BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-15
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mghv-miR-M1-15 MIMAT0018176 Mouse gammaherpesvirus miR-M1-15 14 20
ssc-miR-9823-5p MIMAT0037041 Sus scrofa miR-9823-5p 12 80
dvi-miR-993-5p MIMAT0035604 Drosophila virilis miR-993-5p 12 80
eca-miR-8908j MIMAT0034711 Equus caballus miR-8908j 12 80
ppc-miR-8221-5p MIMAT0032876 Pristionchus pacificus miR-8221-5p 12 80
hsa-miR-7848-3p MIMAT0030423 Homo sapiens miR-7848-3p 12 80
mmu-miR-7237-5p MIMAT0028442 Mus musculus miR-7237-5p 12 80
mmu-miR-7224-5p MIMAT0028416 Mus musculus miR-7224-5p 12 80
hsa-miR-6798-3p MIMAT0027497 Homo sapiens miR-6798-3p 12 80
hsa-miR-6755-5p MIMAT0027410 Homo sapiens miR-6755-5p 12 80
tgu-miR-1759 MIMAT0025405 Taeniopygia guttata miR-1759 12 80
mja-miR-6491 MIMAT0025299 Marsupenaeus japonicus miR-6491 12 80
ptr-miR-3132 MIMAT0024058 Pan troglodytes miR-3132 12 80
sly-miR6027-5p MIMAT0032133 Solanum lycopersicum miR6027-5p 12 80
hco-miR-5890f-3p MIMAT0023410 Haemonchus contortus miR-5890f-3p 12 80
hco-miR-5890d MIMAT0023393 Haemonchus contortus miR-5890d 12 80
cel-miR-4937 MIMAT0020143 Caenorhabditis elegans miR-4937 12 80
ame-miR-3769 MIMAT0018543 Apis mellifera miR-3769 12 80
cin-miR-4069-5p MIMAT0016626 Ciona intestinalis miR-4069-5p 12 80
cin-miR-4011b-3p MIMAT0016511 Ciona intestinalis miR-4011b-3p 12 80
hsa-miR-3132 MIMAT0014997 Homo sapiens miR-3132 12 80
dsi-miR-993-5p MIMAT0012461 Drosophila simulans miR-993-5p 12 80
dsi-miR-1012-5p MIMAT0012425 Drosophila simulans miR-1012-5p 12 80
dps-miR-993-5p MIMAT0012263 Drosophila pseudoobscura miR-993-5p 12 80
aqu-miR-2020-5p MIMAT0009698 Amphimedon queenslandica miR-2020-5p 12 80
gga-miR-1759-5p MIMAT0007666 Gallus gallus miR-1759-5p 12 80
gga-miR-1598 MIMAT0007464 Gallus gallus miR-1598 12 80
hsa-miR-1229-5p MIMAT0022942 Homo sapiens miR-1229-5p 12 80
cre-miR1144b MIMAT0005435 Chlamydomonas reinhardtii miR1144b 12 80
dme-miR-1012-5p MIMAT0020906 Drosophila melanogaster miR-1012-5p 12 80
>mghv-miR-M1-15 MIMAT0018176 Mouse gammaherpesvirus miR-M1-15
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctaccc 7
|||||||
Sbjct: 2 gctaccc 8
>ssc-miR-9823-5p MIMAT0037041 Sus scrofa miR-9823-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctacc 6
||||||
Sbjct: 1 gctacc 6
>dvi-miR-993-5p MIMAT0035604 Drosophila virilis miR-993-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctaccc 7
||||||
Sbjct: 1 ctaccc 6
>eca-miR-8908j MIMAT0034711 Equus caballus miR-8908j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctaccc 7
||||||
Sbjct: 1 ctaccc 6
>ppc-miR-8221-5p MIMAT0032876 Pristionchus pacificus miR-8221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 8 ctaccc 3
>hsa-miR-7848-3p MIMAT0030423 Homo sapiens miR-7848-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctaccc 7
||||||
Sbjct: 1 ctaccc 6
>mmu-miR-7237-5p MIMAT0028442 Mus musculus miR-7237-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctacc 6
||||||
Sbjct: 8 gctacc 3
>mmu-miR-7224-5p MIMAT0028416 Mus musculus miR-7224-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 6 ctaccc 1
>hsa-miR-6798-3p MIMAT0027497 Homo sapiens miR-6798-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctaccc 7
||||||
Sbjct: 1 ctaccc 6
>hsa-miR-6755-5p MIMAT0027410 Homo sapiens miR-6755-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 8 ctaccc 3
>tgu-miR-1759 MIMAT0025405 Taeniopygia guttata miR-1759
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 8 ctaccc 3
>mja-miR-6491 MIMAT0025299 Marsupenaeus japonicus miR-6491
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctacc 6
||||||
Sbjct: 8 gctacc 3
>ptr-miR-3132 MIMAT0024058 Pan troglodytes miR-3132
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 7 ctaccc 2
>sly-miR6027-5p MIMAT0032133 Solanum lycopersicum miR6027-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 8 ctaccc 3
>hco-miR-5890f-3p MIMAT0023410 Haemonchus contortus miR-5890f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctaccc 7
||||||
Sbjct: 1 ctaccc 6
>hco-miR-5890d MIMAT0023393 Haemonchus contortus miR-5890d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctaccc 7
||||||
Sbjct: 1 ctaccc 6
>cel-miR-4937 MIMAT0020143 Caenorhabditis elegans miR-4937
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 8 ctaccc 3
>ame-miR-3769 MIMAT0018543 Apis mellifera miR-3769
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctacc 6
||||||
Sbjct: 6 gctacc 1
>cin-miR-4069-5p MIMAT0016626 Ciona intestinalis miR-4069-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctaccc 7
||||||
Sbjct: 1 ctaccc 6
>cin-miR-4011b-3p MIMAT0016511 Ciona intestinalis miR-4011b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctacc 6
||||||
Sbjct: 8 gctacc 3
>hsa-miR-3132 MIMAT0014997 Homo sapiens miR-3132
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 7 ctaccc 2
>dsi-miR-993-5p MIMAT0012461 Drosophila simulans miR-993-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctaccc 7
||||||
Sbjct: 1 ctaccc 6
>dsi-miR-1012-5p MIMAT0012425 Drosophila simulans miR-1012-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 8 ctaccc 3
>dps-miR-993-5p MIMAT0012263 Drosophila pseudoobscura miR-993-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctaccc 7
||||||
Sbjct: 1 ctaccc 6
>aqu-miR-2020-5p MIMAT0009698 Amphimedon queenslandica
miR-2020-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 7 ctaccc 2
>gga-miR-1759-5p MIMAT0007666 Gallus gallus miR-1759-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 8 ctaccc 3
>gga-miR-1598 MIMAT0007464 Gallus gallus miR-1598
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctacc 6
||||||
Sbjct: 8 gctacc 3
>hsa-miR-1229-5p MIMAT0022942 Homo sapiens miR-1229-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 8 ctaccc 3
>cre-miR1144b MIMAT0005435 Chlamydomonas reinhardtii miR1144b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 7 ctaccc 2
>dme-miR-1012-5p MIMAT0020906 Drosophila melanogaster
miR-1012-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctaccc 7
||||||
Sbjct: 7 ctaccc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 39
Number of extensions: 38
Number of successful extensions: 30
Number of sequences better than 100.0: 30
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 30
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
