BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bhv1-miR-b4
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gma-miR4387c MIMAT0018254 Glycine max miR4387c 14 20
bhv1-miR-B4 MIMAT0013965 Bovine herpesvirus miR-B4 14 20
eca-miR-9106 MIMAT0034653 Equus caballus miR-9106 12 80
eca-miR-9068 MIMAT0034613 Equus caballus miR-9068 12 80
eca-miR-9037 MIMAT0034579 Equus caballus miR-9037 12 80
gra-miR7492k MIMAT0034128 Gossypium raimondii miR7492k 12 80
gra-miR7492j MIMAT0034127 Gossypium raimondii miR7492j 12 80
gra-miR7492i MIMAT0034126 Gossypium raimondii miR7492i 12 80
gra-miR7492h MIMAT0034125 Gossypium raimondii miR7492h 12 80
gra-miR7492g MIMAT0034124 Gossypium raimondii miR7492g 12 80
atr-miR8552d MIMAT0033870 Amborella trichopoda miR8552d 12 80
sma-miR-8426-3p MIMAT0033557 Schistosoma mansoni miR-8426-3p 12 80
ppc-miR-8364t-3p MIMAT0033285 Pristionchus pacificus miR-8364t-3p 12 80
mmu-miR-8102 MIMAT0031406 Mus musculus miR-8102 12 80
prd-miR-7940a-3p MIMAT0030739 Panagrellus redivivus miR-7940a-3p 12 80
prd-miR-7938-3p MIMAT0030735 Panagrellus redivivus miR-7938-3p 12 80
mtr-miR2653d MIMAT0029966 Medicago truncatula miR2653d 12 80
mmu-miR-6970-3p MIMAT0027843 Mus musculus miR-6970-3p 12 80
nta-miR479b MIMAT0024724 Nicotiana tabacum miR479b 12 80
nta-miR479a MIMAT0024723 Nicotiana tabacum miR479a 12 80
mtr-miR160f MIMAT0021268 Medicago truncatula miR160f 12 80
ame-miR-989 MIMAT0018511 Apis mellifera miR-989 12 80
hsa-miR-3186-3p MIMAT0015068 Homo sapiens miR-3186-3p 12 80
ghr-miR479 MIMAT0014338 Gossypium hirsutum miR479 12 80
bmo-miR-2843-2-3p MIMAT0015307 Bombyx mori miR-2843-2-3p 12 80
mtr-miR2653c MIMAT0013438 Medicago truncatula miR2653c 12 80
mtr-miR2653b MIMAT0013437 Medicago truncatula miR2653b 12 80
mtr-miR2653a MIMAT0013436 Medicago truncatula miR2653a 12 80
dme-miR-2279-3p MIMAT0011785 Drosophila melanogaster miR-2279-3p 12 80
dvi-miR-263a-3p MIMAT0032051 Drosophila virilis miR-263a-3p 12 80
mml-miR-592-3p MIMAT0026901 Macaca mulatta miR-592-3p 12 80
gga-miR-1434 MIMAT0007295 Gallus gallus miR-1434 12 80
oan-miR-1341 MIMAT0006872 Ornithorhynchus anatinus miR-1341 12 80
bmo-miR-263a-3p MIMAT0015230 Bombyx mori miR-263a-3p 12 80
mmu-miR-592-3p MIMAT0017234 Mus musculus miR-592-3p 12 80
dme-miR-263a-3p MIMAT0020799 Drosophila melanogaster miR-263a-3p 12 80
>gma-miR4387c MIMAT0018254 Glycine max miR4387c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgtgat 7
|||||||
Sbjct: 2 gcgtgat 8
>bhv1-miR-B4 MIMAT0013965 Bovine herpesvirus miR-B4
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgtgat 7
|||||||
Sbjct: 2 gcgtgat 8
>eca-miR-9106 MIMAT0034653 Equus caballus miR-9106
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgtga 6
||||||
Sbjct: 6 gcgtga 1
>eca-miR-9068 MIMAT0034613 Equus caballus miR-9068
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 3 cgtgat 8
>eca-miR-9037 MIMAT0034579 Equus caballus miR-9037
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgtga 6
||||||
Sbjct: 6 gcgtga 1
>gra-miR7492k MIMAT0034128 Gossypium raimondii miR7492k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>gra-miR7492j MIMAT0034127 Gossypium raimondii miR7492j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>gra-miR7492i MIMAT0034126 Gossypium raimondii miR7492i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>gra-miR7492h MIMAT0034125 Gossypium raimondii miR7492h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>gra-miR7492g MIMAT0034124 Gossypium raimondii miR7492g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>atr-miR8552d MIMAT0033870 Amborella trichopoda miR8552d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 3 cgtgat 8
>sma-miR-8426-3p MIMAT0033557 Schistosoma mansoni miR-8426-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 3 cgtgat 8
>ppc-miR-8364t-3p MIMAT0033285 Pristionchus pacificus
miR-8364t-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtgat 7
||||||
Sbjct: 8 cgtgat 3
>mmu-miR-8102 MIMAT0031406 Mus musculus miR-8102
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgtga 6
||||||
Sbjct: 6 gcgtga 1
>prd-miR-7940a-3p MIMAT0030739 Panagrellus redivivus
miR-7940a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgtga 6
||||||
Sbjct: 6 gcgtga 1
>prd-miR-7938-3p MIMAT0030735 Panagrellus redivivus miR-7938-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>mtr-miR2653d MIMAT0029966 Medicago truncatula miR2653d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgtga 6
||||||
Sbjct: 6 gcgtga 1
>mmu-miR-6970-3p MIMAT0027843 Mus musculus miR-6970-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgtga 6
||||||
Sbjct: 6 gcgtga 1
>nta-miR479b MIMAT0024724 Nicotiana tabacum miR479b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>nta-miR479a MIMAT0024723 Nicotiana tabacum miR479a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>mtr-miR160f MIMAT0021268 Medicago truncatula miR160f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgtga 6
||||||
Sbjct: 1 gcgtga 6
>ame-miR-989 MIMAT0018511 Apis mellifera miR-989
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>hsa-miR-3186-3p MIMAT0015068 Homo sapiens miR-3186-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgtga 6
||||||
Sbjct: 6 gcgtga 1
>ghr-miR479 MIMAT0014338 Gossypium hirsutum miR479
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>bmo-miR-2843-2-3p MIMAT0015307 Bombyx mori miR-2843-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 3 cgtgat 8
>mtr-miR2653c MIMAT0013438 Medicago truncatula miR2653c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgtga 6
||||||
Sbjct: 6 gcgtga 1
>mtr-miR2653b MIMAT0013437 Medicago truncatula miR2653b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgtga 6
||||||
Sbjct: 6 gcgtga 1
>mtr-miR2653a MIMAT0013436 Medicago truncatula miR2653a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgtga 6
||||||
Sbjct: 6 gcgtga 1
>dme-miR-2279-3p MIMAT0011785 Drosophila melanogaster
miR-2279-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgtga 6
||||||
Sbjct: 8 gcgtga 3
>dvi-miR-263a-3p MIMAT0032051 Drosophila virilis miR-263a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>mml-miR-592-3p MIMAT0026901 Macaca mulatta miR-592-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtgat 7
||||||
Sbjct: 8 cgtgat 3
>gga-miR-1434 MIMAT0007295 Gallus gallus miR-1434
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgtga 6
||||||
Sbjct: 3 gcgtga 8
>oan-miR-1341 MIMAT0006872 Ornithorhynchus anatinus miR-1341
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgtga 6
||||||
Sbjct: 3 gcgtga 8
>bmo-miR-263a-3p MIMAT0015230 Bombyx mori miR-263a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
>mmu-miR-592-3p MIMAT0017234 Mus musculus miR-592-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgtgat 7
||||||
Sbjct: 8 cgtgat 3
>dme-miR-263a-3p MIMAT0020799 Drosophila melanogaster
miR-263a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgtgat 7
||||||
Sbjct: 1 cgtgat 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 44
Number of extensions: 42
Number of successful extensions: 36
Number of sequences better than 100.0: 36
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 36
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
