BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR83
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pxy-miR-8528b MIMAT0033770 Plutella xylostella miR-8528b 14 20
hsa-miR-8072 MIMAT0030999 Homo sapiens miR-8072 14 20
gga-miR-7475-5p MIMAT0029104 Gallus gallus miR-7475-5p 14 20
gga-miR-6556-3p MIMAT0025622 Gallus gallus miR-6556-3p 14 20
ppy-miR-2861 MIMAT0024405 Pongo pygmaeus miR-2861 14 20
hsa-miR-3960 MIMAT0019337 Homo sapiens miR-3960 14 20
mmu-miR-3960 MIMAT0019336 Mus musculus miR-3960 14 20
pxy-miR-8516 MIMAT0033753 Plutella xylostella miR-8516 12 80
pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a 12 80
hsa-miR-6869-3p MIMAT0027639 Homo sapiens miR-6869-3p 12 80
mmu-miR-6241 MIMAT0024862 Mus musculus miR-6241 12 80
hhv6b-miR-Ro6-2-5p MIMAT0026458 Human herpesvirus miR-Ro6-2-5p 12 80
bra-miR5724 MIMAT0023023 Brassica rapa miR5724 12 80
sbi-miR5384 MIMAT0021682 Sorghum bicolor miR5384 12 80
gma-miR4993 MIMAT0021011 Glycine max miR4993 12 80
dme-miR-4948-5p MIMAT0020158 Drosophila melanogaster miR-4948-5p 12 80
cel-miR-4923b MIMAT0020131 Caenorhabditis elegans miR-4923b 12 80
hsa-miR-4467 MIMAT0018994 Homo sapiens miR-4467 12 80
hsa-miR-4285 MIMAT0016913 Homo sapiens miR-4285 12 80
ppy-miR-1908 MIMAT0016237 Pongo pygmaeus miR-1908 12 80
bta-miR-2886 MIMAT0013844 Bos taurus miR-2886 12 80
bta-miR-2885 MIMAT0013843 Bos taurus miR-2885 12 80
mmu-miR-2137 MIMAT0011213 Mus musculus miR-2137 12 80
osa-miR2104 MIMAT0010072 Oryza sativa miR2104 12 80
hsa-miR-1908-5p MIMAT0007881 Homo sapiens miR-1908-5p 12 80
gga-miR-1560-5p MIMAT0007417 Gallus gallus miR-1560-5p 12 80
mcmv-miR-m01-4-3p MIMAT0005539 Mouse cytomegalovirus miR-m01-4-3p 12 80
>pxy-miR-8528b MIMAT0033770 Plutella xylostella miR-8528b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcgg 7
|||||||
Sbjct: 1 gcggcgg 7
>hsa-miR-8072 MIMAT0030999 Homo sapiens miR-8072
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcgg 7
|||||||
Sbjct: 2 gcggcgg 8
>gga-miR-7475-5p MIMAT0029104 Gallus gallus miR-7475-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcggcgg 7
|||||||
Sbjct: 7 gcggcgg 1
>gga-miR-6556-3p MIMAT0025622 Gallus gallus miR-6556-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcgg 7
|||||||
Sbjct: 2 gcggcgg 8
>ppy-miR-2861 MIMAT0024405 Pongo pygmaeus miR-2861
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcgg 7
|||||||
Sbjct: 2 gcggcgg 8
>hsa-miR-3960 MIMAT0019337 Homo sapiens miR-3960
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcgg 7
|||||||
Sbjct: 2 gcggcgg 8
>mmu-miR-3960 MIMAT0019336 Mus musculus miR-3960
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcggcgg 7
|||||||
Sbjct: 2 gcggcgg 8
>pxy-miR-8516 MIMAT0033753 Plutella xylostella miR-8516
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 1 gcggcg 6
>pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 3 gcggcg 8
>hsa-miR-6869-3p MIMAT0027639 Homo sapiens miR-6869-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcggcg 6
||||||
Sbjct: 6 gcggcg 1
>mmu-miR-6241 MIMAT0024862 Mus musculus miR-6241
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgg 7
||||||
Sbjct: 3 cggcgg 8
>hhv6b-miR-Ro6-2-5p MIMAT0026458 Human herpesvirus miR-Ro6-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcggcg 6
||||||
Sbjct: 6 gcggcg 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcgg 7
||||||
Sbjct: 8 cggcgg 3
>bra-miR5724 MIMAT0023023 Brassica rapa miR5724
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggcgg 7
||||||
Sbjct: 8 cggcgg 3
>sbi-miR5384 MIMAT0021682 Sorghum bicolor miR5384
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcggcg 6
||||||
Sbjct: 8 gcggcg 3
>gma-miR4993 MIMAT0021011 Glycine max miR4993
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 3 gcggcg 8
>dme-miR-4948-5p MIMAT0020158 Drosophila melanogaster
miR-4948-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgg 7
||||||
Sbjct: 1 cggcgg 6
>cel-miR-4923b MIMAT0020131 Caenorhabditis elegans miR-4923b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgg 7
||||||
Sbjct: 3 cggcgg 8
>hsa-miR-4467 MIMAT0018994 Homo sapiens miR-4467
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 3 gcggcg 8
>hsa-miR-4285 MIMAT0016913 Homo sapiens miR-4285
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 1 gcggcg 6
>ppy-miR-1908 MIMAT0016237 Pongo pygmaeus miR-1908
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgg 7
||||||
Sbjct: 1 cggcgg 6
>bta-miR-2886 MIMAT0013844 Bos taurus miR-2886
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcggcg 6
||||||
Sbjct: 8 gcggcg 3
>bta-miR-2885 MIMAT0013843 Bos taurus miR-2885
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgg 7
||||||
Sbjct: 1 cggcgg 6
>mmu-miR-2137 MIMAT0011213 Mus musculus miR-2137
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgg 7
||||||
Sbjct: 3 cggcgg 8
>osa-miR2104 MIMAT0010072 Oryza sativa miR2104
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 1 gcggcg 6
>hsa-miR-1908-5p MIMAT0007881 Homo sapiens miR-1908-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggcgg 7
||||||
Sbjct: 1 cggcgg 6
>gga-miR-1560-5p MIMAT0007417 Gallus gallus miR-1560-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcggcg 6
||||||
Sbjct: 1 gcggcg 6
>mcmv-miR-m01-4-3p MIMAT0005539 Mouse cytomegalovirus
miR-m01-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcggcg 6
||||||
Sbjct: 6 gcggcg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 44
Number of extensions: 37
Number of successful extensions: 28
Number of sequences better than 100.0: 27
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 28
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
