BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s45
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR169g-3p MIMAT0037087 Aegilops tauschii miR169g-3p 14 20
bdi-miR169a-3p MIMAT0027068 Brachypodium distachyon miR169a-3p 14 20
bta-miR-4444 MIMAT0036978 Bos taurus miR-4444 12 80
gsa-miR-9394b-3p MIMAT0035349 Gyrodactylus salaris miR-9394b-3p 12 80
str-miR-76-5p MIMAT0033414 Strongyloides ratti miR-76-5p 12 80
ghr-miR7500 MIMAT0029147 Gossypium hirsutum miR7500 12 80
mdo-miR-7345-3p MIMAT0028703 Monodelphis domestica miR-7345-3p 12 80
mmu-miR-6941-3p MIMAT0027783 Mus musculus miR-6941-3p 12 80
hsa-miR-6814-3p MIMAT0027529 Homo sapiens miR-6814-3p 12 80
nta-miR1919 MIMAT0024726 Nicotiana tabacum miR1919 12 80
hsa-miR-4636 MIMAT0019693 Homo sapiens miR-4636 12 80
hsa-miR-4444 MIMAT0018962 Homo sapiens miR-4444 12 80
tca-miR-3881-5p MIMAT0018858 Tribolium castaneum miR-3881-5p 12 80
aly-miR163-5p.1 MIMAT0017677 Arabidopsis lyrata miR163-5p.1 12 80
bmo-miR-279c-5p MIMAT0013610 Bombyx mori miR-279c-5p 12 80
crm-miR-67-5p MIMAT0011595 Caenorhabditis remanei miR-67-5p 12 80
mmu-miR-1897-3p MIMAT0007865 Mus musculus miR-1897-3p 12 80
>ata-miR169g-3p MIMAT0037087 Aegilops tauschii miR169g-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgagtt 7
|||||||
Sbjct: 2 gcgagtt 8
>bdi-miR169a-3p MIMAT0027068 Brachypodium distachyon miR169a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgagtt 7
|||||||
Sbjct: 2 gcgagtt 8
>bta-miR-4444 MIMAT0036978 Bos taurus miR-4444
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagtt 7
||||||
Sbjct: 3 cgagtt 8
>gsa-miR-9394b-3p MIMAT0035349 Gyrodactylus salaris miR-9394b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgagt 6
||||||
Sbjct: 3 gcgagt 8
>str-miR-76-5p MIMAT0033414 Strongyloides ratti miR-76-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagtt 7
||||||
Sbjct: 1 cgagtt 6
>ghr-miR7500 MIMAT0029147 Gossypium hirsutum miR7500
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagtt 7
||||||
Sbjct: 3 cgagtt 8
>mdo-miR-7345-3p MIMAT0028703 Monodelphis domestica miR-7345-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgagt 6
||||||
Sbjct: 6 gcgagt 1
>mmu-miR-6941-3p MIMAT0027783 Mus musculus miR-6941-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgagtt 7
||||||
Sbjct: 8 cgagtt 3
>hsa-miR-6814-3p MIMAT0027529 Homo sapiens miR-6814-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgagt 6
||||||
Sbjct: 6 gcgagt 1
>nta-miR1919 MIMAT0024726 Nicotiana tabacum miR1919
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgagt 6
||||||
Sbjct: 3 gcgagt 8
>hsa-miR-4636 MIMAT0019693 Homo sapiens miR-4636
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgagtt 7
||||||
Sbjct: 6 cgagtt 1
>hsa-miR-4444 MIMAT0018962 Homo sapiens miR-4444
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagtt 7
||||||
Sbjct: 3 cgagtt 8
>tca-miR-3881-5p MIMAT0018858 Tribolium castaneum miR-3881-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagtt 7
||||||
Sbjct: 2 cgagtt 7
>aly-miR163-5p.1 MIMAT0017677 Arabidopsis lyrata miR163-5p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagtt 7
||||||
Sbjct: 1 cgagtt 6
>bmo-miR-279c-5p MIMAT0013610 Bombyx mori miR-279c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgagt 6
||||||
Sbjct: 3 gcgagt 8
>crm-miR-67-5p MIMAT0011595 Caenorhabditis remanei miR-67-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgagtt 7
||||||
Sbjct: 6 cgagtt 1
>mmu-miR-1897-3p MIMAT0007865 Mus musculus miR-1897-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgagtt 7
||||||
Sbjct: 8 cgagtt 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 26
Number of extensions: 24
Number of successful extensions: 17
Number of sequences better than 100.0: 17
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 17
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
