BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m10-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv1-miR-M10-5p MIMAT0007294 Mareks disease miR-M10-5p 16 6.9
atr-miR535 MIMAT0033947 Amborella trichopoda miR535 14 27
ssa-miR-21a-3p MIMAT0032534 Salmo salar miR-21a-3p 14 27
cpa-miR535 MIMAT0031824 Carica papaya miR535 14 27
ppe-miR535a MIMAT0031514 Prunus persica miR535a 14 27
mes-miR535b MIMAT0029301 Manihot esculenta miR535b 14 27
mes-miR535a MIMAT0029300 Manihot esculenta miR535a 14 27
mdm-miR535a MIMAT0026024 Malus domestica miR535a 14 27
aca-miR-5410-5p MIMAT0022027 Anolis carolinensis miR-5410-5p 14 27
tcc-miR535 MIMAT0020448 Theobroma cacao miR535 14 27
pab-miR535 MIMAT0018159 Picea abies miR535 14 27
rco-miR535 MIMAT0014205 Ricinus communis miR535 14 27
aqc-miR535 MIMAT0012594 Aquilegia caerulea miR535 14 27
gga-miR-1772-3p MIMAT0007682 Gallus gallus miR-1772-3p 14 27
vvi-miR535c MIMAT0005738 Vitis vinifera miR535c 14 27
vvi-miR535b MIMAT0005736 Vitis vinifera miR535b 14 27
vvi-miR535a MIMAT0005735 Vitis vinifera miR535a 14 27
ppt-miR535d MIMAT0003915 Physcomitrella patens miR535d 14 27
osa-miR535-5p MIMAT0003142 Oryza sativa miR535-5p 14 27
ppt-miR535c MIMAT0003141 Physcomitrella patens miR535c 14 27
ppt-miR535b MIMAT0003140 Physcomitrella patens miR535b 14 27
ppt-miR535a MIMAT0003139 Physcomitrella patens miR535a 14 27
>mdv1-miR-M10-5p MIMAT0007294 Mareks disease miR-M10-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcgttgtc 8
||||||||
Sbjct: 1 gcgttgtc 8
>atr-miR535 MIMAT0033947 Amborella trichopoda miR535
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>ssa-miR-21a-3p MIMAT0032534 Salmo salar miR-21a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>cpa-miR535 MIMAT0031824 Carica papaya miR535
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>ppe-miR535a MIMAT0031514 Prunus persica miR535a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>mes-miR535b MIMAT0029301 Manihot esculenta miR535b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>mes-miR535a MIMAT0029300 Manihot esculenta miR535a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>mdm-miR535a MIMAT0026024 Malus domestica miR535a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>aca-miR-5410-5p MIMAT0022027 Anolis carolinensis miR-5410-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgttgtc 8
|||||||
Sbjct: 1 cgttgtc 7
>tcc-miR535 MIMAT0020448 Theobroma cacao miR535
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>pab-miR535 MIMAT0018159 Picea abies miR535
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>rco-miR535 MIMAT0014205 Ricinus communis miR535
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>aqc-miR535 MIMAT0012594 Aquilegia caerulea miR535
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>gga-miR-1772-3p MIMAT0007682 Gallus gallus miR-1772-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgttgtc 8
|||||||
Sbjct: 2 cgttgtc 8
>vvi-miR535c MIMAT0005738 Vitis vinifera miR535c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>vvi-miR535b MIMAT0005736 Vitis vinifera miR535b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>vvi-miR535a MIMAT0005735 Vitis vinifera miR535a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>ppt-miR535d MIMAT0003915 Physcomitrella patens miR535d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>osa-miR535-5p MIMAT0003142 Oryza sativa miR535-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>ppt-miR535c MIMAT0003141 Physcomitrella patens miR535c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>ppt-miR535b MIMAT0003140 Physcomitrella patens miR535b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
>ppt-miR535a MIMAT0003139 Physcomitrella patens miR535a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgttgtc 8
|||||||
Sbjct: 8 cgttgtc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 142
Number of extensions: 119
Number of successful extensions: 104
Number of sequences better than 100.0: 22
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
