BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bbe-miR-252b-3p MIMAT0031658 Branchiostoma belcheri miR-252b-3p 16 6.9
mdo-miR-7295-3p MIMAT0028575 Monodelphis domestica miR-7295-3p 16 6.9
hvt-miR-H1 MIMAT0012710 Herpesvirus of miR-H1 16 6.9
bfl-miR-252b-3p MIMAT0019151 Branchiostoma floridae miR-252b-3p 16 6.9
hsa-miR-6836-5p MIMAT0027574 Homo sapiens miR-6836-5p 14 27
rno-miR-6332 MIMAT0025073 Rattus norvegicus miR-6332 14 27
bmo-miR-3389-3p MIMAT0015590 Bombyx mori miR-3389-3p 14 27
bmo-miR-2758-3p MIMAT0013630 Bombyx mori miR-2758-3p 14 27
hsa-miR-1909-3p MIMAT0007883 Homo sapiens miR-1909-3p 14 27
hsa-miR-1539 MIMAT0007401 Homo sapiens miR-1539 14 27
>bbe-miR-252b-3p MIMAT0031658 Branchiostoma belcheri miR-252b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gcgcaggg 8
||||||||
Sbjct: 8 gcgcaggg 1
>mdo-miR-7295-3p MIMAT0028575 Monodelphis domestica miR-7295-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gcgcaggg 8
||||||||
Sbjct: 8 gcgcaggg 1
>hvt-miR-H1 MIMAT0012710 Herpesvirus of miR-H1
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcgcaggg 8
||||||||
Sbjct: 1 gcgcaggg 8
>bfl-miR-252b-3p MIMAT0019151 Branchiostoma floridae miR-252b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gcgcaggg 8
||||||||
Sbjct: 8 gcgcaggg 1
>hsa-miR-6836-5p MIMAT0027574 Homo sapiens miR-6836-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgcaggg 8
|||||||
Sbjct: 1 cgcaggg 7
>rno-miR-6332 MIMAT0025073 Rattus norvegicus miR-6332
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgcaggg 8
|||||||
Sbjct: 1 cgcaggg 7
>bmo-miR-3389-3p MIMAT0015590 Bombyx mori miR-3389-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcaggg 8
|||||||
Sbjct: 7 cgcaggg 1
>bmo-miR-2758-3p MIMAT0013630 Bombyx mori miR-2758-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcaggg 8
|||||||
Sbjct: 7 cgcaggg 1
>hsa-miR-1909-3p MIMAT0007883 Homo sapiens miR-1909-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgcaggg 8
|||||||
Sbjct: 1 cgcaggg 7
>hsa-miR-1539 MIMAT0007401 Homo sapiens miR-1539
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgcagg 7
|||||||
Sbjct: 8 gcgcagg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 105
Number of successful extensions: 71
Number of sequences better than 100.0: 10
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
