BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bhv1-miR-b8-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bhv1-miR-B8-5p MIMAT0013970 Bovine herpesvirus miR-B8-5p 14 20
rno-miR-666-5p MIMAT0012855 Rattus norvegicus miR-666-5p 14 20
mmu-miR-666-5p MIMAT0003737 Mus musculus miR-666-5p 14 20
ssc-miR-9860-5p MIMAT0037079 Sus scrofa miR-9860-5p 12 80
cfa-miR-8896 MIMAT0034404 Canis familiaris miR-8896 12 80
ppc-miR-63j-5p MIMAT0032916 Pristionchus pacificus miR-63j-5p 12 80
mmu-miR-8111 MIMAT0031417 Mus musculus miR-8111 12 80
mmu-miR-7671-3p MIMAT0029849 Mus musculus miR-7671-3p 12 80
mmu-miR-7082-5p MIMAT0028070 Mus musculus miR-7082-5p 12 80
hsa-miR-6862-5p MIMAT0027625 Homo sapiens miR-6862-5p 12 80
gma-miR169l-3p MIMAT0022994 Glycine max miR169l-3p 12 80
mmu-miR-5126 MIMAT0020637 Mus musculus miR-5126 12 80
dme-miR-4948-5p MIMAT0020158 Drosophila melanogaster miR-4948-5p 12 80
cin-miR-4158-5p MIMAT0016764 Ciona intestinalis miR-4158-5p 12 80
rno-miR-3584-3p MIMAT0017876 Rattus norvegicus miR-3584-3p 12 80
ppy-miR-1471 MIMAT0016233 Pongo pygmaeus miR-1471 12 80
bta-miR-2899 MIMAT0013857 Bos taurus miR-2899 12 80
bta-miR-2360 MIMAT0011898 Bos taurus miR-2360 12 80
mmu-miR-1946b MIMAT0009443 Mus musculus miR-1946b 12 80
hsa-miR-1471 MIMAT0007349 Homo sapiens miR-1471 12 80
cel-miR-273 MIMAT0000329 Caenorhabditis elegans miR-273 12 80
>bhv1-miR-B8-5p MIMAT0013970 Bovine herpesvirus miR-B8-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgggca 7
|||||||
Sbjct: 2 gcgggca 8
>rno-miR-666-5p MIMAT0012855 Rattus norvegicus miR-666-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgggca 7
|||||||
Sbjct: 2 gcgggca 8
>mmu-miR-666-5p MIMAT0003737 Mus musculus miR-666-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgggca 7
|||||||
Sbjct: 2 gcgggca 8
>ssc-miR-9860-5p MIMAT0037079 Sus scrofa miR-9860-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgggca 7
||||||
Sbjct: 7 cgggca 2
>cfa-miR-8896 MIMAT0034404 Canis familiaris miR-8896
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgggca 7
||||||
Sbjct: 3 cgggca 8
>ppc-miR-63j-5p MIMAT0032916 Pristionchus pacificus miR-63j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgggc 6
||||||
Sbjct: 8 gcgggc 3
>mmu-miR-8111 MIMAT0031417 Mus musculus miR-8111
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgggca 7
||||||
Sbjct: 3 cgggca 8
>mmu-miR-7671-3p MIMAT0029849 Mus musculus miR-7671-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgggc 6
||||||
Sbjct: 3 gcgggc 8
>mmu-miR-7082-5p MIMAT0028070 Mus musculus miR-7082-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgggca 7
||||||
Sbjct: 3 cgggca 8
>hsa-miR-6862-5p MIMAT0027625 Homo sapiens miR-6862-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgggca 7
||||||
Sbjct: 1 cgggca 6
>gma-miR169l-3p MIMAT0022994 Glycine max miR169l-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgggca 7
||||||
Sbjct: 1 cgggca 6
>mmu-miR-5126 MIMAT0020637 Mus musculus miR-5126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgggc 6
||||||
Sbjct: 1 gcgggc 6
>dme-miR-4948-5p MIMAT0020158 Drosophila melanogaster
miR-4948-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgggc 6
||||||
Sbjct: 3 gcgggc 8
>cin-miR-4158-5p MIMAT0016764 Ciona intestinalis miR-4158-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgggca 7
||||||
Sbjct: 6 cgggca 1
>rno-miR-3584-3p MIMAT0017876 Rattus norvegicus miR-3584-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgggc 6
||||||
Sbjct: 6 gcgggc 1
>ppy-miR-1471 MIMAT0016233 Pongo pygmaeus miR-1471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgggc 6
||||||
Sbjct: 6 gcgggc 1
>bta-miR-2899 MIMAT0013857 Bos taurus miR-2899
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgggc 6
||||||
Sbjct: 3 gcgggc 8
>bta-miR-2360 MIMAT0011898 Bos taurus miR-2360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgggca 7
||||||
Sbjct: 1 cgggca 6
>mmu-miR-1946b MIMAT0009443 Mus musculus miR-1946b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgggca 7
||||||
Sbjct: 3 cgggca 8
>hsa-miR-1471 MIMAT0007349 Homo sapiens miR-1471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgggc 6
||||||
Sbjct: 6 gcgggc 1
>cel-miR-273 MIMAT0000329 Caenorhabditis elegans miR-273
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgggca 7
||||||
Sbjct: 6 cgggca 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 32
Number of extensions: 29
Number of successful extensions: 21
Number of sequences better than 100.0: 21
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 21
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
