BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= kshv-miR-k12-7-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppc-miR-8331-5p MIMAT0033206 Pristionchus pacificus miR-8331-5p        14      20
bta-miR-6521 MIMAT0025539 Bos taurus miR-6521                          14      20
kshv-miR-K12-7-5p MIMAT0015217 Kaposi sarcoma-associated miR-K12...    14      20
tch-miR-652-3p MIMAT0036576 Tupaia chinensis miR-652-3p                12      80
chi-miR-410-5p MIMAT0036211 Capra hircus miR-410-5p                    12      80
sma-miR-8437-5p MIMAT0033578 Schistosoma mansoni miR-8437-5p           12      80
mdo-miR-7295-5p MIMAT0028574 Monodelphis domestica miR-7295-5p         12      80
mmu-miR-7040-3p MIMAT0027985 Mus musculus miR-7040-3p                  12      80
hsa-miR-6788-3p MIMAT0027477 Homo sapiens miR-6788-3p                  12      80
mmu-miR-6392-5p MIMAT0025141 Mus musculus miR-6392-5p                  12      80
bta-miR-652 MIMAT0024578 Bos taurus miR-652                            12      80
ggo-miR-652 MIMAT0024153 Gorilla gorilla miR-652                       12      80
cgr-miR-652-3p MIMAT0023992 Cricetulus griseus miR-652-3p              12      80
pma-miR-4608 MIMAT0019642 Petromyzon marinus miR-4608                  12      80
pma-miR-132-5p MIMAT0019458 Petromyzon marinus miR-132-5p              12      80
oar-miR-410-5p MIMAT0019333 Ovis aries miR-410-5p                      12      80
tca-miR-3887-3p MIMAT0018873 Tribolium castaneum miR-3887-3p           12      80
tca-miR-989-5p MIMAT0018822 Tribolium castaneum miR-989-5p             12      80
tca-miR-3854-3p MIMAT0018765 Tribolium castaneum miR-3854-3p           12      80
pab-miR3711 MIMAT0018144 Picea abies miR3711                           12      80
ppy-miR-652 MIMAT0016085 Pongo pygmaeus miR-652                        12      80
hsv1-miR-H17 MIMAT0014695 Herpes Simplex miR-H17                       12      80
eca-miR-652 MIMAT0013240 Equus caballus miR-652                        12      80
eca-miR-675 MIMAT0013053 Equus caballus miR-675                        12      80
lgi-miR-2722 MIMAT0013589 Lottia gigantea miR-2722                     12      80
sme-miR-2160-5p MIMAT0011254 Schmidtea mediterranea miR-2160-5p        12      80
ptr-miR-652 MIMAT0008302 Pan troglodytes miR-652                       12      80
cfa-miR-652 MIMAT0006743 Canis familiaris miR-652                      12      80
mml-miR-652 MIMAT0006493 Macaca mulatta miR-652                        12      80
age-miR-506 MIMAT0005740 Ateles geoffroyi miR-506                      12      80
rno-miR-652-3p MIMAT0005342 Rattus norvegicus miR-652-3p               12      80
mmu-miR-652-3p MIMAT0003711 Mus musculus miR-652-3p                    12      80
hsa-miR-652-3p MIMAT0003322 Homo sapiens miR-652-3p                    12      80
>ppc-miR-8331-5p MIMAT0033206 Pristionchus pacificus miR-8331-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcgccac 7
         |||||||
Sbjct: 2 gcgccac 8
>bta-miR-6521 MIMAT0025539 Bos taurus miR-6521
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcgccac 7
         |||||||
Sbjct: 7 gcgccac 1
>kshv-miR-K12-7-5p MIMAT0015217 Kaposi sarcoma-associated
         miR-K12-7-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcgccac 7
         |||||||
Sbjct: 2 gcgccac 8
>tch-miR-652-3p MIMAT0036576 Tupaia chinensis miR-652-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>chi-miR-410-5p MIMAT0036211 Capra hircus miR-410-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgccac 7
         ||||||
Sbjct: 1 cgccac 6
>sma-miR-8437-5p MIMAT0033578 Schistosoma mansoni miR-8437-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 6 gcgcca 1
>mdo-miR-7295-5p MIMAT0028574 Monodelphis domestica miR-7295-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgccac 7
         ||||||
Sbjct: 3 cgccac 8
>mmu-miR-7040-3p MIMAT0027985 Mus musculus miR-7040-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgccac 7
         ||||||
Sbjct: 1 cgccac 6
>hsa-miR-6788-3p MIMAT0027477 Homo sapiens miR-6788-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgccac 7
         ||||||
Sbjct: 3 cgccac 8
>mmu-miR-6392-5p MIMAT0025141 Mus musculus miR-6392-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>bta-miR-652 MIMAT0024578 Bos taurus miR-652
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>ggo-miR-652 MIMAT0024153 Gorilla gorilla miR-652
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>cgr-miR-652-3p MIMAT0023992 Cricetulus griseus miR-652-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>pma-miR-4608 MIMAT0019642 Petromyzon marinus miR-4608
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgccac 7
         ||||||
Sbjct: 8 cgccac 3
>pma-miR-132-5p MIMAT0019458 Petromyzon marinus miR-132-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgccac 7
         ||||||
Sbjct: 8 cgccac 3
>oar-miR-410-5p MIMAT0019333 Ovis aries miR-410-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgccac 7
         ||||||
Sbjct: 1 cgccac 6
>tca-miR-3887-3p MIMAT0018873 Tribolium castaneum miR-3887-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 6 gcgcca 1
>tca-miR-989-5p MIMAT0018822 Tribolium castaneum miR-989-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgccac 7
         ||||||
Sbjct: 1 cgccac 6
>tca-miR-3854-3p MIMAT0018765 Tribolium castaneum miR-3854-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgccac 7
         ||||||
Sbjct: 8 cgccac 3
>pab-miR3711 MIMAT0018144 Picea abies miR3711
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 6 gcgcca 1
>ppy-miR-652 MIMAT0016085 Pongo pygmaeus miR-652
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>hsv1-miR-H17 MIMAT0014695 Herpes Simplex miR-H17
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 6 gcgcca 1
>eca-miR-652 MIMAT0013240 Equus caballus miR-652
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>eca-miR-675 MIMAT0013053 Equus caballus miR-675
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 6 gcgcca 1
>lgi-miR-2722 MIMAT0013589 Lottia gigantea miR-2722
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 6 gcgcca 1
>sme-miR-2160-5p MIMAT0011254 Schmidtea mediterranea miR-2160-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 6 gcgcca 1
>ptr-miR-652 MIMAT0008302 Pan troglodytes miR-652
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>cfa-miR-652 MIMAT0006743 Canis familiaris miR-652
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>mml-miR-652 MIMAT0006493 Macaca mulatta miR-652
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>age-miR-506 MIMAT0005740 Ateles geoffroyi miR-506
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>rno-miR-652-3p MIMAT0005342 Rattus norvegicus miR-652-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>mmu-miR-652-3p MIMAT0003711 Mus musculus miR-652-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
>hsa-miR-652-3p MIMAT0003322 Homo sapiens miR-652-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgcca 6
         ||||||
Sbjct: 8 gcgcca 3
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 47
Number of extensions: 44
Number of successful extensions: 33
Number of sequences better than 100.0: 33
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 33
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)