BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-10-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-4763-5p MIMAT0019912 Homo sapiens miR-4763-5p 14 20
zma-miR169q-3p MIMAT0015328 Zea mays miR169q-3p 14 20
zma-miR169n-3p MIMAT0015325 Zea mays miR169n-3p 14 20
efu-miR-370 MIMAT0034931 Eptesicus fuscus miR-370 12 80
eca-miR-8908l MIMAT0034712 Equus caballus miR-8908l 12 80
cel-miR-8191-5p MIMAT0032795 Caenorhabditis elegans miR-8191-5p 12 80
ssa-miR-456-5p MIMAT0032645 Salmo salar miR-456-5p 12 80
sly-miR168a-3p MIMAT0031130 Solanum lycopersicum miR168a-3p 12 80
oan-miR-7413-3p MIMAT0028975 Ornithorhynchus anatinus miR-7413-3p 12 80
mdo-miR-7342-5p MIMAT0028694 Monodelphis domestica miR-7342-5p 12 80
hsa-miR-7150 MIMAT0028211 Homo sapiens miR-7150 12 80
mmu-miR-7069-3p MIMAT0028045 Mus musculus miR-7069-3p 12 80
hsa-miR-6894-3p MIMAT0027689 Homo sapiens miR-6894-3p 12 80
hsa-miR-6893-5p MIMAT0027686 Homo sapiens miR-6893-5p 12 80
hsa-miR-6811-5p MIMAT0027522 Homo sapiens miR-6811-5p 12 80
hsa-miR-6808-5p MIMAT0027516 Homo sapiens miR-6808-5p 12 80
hsa-miR-6752-3p MIMAT0027405 Homo sapiens miR-6752-3p 12 80
hsa-miR-6721-5p MIMAT0025852 Homo sapiens miR-6721-5p 12 80
hsa-miR-6511b-5p MIMAT0025847 Homo sapiens miR-6511b-5p 12 80
gga-miR-6566-3p MIMAT0025638 Gallus gallus miR-6566-3p 12 80
ssc-miR-370 MIMAT0025373 Sus scrofa miR-370 12 80
rno-miR-6328 MIMAT0025067 Rattus norvegicus miR-6328 12 80
ppy-miR-1976 MIMAT0024404 Pongo pygmaeus miR-1976 12 80
ppy-miR-1273e MIMAT0024385 Pongo pygmaeus miR-1273e 12 80
mml-miR-1271-3p MIMAT0027108 Macaca mulatta miR-1271-3p 12 80
ggo-miR-940 MIMAT0024213 Gorilla gorilla miR-940 12 80
ggo-miR-370 MIMAT0024182 Gorilla gorilla miR-370 12 80
cgr-miR-1271 MIMAT0023747 Cricetulus griseus miR-1271 12 80
ath-miR5631 MIMAT0022390 Arabidopsis thaliana miR5631 12 80
bdi-miR169c-3p MIMAT0027073 Brachypodium distachyon miR169c-3p 12 80
hsa-miR-4722-5p MIMAT0019836 Homo sapiens miR-4722-5p 12 80
hsa-miR-4690-5p MIMAT0019779 Homo sapiens miR-4690-5p 12 80
oar-miR-370-3p MIMAT0019244 Ovis aries miR-370-3p 12 80
hsa-miR-4269 MIMAT0016897 Homo sapiens miR-4269 12 80
aly-miR4229 MIMAT0017917 Arabidopsis lyrata miR4229 12 80
cin-miR-4001d-3p MIMAT0016453 Ciona intestinalis miR-4001d-3p 12 80
ppy-miR-1207-5p MIMAT0016155 Pongo pygmaeus miR-1207-5p 12 80
ppy-miR-634 MIMAT0016073 Pongo pygmaeus miR-634 12 80
ppy-miR-596 MIMAT0016038 Pongo pygmaeus miR-596 12 80
ppy-miR-370 MIMAT0015857 Pongo pygmaeus miR-370 12 80
tgu-miR-456-5p MIMAT0026964 Taeniopygia guttata miR-456-5p 12 80
zma-miR169o-3p MIMAT0015326 Zea mays miR169o-3p 12 80
eca-miR-370 MIMAT0013142 Equus caballus miR-370 12 80
ptr-miR-596 MIMAT0012807 Pan troglodytes miR-596 12 80
bta-miR-2449 MIMAT0012027 Bos taurus miR-2449 12 80
bta-miR-2360 MIMAT0011898 Bos taurus miR-2360 12 80
bta-miR-2353 MIMAT0011889 Bos taurus miR-2353 12 80
sme-miR-2206-5p MIMAT0011402 Schmidtea mediterranea miR-2206-5p 12 80
cfa-miR-370 MIMAT0009889 Canis familiaris miR-370 12 80
bta-miR-370 MIMAT0009300 Bos taurus miR-370 12 80
ptr-miR-940 MIMAT0008347 Pan troglodytes miR-940 12 80
ptr-miR-657 MIMAT0008306 Pan troglodytes miR-657 12 80
ptr-miR-370 MIMAT0008120 Pan troglodytes miR-370 12 80
mml-miR-940 MIMAT0006541 Macaca mulatta miR-940 12 80
mml-miR-657 MIMAT0006498 Macaca mulatta miR-657 12 80
mml-miR-370-3p MIMAT0006295 Macaca mulatta miR-370-3p 12 80
gga-miR-1762 MIMAT0007669 Gallus gallus miR-1762 12 80
gga-miR-1623 MIMAT0007491 Gallus gallus miR-1623 12 80
oan-miR-155-3p MIMAT0006989 Ornithorhynchus anatinus miR-155-3p 12 80
hsa-miR-1207-5p MIMAT0005871 Homo sapiens miR-1207-5p 12 80
hsa-miR-940 MIMAT0004983 Homo sapiens miR-940 12 80
mtr-miR169e-3p MIMAT0022934 Medicago truncatula miR169e-3p 12 80
mtr-miR169d-3p MIMAT0022933 Medicago truncatula miR169d-3p 12 80
cbr-miR-789 MIMAT0004291 Caenorhabditis briggsae miR-789 12 80
cel-miR-789-3p MIMAT0004224 Caenorhabditis elegans miR-789-3p 12 80
ebv-miR-BART20-5p MIMAT0003719 Epstein Barr miR-BART20-5p 12 80
mmu-miR-688 MIMAT0003467 Mus musculus miR-688 12 80
rlcv-miR-rL1-16-5p MIMAT0003447 Rhesus lymphocryptovirus miR-rL1... 12 80
hsa-miR-657 MIMAT0003335 Homo sapiens miR-657 12 80
hsa-miR-596 MIMAT0003264 Homo sapiens miR-596 12 80
rno-miR-370-3p MIMAT0003122 Rattus norvegicus miR-370-3p 12 80
mml-miR-15a-3p MIMAT0026593 Macaca mulatta miR-15a-3p 12 80
ptc-miR169b-3p MIMAT0022898 Populus trichocarpa miR169b-3p 12 80
mmu-miR-370-3p MIMAT0001095 Mus musculus miR-370-3p 12 80
hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p 12 80
>hsa-miR-4763-5p MIMAT0019912 Homo sapiens miR-4763-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcctgcc 7
|||||||
Sbjct: 2 gcctgcc 8
>zma-miR169q-3p MIMAT0015328 Zea mays miR169q-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcctgcc 7
|||||||
Sbjct: 7 gcctgcc 1
>zma-miR169n-3p MIMAT0015325 Zea mays miR169n-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcctgcc 7
|||||||
Sbjct: 7 gcctgcc 1
>efu-miR-370 MIMAT0034931 Eptesicus fuscus miR-370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>eca-miR-8908l MIMAT0034712 Equus caballus miR-8908l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcc 7
||||||
Sbjct: 1 cctgcc 6
>cel-miR-8191-5p MIMAT0032795 Caenorhabditis elegans miR-8191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcc 7
||||||
Sbjct: 3 cctgcc 8
>ssa-miR-456-5p MIMAT0032645 Salmo salar miR-456-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 6 gcctgc 1
>sly-miR168a-3p MIMAT0031130 Solanum lycopersicum miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcc 7
||||||
Sbjct: 1 cctgcc 6
>oan-miR-7413-3p MIMAT0028975 Ornithorhynchus anatinus
miR-7413-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 6 cctgcc 1
>mdo-miR-7342-5p MIMAT0028694 Monodelphis domestica miR-7342-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcc 7
||||||
Sbjct: 1 cctgcc 6
>hsa-miR-7150 MIMAT0028211 Homo sapiens miR-7150
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>mmu-miR-7069-3p MIMAT0028045 Mus musculus miR-7069-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcc 7
||||||
Sbjct: 1 cctgcc 6
>hsa-miR-6894-3p MIMAT0027689 Homo sapiens miR-6894-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 3 gcctgc 8
>hsa-miR-6893-5p MIMAT0027686 Homo sapiens miR-6893-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>hsa-miR-6811-5p MIMAT0027522 Homo sapiens miR-6811-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 8 gcctgc 3
>hsa-miR-6808-5p MIMAT0027516 Homo sapiens miR-6808-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>hsa-miR-6752-3p MIMAT0027405 Homo sapiens miR-6752-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcc 7
||||||
Sbjct: 3 cctgcc 8
>hsa-miR-6721-5p MIMAT0025852 Homo sapiens miR-6721-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>hsa-miR-6511b-5p MIMAT0025847 Homo sapiens miR-6511b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 8 gcctgc 3
>gga-miR-6566-3p MIMAT0025638 Gallus gallus miR-6566-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 8 gcctgc 3
>ssc-miR-370 MIMAT0025373 Sus scrofa miR-370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>rno-miR-6328 MIMAT0025067 Rattus norvegicus miR-6328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 3 gcctgc 8
>ppy-miR-1976 MIMAT0024404 Pongo pygmaeus miR-1976
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcc 7
||||||
Sbjct: 3 cctgcc 8
>ppy-miR-1273e MIMAT0024385 Pongo pygmaeus miR-1273e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>mml-miR-1271-3p MIMAT0027108 Macaca mulatta miR-1271-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 3 gcctgc 8
>ggo-miR-940 MIMAT0024213 Gorilla gorilla miR-940
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>ggo-miR-370 MIMAT0024182 Gorilla gorilla miR-370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>cgr-miR-1271 MIMAT0023747 Cricetulus griseus miR-1271
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 3 gcctgc 8
>ath-miR5631 MIMAT0022390 Arabidopsis thaliana miR5631
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 7 cctgcc 2
>bdi-miR169c-3p MIMAT0027073 Brachypodium distachyon miR169c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 6 cctgcc 1
>hsa-miR-4722-5p MIMAT0019836 Homo sapiens miR-4722-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 6 cctgcc 1
>hsa-miR-4690-5p MIMAT0019779 Homo sapiens miR-4690-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 8 gcctgc 3
>oar-miR-370-3p MIMAT0019244 Ovis aries miR-370-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>hsa-miR-4269 MIMAT0016897 Homo sapiens miR-4269
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 6 gcctgc 1
>aly-miR4229 MIMAT0017917 Arabidopsis lyrata miR4229
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>cin-miR-4001d-3p MIMAT0016453 Ciona intestinalis miR-4001d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>ppy-miR-1207-5p MIMAT0016155 Pongo pygmaeus miR-1207-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 7 cctgcc 2
>ppy-miR-634 MIMAT0016073 Pongo pygmaeus miR-634
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcc 7
||||||
Sbjct: 3 cctgcc 8
>ppy-miR-596 MIMAT0016038 Pongo pygmaeus miR-596
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 3 gcctgc 8
>ppy-miR-370 MIMAT0015857 Pongo pygmaeus miR-370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>tgu-miR-456-5p MIMAT0026964 Taeniopygia guttata miR-456-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 6 gcctgc 1
>zma-miR169o-3p MIMAT0015326 Zea mays miR169o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 6 cctgcc 1
>eca-miR-370 MIMAT0013142 Equus caballus miR-370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>ptr-miR-596 MIMAT0012807 Pan troglodytes miR-596
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 3 gcctgc 8
>bta-miR-2449 MIMAT0012027 Bos taurus miR-2449
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>bta-miR-2360 MIMAT0011898 Bos taurus miR-2360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>bta-miR-2353 MIMAT0011889 Bos taurus miR-2353
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 3 gcctgc 8
>sme-miR-2206-5p MIMAT0011402 Schmidtea mediterranea miR-2206-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>cfa-miR-370 MIMAT0009889 Canis familiaris miR-370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>bta-miR-370 MIMAT0009300 Bos taurus miR-370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>ptr-miR-940 MIMAT0008347 Pan troglodytes miR-940
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>ptr-miR-657 MIMAT0008306 Pan troglodytes miR-657
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 6 cctgcc 1
>ptr-miR-370 MIMAT0008120 Pan troglodytes miR-370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>mml-miR-940 MIMAT0006541 Macaca mulatta miR-940
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>mml-miR-657 MIMAT0006498 Macaca mulatta miR-657
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 6 cctgcc 1
>mml-miR-370-3p MIMAT0006295 Macaca mulatta miR-370-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>gga-miR-1762 MIMAT0007669 Gallus gallus miR-1762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 6 cctgcc 1
>gga-miR-1623 MIMAT0007491 Gallus gallus miR-1623
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 6 gcctgc 1
>oan-miR-155-3p MIMAT0006989 Ornithorhynchus anatinus miR-155-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcc 7
||||||
Sbjct: 3 cctgcc 8
>hsa-miR-1207-5p MIMAT0005871 Homo sapiens miR-1207-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 7 cctgcc 2
>hsa-miR-940 MIMAT0004983 Homo sapiens miR-940
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 8 cctgcc 3
>mtr-miR169e-3p MIMAT0022934 Medicago truncatula miR169e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 6 cctgcc 1
>mtr-miR169d-3p MIMAT0022933 Medicago truncatula miR169d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 6 cctgcc 1
>cbr-miR-789 MIMAT0004291 Caenorhabditis briggsae miR-789
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcc 7
||||||
Sbjct: 3 cctgcc 8
>cel-miR-789-3p MIMAT0004224 Caenorhabditis elegans miR-789-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgcc 7
||||||
Sbjct: 3 cctgcc 8
>ebv-miR-BART20-5p MIMAT0003719 Epstein Barr miR-BART20-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 8 gcctgc 3
>mmu-miR-688 MIMAT0003467 Mus musculus miR-688
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 8 gcctgc 3
>rlcv-miR-rL1-16-5p MIMAT0003447 Rhesus lymphocryptovirus
miR-rL1-16-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 8 gcctgc 3
>hsa-miR-657 MIMAT0003335 Homo sapiens miR-657
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 6 cctgcc 1
>hsa-miR-596 MIMAT0003264 Homo sapiens miR-596
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 3 gcctgc 8
>rno-miR-370-3p MIMAT0003122 Rattus norvegicus miR-370-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>mml-miR-15a-3p MIMAT0026593 Macaca mulatta miR-15a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcctgc 6
||||||
Sbjct: 6 gcctgc 1
>ptc-miR169b-3p MIMAT0022898 Populus trichocarpa miR169b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgcc 7
||||||
Sbjct: 6 cctgcc 1
>mmu-miR-370-3p MIMAT0001095 Mus musculus miR-370-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
>hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcctgc 6
||||||
Sbjct: 1 gcctgc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 95
Number of extensions: 92
Number of successful extensions: 75
Number of sequences better than 100.0: 75
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 75
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
