BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-5-3p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gma-miR1532 MIMAT0007394 Glycine max miR1532                           14      20
ata-miR164c-3p MIMAT0037243 Aegilops tauschii miR164c-3p               12      80
oha-miR-124-5p MIMAT0036669 Ophiophagus hannah miR-124-5p              12      80
bra-miR164c-3p MIMAT0035869 Brassica rapa miR164c-3p                   12      80
bra-miR164d-3p MIMAT0035867 Brassica rapa miR164d-3p                   12      80
bra-miR164b-3p MIMAT0035865 Brassica rapa miR164b-3p                   12      80
sly-miR164b-3p MIMAT0033976 Solanum lycopersicum miR164b-3p            12      80
ppe-miR7122b-3p MIMAT0031530 Prunus persica miR7122b-3p                12      80
ppe-miR7122a-3p MIMAT0031528 Prunus persica miR7122a-3p                12      80
lja-miR7531 MIMAT0029354 Lotus japonicus miR7531                       12      80
pol-miR-124-5p MIMAT0025430 Paralichthys olivaceus miR-124-5p          12      80
ppe-miR398b MIMAT0027328 Prunus persica miR398b                        12      80
ola-miR-124-5p MIMAT0022689 Oryzias latipes miR-124-5p                 12      80
tur-miR-124-1-5p MIMAT0023088 Tetranychus urticae miR-124-1-5p         12      80
hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p        12      80
osa-miR5544 MIMAT0022180 Oryza sativa miR5544                          12      80
sbi-miR5387a MIMAT0021685 Sorghum bicolor miR5387a                     12      80
osa-miR812o-5p MIMAT0019681 Oryza sativa miR812o-5p                    12      80
pma-miR-124-5p MIMAT0019444 Petromyzon marinus miR-124-5p              12      80
cin-miR-4092-5p MIMAT0016670 Ciona intestinalis miR-4092-5p            12      80
aly-miR164c-3p MIMAT0017454 Arabidopsis lyrata miR164c-3p              12      80
bmo-miR-3406-3p MIMAT0015612 Bombyx mori miR-3406-3p                   12      80
tgu-miR-124-5p MIMAT0014630 Taeniopygia guttata miR-124-5p             12      80
aae-miR-263a-3p MIMAT0015372 Aedes aegypti miR-263a-3p                 12      80
mtr-miR2631 MIMAT0013395 Medicago truncatula miR2631                   12      80
dme-miR-2496-5p MIMAT0012206 Drosophila melanogaster miR-2496-5p       12      80
tca-miR-275-5p MIMAT0019123 Tribolium castaneum miR-275-5p             12      80
cin-miR-124-2-5p MIMAT0015257 Ciona intestinalis miR-124-2-5p          12      80
oan-miR-124a-5p MIMAT0007113 Ornithorhynchus anatinus miR-124a-5p      12      80
mmu-miR-696 MIMAT0003483 Mus musculus miR-696                          12      80
dre-miR-124-6-5p MIMAT0031962 Danio rerio miR-124-6-5p                 12      80
dre-miR-124-5p MIMAT0031960 Danio rerio miR-124-5p                     12      80
zma-miR164a-3p MIMAT0015136 Zea mays miR164a-3p                        12      80
ath-miR164c-3p MIMAT0031916 Arabidopsis thaliana miR164c-3p            12      80
rno-miR-124-5p MIMAT0004728 Rattus norvegicus miR-124-5p               12      80
hsa-miR-124-5p MIMAT0004591 Homo sapiens miR-124-5p                    12      80
mmu-miR-124-5p MIMAT0004527 Mus musculus miR-124-5p                    12      80
>gma-miR1532 MIMAT0007394 Glycine max miR1532
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcgtgtt 7
         |||||||
Sbjct: 7 gcgtgtt 1
>ata-miR164c-3p MIMAT0037243 Aegilops tauschii miR164c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 3 cgtgtt 8
>oha-miR-124-5p MIMAT0036669 Ophiophagus hannah miR-124-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>bra-miR164c-3p MIMAT0035869 Brassica rapa miR164c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 3 cgtgtt 8
>bra-miR164d-3p MIMAT0035867 Brassica rapa miR164d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 3 cgtgtt 8
>bra-miR164b-3p MIMAT0035865 Brassica rapa miR164b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 3 cgtgtt 8
>sly-miR164b-3p MIMAT0033976 Solanum lycopersicum miR164b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 3 cgtgtt 8
>ppe-miR7122b-3p MIMAT0031530 Prunus persica miR7122b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 2 cgtgtt 7
>ppe-miR7122a-3p MIMAT0031528 Prunus persica miR7122a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 3 cgtgtt 8
>lja-miR7531 MIMAT0029354 Lotus japonicus miR7531
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>pol-miR-124-5p MIMAT0025430 Paralichthys olivaceus miR-124-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>ppe-miR398b MIMAT0027328 Prunus persica miR398b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>ola-miR-124-5p MIMAT0022689 Oryzias latipes miR-124-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>tur-miR-124-1-5p MIMAT0023088 Tetranychus urticae miR-124-1-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 3 cgtgtt 8
>osa-miR5544 MIMAT0022180 Oryza sativa miR5544
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 8 cgtgtt 3
>sbi-miR5387a MIMAT0021685 Sorghum bicolor miR5387a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 7 cgtgtt 2
>osa-miR812o-5p MIMAT0019681 Oryza sativa miR812o-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>pma-miR-124-5p MIMAT0019444 Petromyzon marinus miR-124-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>cin-miR-4092-5p MIMAT0016670 Ciona intestinalis miR-4092-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>aly-miR164c-3p MIMAT0017454 Arabidopsis lyrata miR164c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 3 cgtgtt 8
>bmo-miR-3406-3p MIMAT0015612 Bombyx mori miR-3406-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcgtgt 6
         ||||||
Sbjct: 3 gcgtgt 8
>tgu-miR-124-5p MIMAT0014630 Taeniopygia guttata miR-124-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>aae-miR-263a-3p MIMAT0015372 Aedes aegypti miR-263a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>mtr-miR2631 MIMAT0013395 Medicago truncatula miR2631
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcgtgt 6
         ||||||
Sbjct: 8 gcgtgt 3
>dme-miR-2496-5p MIMAT0012206 Drosophila melanogaster
         miR-2496-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcgtgt 6
         ||||||
Sbjct: 3 gcgtgt 8
>tca-miR-275-5p MIMAT0019123 Tribolium castaneum miR-275-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>cin-miR-124-2-5p MIMAT0015257 Ciona intestinalis miR-124-2-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>oan-miR-124a-5p MIMAT0007113 Ornithorhynchus anatinus
         miR-124a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>mmu-miR-696 MIMAT0003483 Mus musculus miR-696
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcgtgt 6
         ||||||
Sbjct: 1 gcgtgt 6
>dre-miR-124-6-5p MIMAT0031962 Danio rerio miR-124-6-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>dre-miR-124-5p MIMAT0031960 Danio rerio miR-124-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>zma-miR164a-3p MIMAT0015136 Zea mays miR164a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 3 cgtgtt 8
>ath-miR164c-3p MIMAT0031916 Arabidopsis thaliana miR164c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 3 cgtgtt 8
>rno-miR-124-5p MIMAT0004728 Rattus norvegicus miR-124-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>hsa-miR-124-5p MIMAT0004591 Homo sapiens miR-124-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
>mmu-miR-124-5p MIMAT0004527 Mus musculus miR-124-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgtgtt 7
         ||||||
Sbjct: 1 cgtgtt 6
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 40
Number of extensions: 39
Number of successful extensions: 37
Number of sequences better than 100.0: 37
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 37
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)