BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-7-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8331-5p MIMAT0033206 Pristionchus pacificus miR-8331-5p 14 20
bta-miR-6521 MIMAT0025539 Bos taurus miR-6521 14 20
kshv-miR-K12-7-5p MIMAT0015217 Kaposi sarcoma-associated miR-K12... 14 20
tch-miR-652-3p MIMAT0036576 Tupaia chinensis miR-652-3p 12 80
chi-miR-410-5p MIMAT0036211 Capra hircus miR-410-5p 12 80
sma-miR-8437-5p MIMAT0033578 Schistosoma mansoni miR-8437-5p 12 80
mdo-miR-7295-5p MIMAT0028574 Monodelphis domestica miR-7295-5p 12 80
mmu-miR-7040-3p MIMAT0027985 Mus musculus miR-7040-3p 12 80
hsa-miR-6788-3p MIMAT0027477 Homo sapiens miR-6788-3p 12 80
mmu-miR-6392-5p MIMAT0025141 Mus musculus miR-6392-5p 12 80
bta-miR-652 MIMAT0024578 Bos taurus miR-652 12 80
ggo-miR-652 MIMAT0024153 Gorilla gorilla miR-652 12 80
cgr-miR-652-3p MIMAT0023992 Cricetulus griseus miR-652-3p 12 80
pma-miR-4608 MIMAT0019642 Petromyzon marinus miR-4608 12 80
pma-miR-132-5p MIMAT0019458 Petromyzon marinus miR-132-5p 12 80
oar-miR-410-5p MIMAT0019333 Ovis aries miR-410-5p 12 80
tca-miR-3887-3p MIMAT0018873 Tribolium castaneum miR-3887-3p 12 80
tca-miR-989-5p MIMAT0018822 Tribolium castaneum miR-989-5p 12 80
tca-miR-3854-3p MIMAT0018765 Tribolium castaneum miR-3854-3p 12 80
pab-miR3711 MIMAT0018144 Picea abies miR3711 12 80
ppy-miR-652 MIMAT0016085 Pongo pygmaeus miR-652 12 80
hsv1-miR-H17 MIMAT0014695 Herpes Simplex miR-H17 12 80
eca-miR-652 MIMAT0013240 Equus caballus miR-652 12 80
eca-miR-675 MIMAT0013053 Equus caballus miR-675 12 80
lgi-miR-2722 MIMAT0013589 Lottia gigantea miR-2722 12 80
sme-miR-2160-5p MIMAT0011254 Schmidtea mediterranea miR-2160-5p 12 80
ptr-miR-652 MIMAT0008302 Pan troglodytes miR-652 12 80
cfa-miR-652 MIMAT0006743 Canis familiaris miR-652 12 80
mml-miR-652 MIMAT0006493 Macaca mulatta miR-652 12 80
age-miR-506 MIMAT0005740 Ateles geoffroyi miR-506 12 80
rno-miR-652-3p MIMAT0005342 Rattus norvegicus miR-652-3p 12 80
mmu-miR-652-3p MIMAT0003711 Mus musculus miR-652-3p 12 80
hsa-miR-652-3p MIMAT0003322 Homo sapiens miR-652-3p 12 80
>ppc-miR-8331-5p MIMAT0033206 Pristionchus pacificus miR-8331-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgccac 7
|||||||
Sbjct: 2 gcgccac 8
>bta-miR-6521 MIMAT0025539 Bos taurus miR-6521
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgccac 7
|||||||
Sbjct: 7 gcgccac 1
>kshv-miR-K12-7-5p MIMAT0015217 Kaposi sarcoma-associated
miR-K12-7-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgccac 7
|||||||
Sbjct: 2 gcgccac 8
>tch-miR-652-3p MIMAT0036576 Tupaia chinensis miR-652-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>chi-miR-410-5p MIMAT0036211 Capra hircus miR-410-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgccac 7
||||||
Sbjct: 1 cgccac 6
>sma-miR-8437-5p MIMAT0033578 Schistosoma mansoni miR-8437-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 6 gcgcca 1
>mdo-miR-7295-5p MIMAT0028574 Monodelphis domestica miR-7295-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgccac 7
||||||
Sbjct: 3 cgccac 8
>mmu-miR-7040-3p MIMAT0027985 Mus musculus miR-7040-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgccac 7
||||||
Sbjct: 1 cgccac 6
>hsa-miR-6788-3p MIMAT0027477 Homo sapiens miR-6788-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgccac 7
||||||
Sbjct: 3 cgccac 8
>mmu-miR-6392-5p MIMAT0025141 Mus musculus miR-6392-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>bta-miR-652 MIMAT0024578 Bos taurus miR-652
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>ggo-miR-652 MIMAT0024153 Gorilla gorilla miR-652
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>cgr-miR-652-3p MIMAT0023992 Cricetulus griseus miR-652-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>pma-miR-4608 MIMAT0019642 Petromyzon marinus miR-4608
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgccac 7
||||||
Sbjct: 8 cgccac 3
>pma-miR-132-5p MIMAT0019458 Petromyzon marinus miR-132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgccac 7
||||||
Sbjct: 8 cgccac 3
>oar-miR-410-5p MIMAT0019333 Ovis aries miR-410-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgccac 7
||||||
Sbjct: 1 cgccac 6
>tca-miR-3887-3p MIMAT0018873 Tribolium castaneum miR-3887-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 6 gcgcca 1
>tca-miR-989-5p MIMAT0018822 Tribolium castaneum miR-989-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgccac 7
||||||
Sbjct: 1 cgccac 6
>tca-miR-3854-3p MIMAT0018765 Tribolium castaneum miR-3854-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgccac 7
||||||
Sbjct: 8 cgccac 3
>pab-miR3711 MIMAT0018144 Picea abies miR3711
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 6 gcgcca 1
>ppy-miR-652 MIMAT0016085 Pongo pygmaeus miR-652
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>hsv1-miR-H17 MIMAT0014695 Herpes Simplex miR-H17
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 6 gcgcca 1
>eca-miR-652 MIMAT0013240 Equus caballus miR-652
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>eca-miR-675 MIMAT0013053 Equus caballus miR-675
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 6 gcgcca 1
>lgi-miR-2722 MIMAT0013589 Lottia gigantea miR-2722
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 6 gcgcca 1
>sme-miR-2160-5p MIMAT0011254 Schmidtea mediterranea miR-2160-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 6 gcgcca 1
>ptr-miR-652 MIMAT0008302 Pan troglodytes miR-652
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>cfa-miR-652 MIMAT0006743 Canis familiaris miR-652
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>mml-miR-652 MIMAT0006493 Macaca mulatta miR-652
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>age-miR-506 MIMAT0005740 Ateles geoffroyi miR-506
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>rno-miR-652-3p MIMAT0005342 Rattus norvegicus miR-652-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>mmu-miR-652-3p MIMAT0003711 Mus musculus miR-652-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
>hsa-miR-652-3p MIMAT0003322 Homo sapiens miR-652-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgcca 6
||||||
Sbjct: 8 gcgcca 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 47
Number of extensions: 44
Number of successful extensions: 33
Number of sequences better than 100.0: 33
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 33
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)