BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b21rc-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B21RC-5p MIMAT0031770 Herpes B miR-B21RC-5p 16 6.9
cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p 14 27
hsa-miR-3195 MIMAT0015079 Homo sapiens miR-3195 14 27
bhv1-miR-B2 MIMAT0013963 Bovine herpesvirus miR-B2 14 27
mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p 14 27
osa-miR1437a MIMAT0005988 Oryza sativa miR1437a 14 27
cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271 14 27
>hbv-miR-B21RC-5p MIMAT0031770 Herpes B miR-B21RC-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcgccggg 8
||||||||
Sbjct: 1 gcgccggg 8
>cin-miR-4053-5p MIMAT0016595 Ciona intestinalis miR-4053-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgccggg 8
|||||||
Sbjct: 1 cgccggg 7
>hsa-miR-3195 MIMAT0015079 Homo sapiens miR-3195
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgccgg 7
|||||||
Sbjct: 2 gcgccgg 8
>bhv1-miR-B2 MIMAT0013963 Bovine herpesvirus miR-B2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgccgg 7
|||||||
Sbjct: 8 gcgccgg 2
>mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgccggg 8
|||||||
Sbjct: 2 cgccggg 8
>osa-miR1437a MIMAT0005988 Oryza sativa miR1437a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgccgg 7
|||||||
Sbjct: 8 gcgccgg 2
>cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgccggg 8
|||||||
Sbjct: 2 cgccggg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 73
Number of extensions: 65
Number of successful extensions: 47
Number of sequences better than 100.0: 7
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 7
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
