BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m95-1-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ame-miR-9881 MIMAT0037285 Apis mellifera miR-9881 14 20
ppc-miR-8316-5p MIMAT0033169 Pristionchus pacificus miR-8316-5p 14 20
pma-miR-4600 MIMAT0019634 Petromyzon marinus miR-4600 14 20
bmo-miR-3284 MIMAT0015470 Bombyx mori miR-3284 14 20
mcmv-miR-M95-1-3p MIMAT0005554 Mouse cytomegalovirus miR-M95-1-3p 14 20
mmu-miR-6236 MIMAT0024857 Mus musculus miR-6236 12 80
nta-miR6148a MIMAT0024737 Nicotiana tabacum miR6148a 12 80
sbi-miR5386 MIMAT0021684 Sorghum bicolor miR5386 12 80
pma-miR-4588 MIMAT0019621 Petromyzon marinus miR-4588 12 80
cin-miR-4140-5p MIMAT0016738 Ciona intestinalis miR-4140-5p 12 80
bmo-miR-2999 MIMAT0014660 Bombyx mori miR-2999 12 80
bmo-miR-2762 MIMAT0013636 Bombyx mori miR-2762 12 80
cte-miR-2713 MIMAT0013582 Capitella teleta miR-2713 12 80
rno-miR-375-5p MIMAT0017301 Rattus norvegicus miR-375-5p 12 80
mmu-miR-375-5p MIMAT0017078 Mus musculus miR-375-5p 12 80
>ame-miR-9881 MIMAT0037285 Apis mellifera miR-9881
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgacgt 7
|||||||
Sbjct: 8 gcgacgt 2
>ppc-miR-8316-5p MIMAT0033169 Pristionchus pacificus miR-8316-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgacgt 7
|||||||
Sbjct: 2 gcgacgt 8
>pma-miR-4600 MIMAT0019634 Petromyzon marinus miR-4600
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgacgt 7
|||||||
Sbjct: 8 gcgacgt 2
>bmo-miR-3284 MIMAT0015470 Bombyx mori miR-3284
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgacgt 7
|||||||
Sbjct: 8 gcgacgt 2
>mcmv-miR-M95-1-3p MIMAT0005554 Mouse cytomegalovirus
miR-M95-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgacgt 7
|||||||
Sbjct: 2 gcgacgt 8
>mmu-miR-6236 MIMAT0024857 Mus musculus miR-6236
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgacg 6
||||||
Sbjct: 8 gcgacg 3
>nta-miR6148a MIMAT0024737 Nicotiana tabacum miR6148a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgacgt 7
||||||
Sbjct: 7 cgacgt 2
>sbi-miR5386 MIMAT0021684 Sorghum bicolor miR5386
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgacg 6
||||||
Sbjct: 6 gcgacg 1
>pma-miR-4588 MIMAT0019621 Petromyzon marinus miR-4588
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgacg 6
||||||
Sbjct: 6 gcgacg 1
>cin-miR-4140-5p MIMAT0016738 Ciona intestinalis miR-4140-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgacgt 7
||||||
Sbjct: 6 cgacgt 1
>bmo-miR-2999 MIMAT0014660 Bombyx mori miR-2999
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgacg 6
||||||
Sbjct: 3 gcgacg 8
>bmo-miR-2762 MIMAT0013636 Bombyx mori miR-2762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgacgt 7
||||||
Sbjct: 8 cgacgt 3
>cte-miR-2713 MIMAT0013582 Capitella teleta miR-2713
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgacg 6
||||||
Sbjct: 8 gcgacg 3
>rno-miR-375-5p MIMAT0017301 Rattus norvegicus miR-375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgacg 6
||||||
Sbjct: 1 gcgacg 6
>mmu-miR-375-5p MIMAT0017078 Mus musculus miR-375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgacg 6
||||||
Sbjct: 1 gcgacg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 29
Number of extensions: 24
Number of successful extensions: 15
Number of sequences better than 100.0: 15
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
