BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-ul70-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-9404-5p MIMAT0035356 Gyrodactylus salaris miR-9404-5p 14 20
gga-miR-6592-3p MIMAT0025685 Gallus gallus miR-6592-3p 14 20
ppy-miR-139-3p MIMAT0015762 Pongo pygmaeus miR-139-3p 14 20
eca-miR-139-3p MIMAT0012984 Equus caballus miR-139-3p 14 20
ptr-miR-139 MIMAT0008035 Pan troglodytes miR-139 14 20
mml-miR-139-3p MIMAT0006196 Macaca mulatta miR-139-3p 14 20
hcmv-miR-UL70-5p MIMAT0003342 Human cytomegalovirus miR-UL70-5p 14 20
chi-miR-340-3p MIMAT0036156 Capra hircus miR-340-3p 12 80
efu-miR-139 MIMAT0035163 Eptesicus fuscus miR-139 12 80
eca-miR-9166 MIMAT0034744 Equus caballus miR-9166 12 80
eca-miR-9052 MIMAT0034596 Equus caballus miR-9052 12 80
ppc-miR-8351-3p MIMAT0033255 Pristionchus pacificus miR-8351-3p 12 80
ppc-miR-8306-5p MIMAT0033136 Pristionchus pacificus miR-8306-5p 12 80
bdi-miR7783-5p MIMAT0030320 Brachypodium distachyon miR7783-5p 12 80
mmu-miR-7221-5p MIMAT0028410 Mus musculus miR-7221-5p 12 80
mml-miR-6827-3p MIMAT0028313 Macaca mulatta miR-6827-3p 12 80
hsa-miR-6827-3p MIMAT0027555 Homo sapiens miR-6827-3p 12 80
sma-miR-2b-5p MIMAT0025031 Schistosoma mansoni miR-2b-5p 12 80
cgr-miR-340-3p MIMAT0023921 Cricetulus griseus miR-340-3p 12 80
cgr-miR-139-3p MIMAT0023766 Cricetulus griseus miR-139-3p 12 80
ame-miR-6000b MIMAT0023661 Apis mellifera miR-6000b 12 80
gma-miR5675 MIMAT0022460 Glycine max miR5675 12 80
tca-miR-3875-5p MIMAT0018842 Tribolium castaneum miR-3875-5p 12 80
tca-miR-9c-3p MIMAT0018715 Tribolium castaneum miR-9c-3p 12 80
cin-miR-29-5p MIMAT0016401 Ciona intestinalis miR-29-5p 12 80
sja-miR-3496 MIMAT0016305 Schistosoma japonicum miR-3496 12 80
sja-miR-2b-5p MIMAT0016247 Schistosoma japonicum miR-2b-5p 12 80
bhv1-miR-B6-3p MIMAT0013968 Bovine herpesvirus miR-B6-3p 12 80
eca-miR-340-3p MIMAT0013067 Equus caballus miR-340-3p 12 80
bta-miR-2328-3p MIMAT0011858 Bos taurus miR-2328-3p 12 80
nve-miR-2040b-3p MIMAT0009809 Nematostella vectensis miR-2040b-3p 12 80
bta-miR-340 MIMAT0009296 Bos taurus miR-340 12 80
cfa-miR-139 MIMAT0006645 Canis familiaris miR-139 12 80
mml-miR-340-3p MIMAT0026854 Macaca mulatta miR-340-3p 12 80
oan-miR-1410 MIMAT0007228 Ornithorhynchus anatinus miR-1410 12 80
sme-miR-12-3p MIMAT0012100 Schmidtea mediterranea miR-12-3p 12 80
ssc-miR-139-3p MIMAT0022921 Sus scrofa miR-139-3p 12 80
rno-miR-139-3p MIMAT0004735 Rattus norvegicus miR-139-3p 12 80
hsa-miR-340-3p MIMAT0000750 Homo sapiens miR-340-3p 12 80
mmu-miR-139-3p MIMAT0004662 Mus musculus miR-139-3p 12 80
mmu-miR-340-3p MIMAT0000586 Mus musculus miR-340-3p 12 80
rno-miR-340-3p MIMAT0000585 Rattus norvegicus miR-340-3p 12 80
hsa-miR-139-3p MIMAT0004552 Homo sapiens miR-139-3p 12 80
>gsa-miR-9404-5p MIMAT0035356 Gyrodactylus salaris miR-9404-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgtctc 7
|||||||
Sbjct: 1 gcgtctc 7
>gga-miR-6592-3p MIMAT0025685 Gallus gallus miR-6592-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgtctc 7
|||||||
Sbjct: 2 gcgtctc 8
>ppy-miR-139-3p MIMAT0015762 Pongo pygmaeus miR-139-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgtctc 7
|||||||
Sbjct: 8 gcgtctc 2
>eca-miR-139-3p MIMAT0012984 Equus caballus miR-139-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgtctc 7
|||||||
Sbjct: 8 gcgtctc 2
>ptr-miR-139 MIMAT0008035 Pan troglodytes miR-139
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgtctc 7
|||||||
Sbjct: 8 gcgtctc 2
>mml-miR-139-3p MIMAT0006196 Macaca mulatta miR-139-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgtctc 7
|||||||
Sbjct: 8 gcgtctc 2
>hcmv-miR-UL70-5p MIMAT0003342 Human cytomegalovirus miR-UL70-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgtctc 7
|||||||
Sbjct: 2 gcgtctc 8
>chi-miR-340-3p MIMAT0036156 Capra hircus miR-340-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>efu-miR-139 MIMAT0035163 Eptesicus fuscus miR-139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 8 cgtctc 3
>eca-miR-9166 MIMAT0034744 Equus caballus miR-9166
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgtct 6
||||||
Sbjct: 3 gcgtct 8
>eca-miR-9052 MIMAT0034596 Equus caballus miR-9052
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 8 cgtctc 3
>ppc-miR-8351-3p MIMAT0033255 Pristionchus pacificus miR-8351-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 7 cgtctc 2
>ppc-miR-8306-5p MIMAT0033136 Pristionchus pacificus miR-8306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 1 cgtctc 6
>bdi-miR7783-5p MIMAT0030320 Brachypodium distachyon miR7783-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgtct 6
||||||
Sbjct: 1 gcgtct 6
>mmu-miR-7221-5p MIMAT0028410 Mus musculus miR-7221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 1 cgtctc 6
>mml-miR-6827-3p MIMAT0028313 Macaca mulatta miR-6827-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>hsa-miR-6827-3p MIMAT0027555 Homo sapiens miR-6827-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>sma-miR-2b-5p MIMAT0025031 Schistosoma mansoni miR-2b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 1 cgtctc 6
>cgr-miR-340-3p MIMAT0023921 Cricetulus griseus miR-340-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>cgr-miR-139-3p MIMAT0023766 Cricetulus griseus miR-139-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 8 cgtctc 3
>ame-miR-6000b MIMAT0023661 Apis mellifera miR-6000b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 8 cgtctc 3
>gma-miR5675 MIMAT0022460 Glycine max miR5675
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 8 cgtctc 3
>tca-miR-3875-5p MIMAT0018842 Tribolium castaneum miR-3875-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgtct 6
||||||
Sbjct: 1 gcgtct 6
>tca-miR-9c-3p MIMAT0018715 Tribolium castaneum miR-9c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgtct 6
||||||
Sbjct: 3 gcgtct 8
>cin-miR-29-5p MIMAT0016401 Ciona intestinalis miR-29-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>sja-miR-3496 MIMAT0016305 Schistosoma japonicum miR-3496
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgtct 6
||||||
Sbjct: 3 gcgtct 8
>sja-miR-2b-5p MIMAT0016247 Schistosoma japonicum miR-2b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 1 cgtctc 6
>bhv1-miR-B6-3p MIMAT0013968 Bovine herpesvirus miR-B6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 1 cgtctc 6
>eca-miR-340-3p MIMAT0013067 Equus caballus miR-340-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>bta-miR-2328-3p MIMAT0011858 Bos taurus miR-2328-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgtct 6
||||||
Sbjct: 3 gcgtct 8
>nve-miR-2040b-3p MIMAT0009809 Nematostella vectensis
miR-2040b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>bta-miR-340 MIMAT0009296 Bos taurus miR-340
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>cfa-miR-139 MIMAT0006645 Canis familiaris miR-139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 8 cgtctc 3
>mml-miR-340-3p MIMAT0026854 Macaca mulatta miR-340-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>oan-miR-1410 MIMAT0007228 Ornithorhynchus anatinus miR-1410
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 6 cgtctc 1
>sme-miR-12-3p MIMAT0012100 Schmidtea mediterranea miR-12-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 1 cgtctc 6
>ssc-miR-139-3p MIMAT0022921 Sus scrofa miR-139-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 8 cgtctc 3
>rno-miR-139-3p MIMAT0004735 Rattus norvegicus miR-139-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 8 cgtctc 3
>hsa-miR-340-3p MIMAT0000750 Homo sapiens miR-340-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>mmu-miR-139-3p MIMAT0004662 Mus musculus miR-139-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 8 cgtctc 3
>mmu-miR-340-3p MIMAT0000586 Mus musculus miR-340-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>rno-miR-340-3p MIMAT0000585 Rattus norvegicus miR-340-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtctc 7
||||||
Sbjct: 3 cgtctc 8
>hsa-miR-139-3p MIMAT0004552 Homo sapiens miR-139-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtctc 7
||||||
Sbjct: 8 cgtctc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 55
Number of extensions: 48
Number of successful extensions: 43
Number of sequences better than 100.0: 43
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 43
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
