BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-orilyt-2
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nve-miR-9458 MIMAT0035419 Nematostella vectensis miR-9458 16 6.9
sbi-miR5564c-3p MIMAT0026391 Sorghum bicolor miR5564c-3p 16 6.9
pma-miR-4573 MIMAT0019606 Petromyzon marinus miR-4573 16 6.9
sma-miR-8425-5p MIMAT0033554 Schistosoma mansoni miR-8425-5p 14 27
mcmv-miR-m107-1-3p MIMAT0005556 Mouse cytomegalovirus miR-m107-1-3p 14 27
>nve-miR-9458 MIMAT0035419 Nematostella vectensis miR-9458
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gctcgcgt 8
||||||||
Sbjct: 8 gctcgcgt 1
>sbi-miR5564c-3p MIMAT0026391 Sorghum bicolor miR5564c-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gctcgcgt 8
||||||||
Sbjct: 8 gctcgcgt 1
>pma-miR-4573 MIMAT0019606 Petromyzon marinus miR-4573
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gctcgcgt 8
||||||||
Sbjct: 1 gctcgcgt 8
>sma-miR-8425-5p MIMAT0033554 Schistosoma mansoni miR-8425-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctcgcgt 8
|||||||
Sbjct: 8 ctcgcgt 2
>mcmv-miR-m107-1-3p MIMAT0005556 Mouse cytomegalovirus
miR-m107-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctcgcg 7
|||||||
Sbjct: 2 gctcgcg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 44
Number of extensions: 36
Number of successful extensions: 24
Number of sequences better than 100.0: 5
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 5
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
