BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bhv5-miR-b8
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8 14 20
pxy-miR-8516 MIMAT0033753 Plutella xylostella miR-8516 14 20
pxy-miR-8503 MIMAT0033715 Plutella xylostella miR-8503 14 20
vvi-miR3627-3p MIMAT0018018 Vitis vinifera miR3627-3p 14 20
hsa-miR-4285 MIMAT0016913 Homo sapiens miR-4285 14 20
esi-miR3467-5p MIMAT0017773 Ectocarpus siliculosus miR3467-5p 14 20
dsi-miR-986-3p MIMAT0012432 Drosophila simulans miR-986-3p 14 20
osa-miR2104 MIMAT0010072 Oryza sativa miR2104 14 20
dme-miR-986-3p MIMAT0020884 Drosophila melanogaster miR-986-3p 14 20
bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13 12 80
pxy-miR-8528b MIMAT0033770 Plutella xylostella miR-8528b 12 80
pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a 12 80
prd-miR-7950b-3p MIMAT0030817 Panagrellus redivivus miR-7950b-3p 12 80
prd-miR-7950a-3p MIMAT0030771 Panagrellus redivivus miR-7950a-3p 12 80
prd-miR-7950c-3p MIMAT0030713 Panagrellus redivivus miR-7950c-3p 12 80
hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p 12 80
hsa-miR-6869-3p MIMAT0027639 Homo sapiens miR-6869-3p 12 80
ame-miR-6012 MIMAT0023670 Apis mellifera miR-6012 12 80
tca-miR-6012-3p MIMAT0023566 Tribolium castaneum miR-6012-3p 12 80
hhv6b-miR-Ro6-2-5p MIMAT0026458 Human herpesvirus miR-Ro6-2-5p 12 80
sbi-miR5384 MIMAT0021682 Sorghum bicolor miR5384 12 80
gma-miR4993 MIMAT0021011 Glycine max miR4993 12 80
dme-miR-4985-3p MIMAT0020222 Drosophila melanogaster miR-4985-3p 12 80
cel-miR-4935 MIMAT0020141 Caenorhabditis elegans miR-4935 12 80
pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597 12 80
hsa-miR-4467 MIMAT0018994 Homo sapiens miR-4467 12 80
bta-miR-2886 MIMAT0013844 Bos taurus miR-2886 12 80
bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748 12 80
nve-miR-2047-5p MIMAT0009818 Nematostella vectensis miR-2047-5p 12 80
osa-miR1848 MIMAT0007768 Oryza sativa miR1848 12 80
gga-miR-1560-5p MIMAT0007417 Gallus gallus miR-1560-5p 12 80
mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p 12 80
mcmv-miR-m01-4-3p MIMAT0005539 Mouse cytomegalovirus miR-m01-4-3p 12 80
cre-miR1150.2 MIMAT0005391 Chlamydomonas reinhardtii miR1150.2 12 80
cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271 12 80
>bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcga 7
|||||||
Sbjct: 2 gcggcga 8
>pxy-miR-8516 MIMAT0033753 Plutella xylostella miR-8516
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcga 7
|||||||
Sbjct: 1 gcggcga 7
>pxy-miR-8503 MIMAT0033715 Plutella xylostella miR-8503
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcga 7
|||||||
Sbjct: 2 gcggcga 8
>vvi-miR3627-3p MIMAT0018018 Vitis vinifera miR3627-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcggcga 7
|||||||
Sbjct: 7 gcggcga 1
>hsa-miR-4285 MIMAT0016913 Homo sapiens miR-4285
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcga 7
|||||||
Sbjct: 1 gcggcga 7
>esi-miR3467-5p MIMAT0017773 Ectocarpus siliculosus miR3467-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcga 7
|||||||
Sbjct: 2 gcggcga 8
>dsi-miR-986-3p MIMAT0012432 Drosophila simulans miR-986-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcga 7
|||||||
Sbjct: 2 gcggcga 8
>osa-miR2104 MIMAT0010072 Oryza sativa miR2104
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcga 7
|||||||
Sbjct: 1 gcggcga 7
>dme-miR-986-3p MIMAT0020884 Drosophila melanogaster miR-986-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcga 7
|||||||
Sbjct: 2 gcggcga 8
>bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>pxy-miR-8528b MIMAT0033770 Plutella xylostella miR-8528b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 1 gcggcg 6
>pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 3 gcggcg 8
>prd-miR-7950b-3p MIMAT0030817 Panagrellus redivivus
miR-7950b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>prd-miR-7950a-3p MIMAT0030771 Panagrellus redivivus
miR-7950a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>prd-miR-7950c-3p MIMAT0030713 Panagrellus redivivus
miR-7950c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 6 cggcga 1
>hsa-miR-6869-3p MIMAT0027639 Homo sapiens miR-6869-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcggcg 6
||||||
Sbjct: 6 gcggcg 1
>ame-miR-6012 MIMAT0023670 Apis mellifera miR-6012
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>tca-miR-6012-3p MIMAT0023566 Tribolium castaneum miR-6012-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>hhv6b-miR-Ro6-2-5p MIMAT0026458 Human herpesvirus miR-Ro6-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcggcg 6
||||||
Sbjct: 6 gcggcg 1
>sbi-miR5384 MIMAT0021682 Sorghum bicolor miR5384
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcggcg 6
||||||
Sbjct: 8 gcggcg 3
>gma-miR4993 MIMAT0021011 Glycine max miR4993
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 3 gcggcg 8
>dme-miR-4985-3p MIMAT0020222 Drosophila melanogaster
miR-4985-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 6 cggcga 1
>cel-miR-4935 MIMAT0020141 Caenorhabditis elegans miR-4935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 6 cggcga 1
>hsa-miR-4467 MIMAT0018994 Homo sapiens miR-4467
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 3 gcggcg 8
>bta-miR-2886 MIMAT0013844 Bos taurus miR-2886
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcggcg 6
||||||
Sbjct: 8 gcggcg 3
>bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcga 7
||||||
Sbjct: 3 cggcga 8
>nve-miR-2047-5p MIMAT0009818 Nematostella vectensis miR-2047-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 7 cggcga 2
>osa-miR1848 MIMAT0007768 Oryza sativa miR1848
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 8 cggcga 3
>gga-miR-1560-5p MIMAT0007417 Gallus gallus miR-1560-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 1 gcggcg 6
>mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 6 cggcga 1
>mcmv-miR-m01-4-3p MIMAT0005539 Mouse cytomegalovirus
miR-m01-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcggcg 6
||||||
Sbjct: 6 gcggcg 1
>cre-miR1150.2 MIMAT0005391 Chlamydomonas reinhardtii miR1150.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 6 cggcga 1
>cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcga 7
||||||
Sbjct: 6 cggcga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 61
Number of extensions: 52
Number of successful extensions: 35
Number of sequences better than 100.0: 35
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 35
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)