BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s52
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bbe-miR-4888-5p MIMAT0031705 Branchiostoma belcheri miR-4888-5p 16 6.9
bfl-miR-4888 MIMAT0020475 Branchiostoma floridae miR-4888 16 6.9
efu-miR-9319 MIMAT0035009 Eptesicus fuscus miR-9319 14 27
mmu-miR-7052-3p MIMAT0028009 Mus musculus miR-7052-3p 14 27
gma-miR4340 MIMAT0018228 Glycine max miR4340 14 27
hsa-miR-3678-3p MIMAT0018103 Homo sapiens miR-3678-3p 14 27
gga-miR-3530-5p MIMAT0027029 Gallus gallus miR-3530-5p 14 27
hsa-miR-3194-3p MIMAT0019218 Homo sapiens miR-3194-3p 14 27
aqc-miR408 MIMAT0012581 Aquilegia caerulea miR408 14 27
bta-miR-2347 MIMAT0011882 Bos taurus miR-2347 14 27
gga-miR-1745 MIMAT0007650 Gallus gallus miR-1745 14 27
gga-miR-1684a-5p MIMAT0007571 Gallus gallus miR-1684a-5p 14 27
gga-miR-757 MIMAT0003779 Gallus gallus miR-757 14 27
>bbe-miR-4888-5p MIMAT0031705 Branchiostoma belcheri miR-4888-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gctctgca 8
||||||||
Sbjct: 8 gctctgca 1
>bfl-miR-4888 MIMAT0020475 Branchiostoma floridae miR-4888
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gctctgca 8
||||||||
Sbjct: 8 gctctgca 1
>efu-miR-9319 MIMAT0035009 Eptesicus fuscus miR-9319
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gctctgc 7
|||||||
Sbjct: 8 gctctgc 2
>mmu-miR-7052-3p MIMAT0028009 Mus musculus miR-7052-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctctgc 7
|||||||
Sbjct: 1 gctctgc 7
>gma-miR4340 MIMAT0018228 Glycine max miR4340
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctctgca 8
|||||||
Sbjct: 7 ctctgca 1
>hsa-miR-3678-3p MIMAT0018103 Homo sapiens miR-3678-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctctgca 8
|||||||
Sbjct: 8 ctctgca 2
>gga-miR-3530-5p MIMAT0027029 Gallus gallus miR-3530-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctctgc 7
|||||||
Sbjct: 1 gctctgc 7
>hsa-miR-3194-3p MIMAT0019218 Homo sapiens miR-3194-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctctgc 7
|||||||
Sbjct: 2 gctctgc 8
>aqc-miR408 MIMAT0012581 Aquilegia caerulea miR408
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctctgc 7
|||||||
Sbjct: 2 gctctgc 8
>bta-miR-2347 MIMAT0011882 Bos taurus miR-2347
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctctgca 8
|||||||
Sbjct: 7 ctctgca 1
>gga-miR-1745 MIMAT0007650 Gallus gallus miR-1745
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctctgc 7
|||||||
Sbjct: 2 gctctgc 8
>gga-miR-1684a-5p MIMAT0007571 Gallus gallus miR-1684a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctctgc 7
|||||||
Sbjct: 2 gctctgc 8
>gga-miR-757 MIMAT0003779 Gallus gallus miR-757
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gctctgc 7
|||||||
Sbjct: 7 gctctgc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 208
Number of extensions: 193
Number of successful extensions: 160
Number of sequences better than 100.0: 13
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
