BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv5-miR-b8
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8                     14      20
pxy-miR-8516 MIMAT0033753 Plutella xylostella miR-8516                 14      20
pxy-miR-8503 MIMAT0033715 Plutella xylostella miR-8503                 14      20
vvi-miR3627-3p MIMAT0018018 Vitis vinifera miR3627-3p                  14      20
hsa-miR-4285 MIMAT0016913 Homo sapiens miR-4285                        14      20
esi-miR3467-5p MIMAT0017773 Ectocarpus siliculosus miR3467-5p          14      20
dsi-miR-986-3p MIMAT0012432 Drosophila simulans miR-986-3p             14      20
osa-miR2104 MIMAT0010072 Oryza sativa miR2104                          14      20
dme-miR-986-3p MIMAT0020884 Drosophila melanogaster miR-986-3p         14      20
bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13                   12      80
pxy-miR-8528b MIMAT0033770 Plutella xylostella miR-8528b               12      80
pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a               12      80
prd-miR-7950b-3p MIMAT0030817 Panagrellus redivivus miR-7950b-3p       12      80
prd-miR-7950a-3p MIMAT0030771 Panagrellus redivivus miR-7950a-3p       12      80
prd-miR-7950c-3p MIMAT0030713 Panagrellus redivivus miR-7950c-3p       12      80
hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p        12      80
hsa-miR-6869-3p MIMAT0027639 Homo sapiens miR-6869-3p                  12      80
ame-miR-6012 MIMAT0023670 Apis mellifera miR-6012                      12      80
tca-miR-6012-3p MIMAT0023566 Tribolium castaneum miR-6012-3p           12      80
hhv6b-miR-Ro6-2-5p MIMAT0026458 Human herpesvirus miR-Ro6-2-5p         12      80
sbi-miR5384 MIMAT0021682 Sorghum bicolor miR5384                       12      80
gma-miR4993 MIMAT0021011 Glycine max miR4993                           12      80
dme-miR-4985-3p MIMAT0020222 Drosophila melanogaster miR-4985-3p       12      80
cel-miR-4935 MIMAT0020141 Caenorhabditis elegans miR-4935              12      80
pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597                  12      80
hsa-miR-4467 MIMAT0018994 Homo sapiens miR-4467                        12      80
bta-miR-2886 MIMAT0013844 Bos taurus miR-2886                          12      80
bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748                         12      80
nve-miR-2047-5p MIMAT0009818 Nematostella vectensis miR-2047-5p        12      80
osa-miR1848 MIMAT0007768 Oryza sativa miR1848                          12      80
gga-miR-1560-5p MIMAT0007417 Gallus gallus miR-1560-5p                 12      80
mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p         12      80
mcmv-miR-m01-4-3p MIMAT0005539 Mouse cytomegalovirus miR-m01-4-3p      12      80
cre-miR1150.2 MIMAT0005391 Chlamydomonas reinhardtii miR1150.2         12      80
cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271                12      80
>bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggcga 7
         |||||||
Sbjct: 2 gcggcga 8
>pxy-miR-8516 MIMAT0033753 Plutella xylostella miR-8516
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggcga 7
         |||||||
Sbjct: 1 gcggcga 7
>pxy-miR-8503 MIMAT0033715 Plutella xylostella miR-8503
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggcga 7
         |||||||
Sbjct: 2 gcggcga 8
>vvi-miR3627-3p MIMAT0018018 Vitis vinifera miR3627-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcggcga 7
         |||||||
Sbjct: 7 gcggcga 1
>hsa-miR-4285 MIMAT0016913 Homo sapiens miR-4285
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggcga 7
         |||||||
Sbjct: 1 gcggcga 7
>esi-miR3467-5p MIMAT0017773 Ectocarpus siliculosus miR3467-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggcga 7
         |||||||
Sbjct: 2 gcggcga 8
>dsi-miR-986-3p MIMAT0012432 Drosophila simulans miR-986-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggcga 7
         |||||||
Sbjct: 2 gcggcga 8
>osa-miR2104 MIMAT0010072 Oryza sativa miR2104
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggcga 7
         |||||||
Sbjct: 1 gcggcga 7
>dme-miR-986-3p MIMAT0020884 Drosophila melanogaster miR-986-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggcga 7
         |||||||
Sbjct: 2 gcggcga 8
>bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 3 cggcga 8
>pxy-miR-8528b MIMAT0033770 Plutella xylostella miR-8528b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcggcg 6
         ||||||
Sbjct: 1 gcggcg 6
>pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcggcg 6
         ||||||
Sbjct: 3 gcggcg 8
>prd-miR-7950b-3p MIMAT0030817 Panagrellus redivivus
         miR-7950b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 3 cggcga 8
>prd-miR-7950a-3p MIMAT0030771 Panagrellus redivivus
         miR-7950a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 3 cggcga 8
>prd-miR-7950c-3p MIMAT0030713 Panagrellus redivivus
         miR-7950c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 3 cggcga 8
>hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 6 cggcga 1
>hsa-miR-6869-3p MIMAT0027639 Homo sapiens miR-6869-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcggcg 6
         ||||||
Sbjct: 6 gcggcg 1
>ame-miR-6012 MIMAT0023670 Apis mellifera miR-6012
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 3 cggcga 8
>tca-miR-6012-3p MIMAT0023566 Tribolium castaneum miR-6012-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 3 cggcga 8
>hhv6b-miR-Ro6-2-5p MIMAT0026458 Human herpesvirus miR-Ro6-2-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcggcg 6
         ||||||
Sbjct: 6 gcggcg 1
>sbi-miR5384 MIMAT0021682 Sorghum bicolor miR5384
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcggcg 6
         ||||||
Sbjct: 8 gcggcg 3
>gma-miR4993 MIMAT0021011 Glycine max miR4993
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcggcg 6
         ||||||
Sbjct: 3 gcggcg 8
>dme-miR-4985-3p MIMAT0020222 Drosophila melanogaster
         miR-4985-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 6 cggcga 1
>cel-miR-4935 MIMAT0020141 Caenorhabditis elegans miR-4935
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 3 cggcga 8
>pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 6 cggcga 1
>hsa-miR-4467 MIMAT0018994 Homo sapiens miR-4467
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcggcg 6
         ||||||
Sbjct: 3 gcggcg 8
>bta-miR-2886 MIMAT0013844 Bos taurus miR-2886
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcggcg 6
         ||||||
Sbjct: 8 gcggcg 3
>bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 3 cggcga 8
>nve-miR-2047-5p MIMAT0009818 Nematostella vectensis miR-2047-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 7 cggcga 2
>osa-miR1848 MIMAT0007768 Oryza sativa miR1848
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 8 cggcga 3
>gga-miR-1560-5p MIMAT0007417 Gallus gallus miR-1560-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcggcg 6
         ||||||
Sbjct: 1 gcggcg 6
>mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 6 cggcga 1
>mcmv-miR-m01-4-3p MIMAT0005539 Mouse cytomegalovirus
         miR-m01-4-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcggcg 6
         ||||||
Sbjct: 6 gcggcg 1
>cre-miR1150.2 MIMAT0005391 Chlamydomonas reinhardtii miR1150.2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 6 cggcga 1
>cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cggcga 7
         ||||||
Sbjct: 6 cggcga 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 61
Number of extensions: 52
Number of successful extensions: 35
Number of sequences better than 100.0: 35
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 35
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)