BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m107-1-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nve-miR-9458 MIMAT0035419 Nematostella vectensis miR-9458 14 20
sbi-miR5564c-3p MIMAT0026391 Sorghum bicolor miR5564c-3p 14 20
pma-miR-4573 MIMAT0019606 Petromyzon marinus miR-4573 14 20
mcmv-miR-m107-1-3p MIMAT0005556 Mouse cytomegalovirus miR-m107-1-3p 14 20
tae-miR9660-5p MIMAT0035768 Triticum aestivum miR9660-5p 12 80
dvi-miR-974-2-5p MIMAT0035645 Drosophila virilis miR-974-2-5p 12 80
dvi-miR-974-1-5p MIMAT0035644 Drosophila virilis miR-974-1-5p 12 80
gsa-miR-9394b-3p MIMAT0035349 Gyrodactylus salaris miR-9394b-3p 12 80
sma-miR-8425-5p MIMAT0033554 Schistosoma mansoni miR-8425-5p 12 80
mdo-miR-7376-3p MIMAT0028809 Monodelphis domestica miR-7376-3p 12 80
pma-miR-4565 MIMAT0019597 Petromyzon marinus miR-4565 12 80
gma-miR4364a MIMAT0018260 Glycine max miR4364a 12 80
cin-miR-4018a-3p MIMAT0016529 Ciona intestinalis miR-4018a-3p 12 80
tae-miR1129 MIMAT0005364 Triticum aestivum miR1129 12 80
dme-miR-974-5p MIMAT0005490 Drosophila melanogaster miR-974-5p 12 80
mml-miR-99a-3p MIMAT0026579 Macaca mulatta miR-99a-3p 12 80
zma-miR156k-3p MIMAT0015208 Zea mays miR156k-3p 12 80
osa-miR156j-3p MIMAT0022850 Oryza sativa miR156j-3p 12 80
>nve-miR-9458 MIMAT0035419 Nematostella vectensis miR-9458
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gctcgcg 7
|||||||
Sbjct: 8 gctcgcg 2
>sbi-miR5564c-3p MIMAT0026391 Sorghum bicolor miR5564c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gctcgcg 7
|||||||
Sbjct: 8 gctcgcg 2
>pma-miR-4573 MIMAT0019606 Petromyzon marinus miR-4573
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctcgcg 7
|||||||
Sbjct: 1 gctcgcg 7
>mcmv-miR-m107-1-3p MIMAT0005556 Mouse cytomegalovirus
miR-m107-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctcgcg 7
|||||||
Sbjct: 2 gctcgcg 8
>tae-miR9660-5p MIMAT0035768 Triticum aestivum miR9660-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctcgc 6
||||||
Sbjct: 8 gctcgc 3
>dvi-miR-974-2-5p MIMAT0035645 Drosophila virilis miR-974-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctcgc 6
||||||
Sbjct: 8 gctcgc 3
>dvi-miR-974-1-5p MIMAT0035644 Drosophila virilis miR-974-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctcgc 6
||||||
Sbjct: 8 gctcgc 3
>gsa-miR-9394b-3p MIMAT0035349 Gyrodactylus salaris miR-9394b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgcg 7
||||||
Sbjct: 7 ctcgcg 2
>sma-miR-8425-5p MIMAT0033554 Schistosoma mansoni miR-8425-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgcg 7
||||||
Sbjct: 8 ctcgcg 3
>mdo-miR-7376-3p MIMAT0028809 Monodelphis domestica miR-7376-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctcgc 6
||||||
Sbjct: 3 gctcgc 8
>pma-miR-4565 MIMAT0019597 Petromyzon marinus miR-4565
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctcgc 6
||||||
Sbjct: 8 gctcgc 3
>gma-miR4364a MIMAT0018260 Glycine max miR4364a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgcg 7
||||||
Sbjct: 6 ctcgcg 1
>cin-miR-4018a-3p MIMAT0016529 Ciona intestinalis miR-4018a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctcgc 6
||||||
Sbjct: 1 gctcgc 6
>tae-miR1129 MIMAT0005364 Triticum aestivum miR1129
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctcgc 6
||||||
Sbjct: 8 gctcgc 3
>dme-miR-974-5p MIMAT0005490 Drosophila melanogaster miR-974-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctcgc 6
||||||
Sbjct: 8 gctcgc 3
>mml-miR-99a-3p MIMAT0026579 Macaca mulatta miR-99a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctcgc 6
||||||
Sbjct: 3 gctcgc 8
>zma-miR156k-3p MIMAT0015208 Zea mays miR156k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctcgc 6
||||||
Sbjct: 1 gctcgc 6
>osa-miR156j-3p MIMAT0022850 Oryza sativa miR156j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctcgc 6
||||||
Sbjct: 1 gctcgc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 32
Number of extensions: 28
Number of successful extensions: 18
Number of sequences better than 100.0: 18
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 18
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
