BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hsv1-miR-56054b
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mmu-miR-7689-5p MIMAT0029908 Mus musculus miR-7689-5p                  14      20
mtr-miR2111g-3p MIMAT0013288 Medicago truncatula miR2111g-3p           14      20
mmu-miR-1188-3p MIMAT0017328 Mus musculus miR-1188-3p                  14      20
eca-miR-9080 MIMAT0034625 Equus caballus miR-9080                      12      80
eca-miR-9078 MIMAT0034623 Equus caballus miR-9078                      12      80
ppc-miR-8364l-5p MIMAT0033264 Pristionchus pacificus miR-8364l-5p      12      80
ppc-miR-8319-5p MIMAT0033178 Pristionchus pacificus miR-8319-5p        12      80
ppc-miR-8301-5p MIMAT0033121 Pristionchus pacificus miR-8301-5p        12      80
aly-miR2111c-3p MIMAT0031385 Arabidopsis lyrata miR2111c-3p            12      80
hsa-miR-8088 MIMAT0031015 Homo sapiens miR-8088                        12      80
bdi-miR7766-3p MIMAT0030281 Brachypodium distachyon miR7766-3p         12      80
cca-miR6118-3p MIMAT0024566 Cynara cardunculus miR6118-3p              12      80
mml-miR-1304 MIMAT0024339 Macaca mulatta miR-1304                      12      80
dme-miR-4972-5p MIMAT0020199 Drosophila melanogaster miR-4972-5p       12      80
tca-miR-3826-5p MIMAT0018680 Tribolium castaneum miR-3826-5p           12      80
ame-miR-3800 MIMAT0018587 Apis mellifera miR-3800                      12      80
ame-miR-3747a MIMAT0018515 Apis mellifera miR-3747a                    12      80
rno-miR-1188-3p MIMAT0017855 Rattus norvegicus miR-1188-3p             12      80
bra-miR2111b-3p MIMAT0016371 Brassica rapa miR2111b-3p                 12      80
bra-miR2111a-3p MIMAT0016369 Brassica rapa miR2111a-3p                 12      80
ppy-miR-1304 MIMAT0016224 Pongo pygmaeus miR-1304                      12      80
aly-miR2111b-3p MIMAT0017660 Arabidopsis lyrata miR2111b-3p            12      80
aly-miR2111a-3p MIMAT0017658 Arabidopsis lyrata miR2111a-3p            12      80
bmo-miR-3209 MIMAT0015388 Bombyx mori miR-3209                         12      80
bmo-miR-2760-5p MIMAT0013632 Bombyx mori miR-2760-5p                   12      80
bmo-miR-2756-3p MIMAT0013624 Bombyx mori miR-2756-3p                   12      80
mtr-miR2675 MIMAT0013496 Medicago truncatula miR2675                   12      80
mtr-miR2111m-3p MIMAT0026928 Medicago truncatula miR2111m-3p           12      80
bna-miR2111a-3p MIMAT0011783 Brassica napus miR2111a-3p                12      80
bna-miR2111b-3p MIMAT0011781 Brassica napus miR2111b-3p                12      80
ath-miR2111b-3p MIMAT0011153 Arabidopsis thaliana miR2111b-3p          12      80
ath-miR2111a-3p MIMAT0011151 Arabidopsis thaliana miR2111a-3p          12      80
osa-miR2106 MIMAT0010074 Oryza sativa miR2106                          12      80
cel-miR-1833 MIMAT0006775 Caenorhabditis elegans miR-1833              12      80
mml-miR-33b-3p MIMAT0026808 Macaca mulatta miR-33b-3p                  12      80
gga-miR-1698 MIMAT0007590 Gallus gallus miR-1698                       12      80
oan-miR-1389-5p MIMAT0026758 Ornithorhynchus anatinus miR-1389-5p      12      80
oan-miR-1370 MIMAT0007035 Ornithorhynchus anatinus miR-1370            12      80
mdv2-miR-M19-5p MIMAT0012541 Mareks disease miR-M19-5p                 12      80
mmu-miR-681 MIMAT0003458 Mus musculus miR-681                          12      80
ath-miR402 MIMAT0001003 Arabidopsis thaliana miR402                    12      80
>mmu-miR-7689-5p MIMAT0029908 Mus musculus miR-7689-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcctcgg 7
         |||||||
Sbjct: 7 gcctcgg 1
>mtr-miR2111g-3p MIMAT0013288 Medicago truncatula miR2111g-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcctcgg 7
         |||||||
Sbjct: 2 gcctcgg 8
>mmu-miR-1188-3p MIMAT0017328 Mus musculus miR-1188-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcctcgg 7
         |||||||
Sbjct: 8 gcctcgg 2
>eca-miR-9080 MIMAT0034625 Equus caballus miR-9080
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 8 cctcgg 3
>eca-miR-9078 MIMAT0034623 Equus caballus miR-9078
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 8 gcctcg 3
>ppc-miR-8364l-5p MIMAT0033264 Pristionchus pacificus
         miR-8364l-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 1 cctcgg 6
>ppc-miR-8319-5p MIMAT0033178 Pristionchus pacificus miR-8319-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 6 gcctcg 1
>ppc-miR-8301-5p MIMAT0033121 Pristionchus pacificus miR-8301-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 8 cctcgg 3
>aly-miR2111c-3p MIMAT0031385 Arabidopsis lyrata miR2111c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>hsa-miR-8088 MIMAT0031015 Homo sapiens miR-8088
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 1 cctcgg 6
>bdi-miR7766-3p MIMAT0030281 Brachypodium distachyon miR7766-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 6 gcctcg 1
>cca-miR6118-3p MIMAT0024566 Cynara cardunculus miR6118-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 8 cctcgg 3
>mml-miR-1304 MIMAT0024339 Macaca mulatta miR-1304
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 8 gcctcg 3
>dme-miR-4972-5p MIMAT0020199 Drosophila melanogaster
         miR-4972-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 1 cctcgg 6
>tca-miR-3826-5p MIMAT0018680 Tribolium castaneum miR-3826-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 6 gcctcg 1
>ame-miR-3800 MIMAT0018587 Apis mellifera miR-3800
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 6 gcctcg 1
>ame-miR-3747a MIMAT0018515 Apis mellifera miR-3747a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 6 gcctcg 1
>rno-miR-1188-3p MIMAT0017855 Rattus norvegicus miR-1188-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 6 gcctcg 1
>bra-miR2111b-3p MIMAT0016371 Brassica rapa miR2111b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>bra-miR2111a-3p MIMAT0016369 Brassica rapa miR2111a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>ppy-miR-1304 MIMAT0016224 Pongo pygmaeus miR-1304
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 8 gcctcg 3
>aly-miR2111b-3p MIMAT0017660 Arabidopsis lyrata miR2111b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>aly-miR2111a-3p MIMAT0017658 Arabidopsis lyrata miR2111a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>bmo-miR-3209 MIMAT0015388 Bombyx mori miR-3209
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 6 gcctcg 1
>bmo-miR-2760-5p MIMAT0013632 Bombyx mori miR-2760-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 6 gcctcg 1
>bmo-miR-2756-3p MIMAT0013624 Bombyx mori miR-2756-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>mtr-miR2675 MIMAT0013496 Medicago truncatula miR2675
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 6 gcctcg 1
>mtr-miR2111m-3p MIMAT0026928 Medicago truncatula miR2111m-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>bna-miR2111a-3p MIMAT0011783 Brassica napus miR2111a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>bna-miR2111b-3p MIMAT0011781 Brassica napus miR2111b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>ath-miR2111b-3p MIMAT0011153 Arabidopsis thaliana miR2111b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>ath-miR2111a-3p MIMAT0011151 Arabidopsis thaliana miR2111a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>osa-miR2106 MIMAT0010074 Oryza sativa miR2106
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 6 cctcgg 1
>cel-miR-1833 MIMAT0006775 Caenorhabditis elegans miR-1833
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 6 gcctcg 1
>mml-miR-33b-3p MIMAT0026808 Macaca mulatta miR-33b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 3 gcctcg 8
>gga-miR-1698 MIMAT0007590 Gallus gallus miR-1698
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 6 gcctcg 1
>oan-miR-1389-5p MIMAT0026758 Ornithorhynchus anatinus
         miR-1389-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 1 cctcgg 6
>oan-miR-1370 MIMAT0007035 Ornithorhynchus anatinus miR-1370
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 8 cctcgg 3
>mdv2-miR-M19-5p MIMAT0012541 Mareks disease miR-M19-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cctcgg 7
         ||||||
Sbjct: 3 cctcgg 8
>mmu-miR-681 MIMAT0003458 Mus musculus miR-681
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 3 gcctcg 8
>ath-miR402 MIMAT0001003 Arabidopsis thaliana miR402
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcctcg 6
         ||||||
Sbjct: 8 gcctcg 3
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 56
Number of extensions: 53
Number of successful extensions: 41
Number of sequences better than 100.0: 41
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 41
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)