus miR-5910 12 80
hsa-miR-4756-5p MIMAT0019899 Homo sapiens miR-4756-5p 12 80
hsa-miR-4739 MIMAT0019868 Homo sapiens miR-4739 12 80
hsa-miR-4728-5p MIMAT0019849 Homo sapiens miR-4728-5p 12 80
hsa-miR-4695-5p MIMAT0019788 Homo sapiens miR-4695-5p 12 80
pma-miR-4611 MIMAT0019645 Petromyzon marinus miR-4611 12 80
hsa-miR-3689d MIMAT0019008 Homo sapiens miR-3689d 12 80
hsa-miR-3689c MIMAT0019007 Homo sapiens miR-3689c 12 80
hsa-miR-4443 MIMAT0018961 Homo sapiens miR-4443 12 80
hsa-miR-3689b-3p MIMAT0018181 Homo sapiens miR-3689b-3p 12 80
ame-miR-3739 MIMAT0018608 Apis mellifera miR-3739 12 80
hsa-miR-3689a-3p MIMAT0018118 Homo sapiens miR-3689a-3p 12 80
rno-miR-3593-5p MIMAT0017896 Rattus norvegicus miR-3593-5p 12 80
rno-miR-3584-5p MIMAT0017875 Rattus norvegicus miR-3584-5p 12 80
rno-miR-3541 MIMAT0017795 Rattus norvegicus miR-3541 12 80
gga-miR-3532-3p MIMAT0016383 Gallus gallus miR-3532-3p 12 80
ppy-miR-1281 MIMAT0016202 Pongo pygmaeus miR-1281 12 80
ppy-miR-532-3p MIMAT0015988 Pongo pygmaeus miR-532-3p 12 80
aly-miR162b-5p MIMAT0017447 Arabidopsis lyrata miR162b-5p 12 80
aly-miR162a-5p MIMAT0017445 Arabidopsis lyrata miR162a-5p 12 80
hsa-miR-3197 MIMAT0015082 Homo sapiens miR-3197 12 80
ssc-miR-532-3p MIMAT0013941 Sus scrofa miR-532-3p 12 80
eca-miR-532-3p MIMAT0013236 Equus caballus miR-532-3p 12 80
rno-miR-764-3p MIMAT0017370 Rattus norvegicus miR-764-3p 12 80
hsa-miR-2116-3p MIMAT0011161 Homo sapiens miR-2116-3p 12 80
gma-miR2109-3p MIMAT0032101 Glycine max miR2109-3p 12 80
bta-miR-1281 MIMAT0009962 Bos taurus miR-1281 12 80
mmu-miR-1982-5p MIMAT0009459 Mus musculus miR-1982-5p 12 80
mmu-miR-1943-5p MIMAT0009408 Mus musculus miR-1943-5p 12 80
ptr-miR-532 MIMAT0008213 Pan troglodytes miR-532 12 80
ptr-miR-1281 MIMAT0008000 Pan troglodytes miR-1281 12 80
ssc-miR-30b-3p MIMAT0015269 Sus scrofa miR-30b-3p 12 80
mml-miR-532-3p MIMAT0006404 Macaca mulatta miR-532-3p 12 80
mml-miR-149-3p MIMAT0026827 Macaca mulatta miR-149-3p 12 80
gga-miR-1759-3p MIMAT0026783 Gallus gallus miR-1759-3p 12 80
gga-miR-1614-3p MIMAT0007481 Gallus gallus miR-1614-3p 12 80
oan-miR-1408 MIMAT0007225 Ornithorhynchus anatinus miR-1408 12 80
oan-miR-30b-3p MIMAT0007044 Ornithorhynchus anatinus miR-30b-3p 12 80
hsa-miR-1321 MIMAT0005952 Homo sapiens miR-1321 12 80
hsa-miR-1281 MIMAT0005939 Homo sapiens miR-1281 12 80
rno-miR-532-3p MIMAT0005323 Rattus norvegicus miR-532-3p 12 80
rrv-miR-rR1-4-5p MIMAT0004410 Rhesus monkey miR-rR1-4-5p 12 80
mdo-miR-31-5p MIMAT0004094 Monodelphis domestica miR-31-5p 12 80
bta-miR-30b-3p MIMAT0012534 Bos taurus miR-30b-3p 12 80
mmu-miR-709 MIMAT0003499 Mus musculus miR-709 12 80
dre-miR-139-3p MIMAT0032008 Danio rerio miR-139-3p 12 80
mmu-miR-532-3p MIMAT0004781 Mus musculus miR-532-3p 12 80
hsa-miR-532-3p MIMAT0004780 Homo sapiens miR-532-3p 12 80
mml-miR-30b-3p MIMAT0026563 Macaca mulatta miR-30b-3p 12 80
hsa-miR-30b-3p MIMAT0004589 Homo sapiens miR-30b-3p 12 80
mmu-miR-149-3p MIMAT0016990 Mus musculus miR-149-3p 12 80
>dev-miR-D8-5p MIMAT0028178 Duck enteritis miR-D8-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcctccc 7
|||||||
Sbjct: 2 gcctccc 8
>mmu-miR-6979-5p MIMAT0027860 Mus musculus miR-6979-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcctccc 7
|||||||
Sbjct: 8 gcctccc 2
>hsa-miR-6778-3p MIMAT0027457 Homo sapiens miR-6778-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcctccc 7
|||||||
Sbjct: 2 gcctccc 8
>oha-miR-31-5p MIMAT0036897 Ophiophagus hannah miR-31-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>chi-miR-532-3p MIMAT0036271 Capra hircus miR-532-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>chi-miR-30f-3p MIMAT0036131 Capra hircus miR-30f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>chi-miR-30b-3p MIMAT0036124 Capra hircus miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>bra-miR162-5p MIMAT0035830 Brassica rapa miR162-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>cfa-miR-8865 MIMAT0034362 Canis familiaris miR-8865
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>gra-miR8771c MIMAT0034154 Gossypium raimondii miR8771c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>ppc-miR-8264-3p MIMAT0033013 Pristionchus pacificus miR-8264-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 6 cctccc 1
>stu-miR162b-5p MIMAT0031281 Solanum tuberosum miR162b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>stu-miR162a-5p MIMAT0031279 Solanum tuberosum miR162a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>prd-miR-7911c-5p MIMAT0030562 Panagrellus redivivus
miR-7911c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 3 cctccc 8
>bta-miR-7865 MIMAT0030450 Bos taurus miR-7865
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-1273h-5p MIMAT0030415 Homo sapiens miR-1273h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>osa-miR1437b-5p MIMAT0029953 Oryza sativa miR1437b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 6 cctccc 1
>mdo-miR-30b-3p MIMAT0028551 Monodelphis domestica miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-7113-3p MIMAT0028124 Homo sapiens miR-7113-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>hsa-miR-7106-5p MIMAT0028109 Homo sapiens miR-7106-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 7 cctccc 2
>mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>mmu-miR-7075-5p MIMAT0028056 Mus musculus miR-7075-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>mmu-miR-7030-5p MIMAT0027964 Mus musculus miR-7030-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>mmu-miR-7016-5p MIMAT0027936 Mus musculus miR-7016-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>mmu-miR-6967-5p MIMAT0027836 Mus musculus miR-6967-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-6836-3p MIMAT0027575 Homo sapiens miR-6836-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctcc 6
||||||
Sbjct: 3 gcctcc 8
>hsa-miR-6825-5p MIMAT0027550 Homo sapiens miR-6825-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-6785-5p MIMAT0027470 Homo sapiens miR-6785-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 7 cctccc 2
>hsa-miR-6780a-5p MIMAT0027460 Homo sapiens miR-6780a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-6779-5p MIMAT0027458 Homo sapiens miR-6779-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-6749-3p MIMAT0027399 Homo sapiens miR-6749-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 3 cctccc 8
>blv-miR-B4-5p MIMAT0027347 Bovine leukemia miR-B4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>gga-miR-6599-5p MIMAT0025836 Gallus gallus miR-6599-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>gga-miR-6543-3p MIMAT0025827 Gallus gallus miR-6543-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctcc 6
||||||
Sbjct: 1 gcctcc 6
>gga-miR-6645-5p MIMAT0025742 Gallus gallus miR-6645-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 7 cctccc 2
>gga-miR-6573-3p MIMAT0025654 Gallus gallus miR-6573-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>ppe-miR482d-3p MIMAT0027315 Prunus persica miR482d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>bta-miR-149-3p MIMAT0024571 Bos taurus miR-149-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>cgr-miR-532-3p MIMAT0023982 Cricetulus griseus miR-532-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>cgr-miR-149-3p MIMAT0023781 Cricetulus griseus miR-149-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-6089 MIMAT0023714 Homo sapiens miR-6089
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>hco-miR-5910 MIMAT0023366 Haemonchus contortus miR-5910
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>hsa-miR-4756-5p MIMAT0019899 Homo sapiens miR-4756-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-4739 MIMAT0019868 Homo sapiens miR-4739
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-4728-5p MIMAT0019849 Homo sapiens miR-4728-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 7 cctccc 2
>hsa-miR-4695-5p MIMAT0019788 Homo sapiens miR-4695-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 8 gcctcc 3
>pma-miR-4611 MIMAT0019645 Petromyzon marinus miR-4611
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 6 cctccc 1
>hsa-miR-3689d MIMAT0019008 Homo sapiens miR-3689d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 6 cctccc 1
>hsa-miR-3689c MIMAT0019007 Homo sapiens miR-3689c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-4443 MIMAT0018961 Homo sapiens miR-4443
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 8 gcctcc 3
>hsa-miR-3689b-3p MIMAT0018181 Homo sapiens miR-3689b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>ame-miR-3739 MIMAT0018608 Apis mellifera miR-3739
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-3689a-3p MIMAT0018118 Homo sapiens miR-3689a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>rno-miR-3593-5p MIMAT0017896 Rattus norvegicus miR-3593-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctcc 6
||||||
Sbjct: 3 gcctcc 8
>rno-miR-3584-5p MIMAT0017875 Rattus norvegicus miR-3584-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 6 cctccc 1
>rno-miR-3541 MIMAT0017795 Rattus norvegicus miR-3541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 3 cctccc 8
>gga-miR-3532-3p MIMAT0016383 Gallus gallus miR-3532-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 8 gcctcc 3
>ppy-miR-1281 MIMAT0016202 Pongo pygmaeus miR-1281
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctcc 6
||||||
Sbjct: 3 gcctcc 8
>ppy-miR-532-3p MIMAT0015988 Pongo pygmaeus miR-532-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>aly-miR162b-5p MIMAT0017447 Arabidopsis lyrata miR162b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>aly-miR162a-5p MIMAT0017445 Arabidopsis lyrata miR162a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>hsa-miR-3197 MIMAT0015082 Homo sapiens miR-3197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>ssc-miR-532-3p MIMAT0013941 Sus scrofa miR-532-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>eca-miR-532-3p MIMAT0013236 Equus caballus miR-532-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>rno-miR-764-3p MIMAT0017370 Rattus norvegicus miR-764-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 8 gcctcc 3
>hsa-miR-2116-3p MIMAT0011161 Homo sapiens miR-2116-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>gma-miR2109-3p MIMAT0032101 Glycine max miR2109-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>bta-miR-1281 MIMAT0009962 Bos taurus miR-1281
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctcc 6
||||||
Sbjct: 3 gcctcc 8
>mmu-miR-1982-5p MIMAT0009459 Mus musculus miR-1982-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>mmu-miR-1943-5p MIMAT0009408 Mus musculus miR-1943-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>ptr-miR-532 MIMAT0008213 Pan troglodytes miR-532
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>ptr-miR-1281 MIMAT0008000 Pan troglodytes miR-1281
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctcc 6
||||||
Sbjct: 3 gcctcc 8
>ssc-miR-30b-3p MIMAT0015269 Sus scrofa miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>mml-miR-532-3p MIMAT0006404 Macaca mulatta miR-532-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>mml-miR-149-3p MIMAT0026827 Macaca mulatta miR-149-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>gga-miR-1759-3p MIMAT0026783 Gallus gallus miR-1759-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctcc 6
||||||
Sbjct: 1 gcctcc 6
>gga-miR-1614-3p MIMAT0007481 Gallus gallus miR-1614-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>oan-miR-1408 MIMAT0007225 Ornithorhynchus anatinus miR-1408
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>oan-miR-30b-3p MIMAT0007044 Ornithorhynchus anatinus miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-1321 MIMAT0005952 Homo sapiens miR-1321
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-1281 MIMAT0005939 Homo sapiens miR-1281
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctcc 6
||||||
Sbjct: 3 gcctcc 8
>rno-miR-532-3p MIMAT0005323 Rattus norvegicus miR-532-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>rrv-miR-rR1-4-5p MIMAT0004410 Rhesus monkey miR-rR1-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>mdo-miR-31-5p MIMAT0004094 Monodelphis domestica miR-31-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>bta-miR-30b-3p MIMAT0012534 Bos taurus miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>mmu-miR-709 MIMAT0003499 Mus musculus miR-709
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctcc 6
||||||
Sbjct: 6 gcctcc 1
>dre-miR-139-3p MIMAT0032008 Danio rerio miR-139-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>mmu-miR-532-3p MIMAT0004781 Mus musculus miR-532-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>hsa-miR-532-3p MIMAT0004780 Homo sapiens miR-532-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctccc 7
||||||
Sbjct: 1 cctccc 6
>mml-miR-30b-3p MIMAT0026563 Macaca mulatta miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>hsa-miR-30b-3p MIMAT0004589 Homo sapiens miR-30b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
>mmu-miR-149-3p MIMAT0016990 Mus musculus miR-149-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctccc 7
||||||
Sbjct: 8 cctccc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 132
Number of extensions: 129
Number of successful extensions: 92
Number of sequences better than 100.0: 92
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 92
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
