BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-30c-1-3p MIMAT0036894 Ophiophagus hannah miR-30c-1-3p 14 27
oha-miR-30c-2-3p MIMAT0036893 Ophiophagus hannah miR-30c-2-3p 14 27
oha-miR-204-1-3p MIMAT0036813 Ophiophagus hannah miR-204-1-3p 14 27
chi-miR-30f-3p MIMAT0036131 Capra hircus miR-30f-3p 14 27
chi-miR-30c-3p MIMAT0036126 Capra hircus miR-30c-3p 14 27
chi-miR-30b-3p MIMAT0036124 Capra hircus miR-30b-3p 14 27
chi-miR-204-3p MIMAT0036051 Capra hircus miR-204-3p 14 27
efu-miR-30c MIMAT0035135 Eptesicus fuscus miR-30c 14 27
efu-miR-204 MIMAT0035089 Eptesicus fuscus miR-204 14 27
pxy-miR-8536a MIMAT0033816 Plutella xylostella miR-8536a 14 27
ssa-miR-30e-3p MIMAT0032612 Salmo salar miR-30e-3p 14 27
ssa-miR-30a-4-3p MIMAT0032602 Salmo salar miR-30a-4-3p 14 27
ssa-miR-30a-3-3p MIMAT0032601 Salmo salar miR-30a-3-3p 14 27
hsa-miR-7977 MIMAT0031180 Homo sapiens miR-7977 14 27
hsa-miR-1273h-5p MIMAT0030415 Homo sapiens miR-1273h-5p 14 27
mdo-miR-30b-3p MIMAT0028551 Monodelphis domestica miR-30b-3p 14 27
ssc-miR-7138-5p MIMAT0028151 Sus scrofa miR-7138-5p 14 27
mmu-miR-7035-5p MIMAT0027974 Mus musculus miR-7035-5p 14 27
mmu-miR-6995-5p MIMAT0027892 Mus musculus miR-6995-5p 14 27
hsa-miR-6788-5p MIMAT0027476 Homo sapiens miR-6788-5p 14 27
hsa-miR-6779-5p MIMAT0027458 Homo sapiens miR-6779-5p 14 27
gga-miR-6593-5p MIMAT0025686 Gallus gallus miR-6593-5p 14 27
ptr-miR-3192 MIMAT0024042 Pan troglodytes miR-3192 14 27
sha-miR-204 MIMAT0022790 Sarcophilus harrisii miR-204 14 27
aca-miR-30c-3p MIMAT0021925 Anolis carolinensis miR-30c-3p 14 27
aca-miR-30b-3p MIMAT0021923 Anolis carolinensis miR-30b-3p 14 27
aca-miR-204a-3p MIMAT0021854 Anolis carolinensis miR-204a-3p 14 27
dme-miR-4970-5p MIMAT0020197 Drosophila melanogaster miR-4970-5p 14 27
hsa-miR-3689c MIMAT0019007 Homo sapiens miR-3689c 14 27
ssc-miR-30c-1-3p MIMAT0022976 Sus scrofa miR-30c-1-3p 14 27
hsa-miR-3689b-3p MIMAT0018181 Homo sapiens miR-3689b-3p 14 27
hsa-miR-3689a-3p MIMAT0018118 Homo sapiens miR-3689a-3p 14 27
esi-miR3454e-5p MIMAT0017769 Ectocarpus siliculosus miR3454e-5p 14 27
esi-miR3454b-5p MIMAT0017759 Ectocarpus siliculosus miR3454b-5p 14 27
esi-miR3454c-5p MIMAT0017751 Ectocarpus siliculosus miR3454c-5p 14 27
esi-miR3454a-5p MIMAT0017747 Ectocarpus siliculosus miR3454a-5p 14 27
hsa-miR-3192-5p MIMAT0015076 Homo sapiens miR-3192-5p 14 27
tgu-miR-30c-3p MIMAT0014686 Taeniopygia guttata miR-30c-3p 14 27
ssc-miR-30b-3p MIMAT0015269 Sus scrofa miR-30b-3p 14 27
mml-miR-204-3p MIMAT0026843 Macaca mulatta miR-204-3p 14 27
oan-miR-30b-3p MIMAT0007044 Ornithorhynchus anatinus miR-30b-3p 14 27
oan-miR-30c-2-3p MIMAT0006912 Ornithorhynchus anatinus miR-30c-2-3p 14 27
ath-miR832-5p MIMAT0004250 Arabidopsis thaliana miR832-5p 14 27
sme-miR-749 MIMAT0004016 Schmidtea mediterranea miR-749 14 27
bta-miR-30b-3p MIMAT0012534 Bos taurus miR-30b-3p 14 27
hsa-miR-619-5p MIMAT0026622 Homo sapiens miR-619-5p 14 27
mml-miR-30b-3p MIMAT0026563 Macaca mulatta miR-30b-3p 14 27
ssc-miR-30c-3p MIMAT0022922 Sus scrofa miR-30c-3p 14 27
dre-miR-204-2-3p MIMAT0031987 Danio rerio miR-204-2-3p 14 27
dre-miR-204-3p MIMAT0031924 Danio rerio miR-204-3p 14 27
rno-miR-204-3p MIMAT0004739 Rattus norvegicus miR-204-3p 14 27
rno-miR-30c-2-3p MIMAT0005442 Rattus norvegicus miR-30c-2-3p 14 27
rno-miR-30c-1-3p MIMAT0004719 Rattus norvegicus miR-30c-1-3p 14 27
hsa-miR-30c-1-3p MIMAT0004674 Homo sapiens miR-30c-1-3p 14 27
mmu-miR-30c-2-3p MIMAT0005438 Mus musculus miR-30c-2-3p 14 27
mmu-miR-30c-1-3p MIMAT0004616 Mus musculus miR-30c-1-3p 14 27
hsa-miR-30b-3p MIMAT0004589 Homo sapiens miR-30b-3p 14 27
hsa-miR-204-3p MIMAT0022693 Homo sapiens miR-204-3p 14 27
hsa-miR-30c-2-3p MIMAT0004550 Homo sapiens miR-30c-2-3p 14 27
mmu-miR-204-3p MIMAT0017002 Mus musculus miR-204-3p 14 27
>oha-miR-30c-1-3p MIMAT0036894 Ophiophagus hannah miR-30c-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>oha-miR-30c-2-3p MIMAT0036893 Ophiophagus hannah miR-30c-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 2 gctggga 8
>oha-miR-204-1-3p MIMAT0036813 Ophiophagus hannah miR-204-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 1 gctggga 7
>chi-miR-30f-3p MIMAT0036131 Capra hircus miR-30f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>chi-miR-30c-3p MIMAT0036126 Capra hircus miR-30c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>chi-miR-30b-3p MIMAT0036124 Capra hircus miR-30b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>chi-miR-204-3p MIMAT0036051 Capra hircus miR-204-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 1 gctggga 7
>efu-miR-30c MIMAT0035135 Eptesicus fuscus miR-30c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>efu-miR-204 MIMAT0035089 Eptesicus fuscus miR-204
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 2 gctggga 8
>pxy-miR-8536a MIMAT0033816 Plutella xylostella miR-8536a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gctggga 7
|||||||
Sbjct: 8 gctggga 2
>ssa-miR-30e-3p MIMAT0032612 Salmo salar miR-30e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>ssa-miR-30a-4-3p MIMAT0032602 Salmo salar miR-30a-4-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>ssa-miR-30a-3-3p MIMAT0032601 Salmo salar miR-30a-3-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>hsa-miR-7977 MIMAT0031180 Homo sapiens miR-7977
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gctggga 7
|||||||
Sbjct: 8 gctggga 2
>hsa-miR-1273h-5p MIMAT0030415 Homo sapiens miR-1273h-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>mdo-miR-30b-3p MIMAT0028551 Monodelphis domestica miR-30b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>ssc-miR-7138-5p MIMAT0028151 Sus scrofa miR-7138-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gctggga 7
|||||||
Sbjct: 7 gctggga 1
>mmu-miR-7035-5p MIMAT0027974 Mus musculus miR-7035-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 2 gctggga 8
>mmu-miR-6995-5p MIMAT0027892 Mus musculus miR-6995-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>hsa-miR-6788-5p MIMAT0027476 Homo sapiens miR-6788-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>hsa-miR-6779-5p MIMAT0027458 Homo sapiens miR-6779-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>gga-miR-6593-5p MIMAT0025686 Gallus gallus miR-6593-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 2 gctggga 8
>ptr-miR-3192 MIMAT0024042 Pan troglodytes miR-3192
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 2 ctgggag 8
>sha-miR-204 MIMAT0022790 Sarcophilus harrisii miR-204
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 1 gctggga 7
>aca-miR-30c-3p MIMAT0021925 Anolis carolinensis miR-30c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>aca-miR-30b-3p MIMAT0021923 Anolis carolinensis miR-30b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>aca-miR-204a-3p MIMAT0021854 Anolis carolinensis miR-204a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 1 gctggga 7
>dme-miR-4970-5p MIMAT0020197 Drosophila melanogaster
miR-4970-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>hsa-miR-3689c MIMAT0019007 Homo sapiens miR-3689c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>ssc-miR-30c-1-3p MIMAT0022976 Sus scrofa miR-30c-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>hsa-miR-3689b-3p MIMAT0018181 Homo sapiens miR-3689b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>hsa-miR-3689a-3p MIMAT0018118 Homo sapiens miR-3689a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>esi-miR3454e-5p MIMAT0017769 Ectocarpus siliculosus miR3454e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gctggga 7
|||||||
Sbjct: 8 gctggga 2
>esi-miR3454b-5p MIMAT0017759 Ectocarpus siliculosus miR3454b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gctggga 7
|||||||
Sbjct: 8 gctggga 2
>esi-miR3454c-5p MIMAT0017751 Ectocarpus siliculosus miR3454c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gctggga 7
|||||||
Sbjct: 8 gctggga 2
>esi-miR3454a-5p MIMAT0017747 Ectocarpus siliculosus miR3454a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gctggga 7
|||||||
Sbjct: 8 gctggga 2
>hsa-miR-3192-5p MIMAT0015076 Homo sapiens miR-3192-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 2 ctgggag 8
>tgu-miR-30c-3p MIMAT0014686 Taeniopygia guttata miR-30c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>ssc-miR-30b-3p MIMAT0015269 Sus scrofa miR-30b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>mml-miR-204-3p MIMAT0026843 Macaca mulatta miR-204-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 2 gctggga 8
>oan-miR-30b-3p MIMAT0007044 Ornithorhynchus anatinus miR-30b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>oan-miR-30c-2-3p MIMAT0006912 Ornithorhynchus anatinus
miR-30c-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>ath-miR832-5p MIMAT0004250 Arabidopsis thaliana miR832-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 2 gctggga 8
>sme-miR-749 MIMAT0004016 Schmidtea mediterranea miR-749
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 1 gctggga 7
>bta-miR-30b-3p MIMAT0012534 Bos taurus miR-30b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>hsa-miR-619-5p MIMAT0026622 Homo sapiens miR-619-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 1 gctggga 7
>mml-miR-30b-3p MIMAT0026563 Macaca mulatta miR-30b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>ssc-miR-30c-3p MIMAT0022922 Sus scrofa miR-30c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>dre-miR-204-2-3p MIMAT0031987 Danio rerio miR-204-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 1 gctggga 7
>dre-miR-204-3p MIMAT0031924 Danio rerio miR-204-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 2 gctggga 8
>rno-miR-204-3p MIMAT0004739 Rattus norvegicus miR-204-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 1 gctggga 7
>rno-miR-30c-2-3p MIMAT0005442 Rattus norvegicus miR-30c-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>rno-miR-30c-1-3p MIMAT0004719 Rattus norvegicus miR-30c-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>hsa-miR-30c-1-3p MIMAT0004674 Homo sapiens miR-30c-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>mmu-miR-30c-2-3p MIMAT0005438 Mus musculus miR-30c-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>mmu-miR-30c-1-3p MIMAT0004616 Mus musculus miR-30c-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>hsa-miR-30b-3p MIMAT0004589 Homo sapiens miR-30b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>hsa-miR-204-3p MIMAT0022693 Homo sapiens miR-204-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 1 gctggga 7
>hsa-miR-30c-2-3p MIMAT0004550 Homo sapiens miR-30c-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgggag 8
|||||||
Sbjct: 1 ctgggag 7
>mmu-miR-204-3p MIMAT0017002 Mus musculus miR-204-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctggga 7
|||||||
Sbjct: 1 gctggga 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 317
Number of extensions: 257
Number of successful extensions: 222
Number of sequences better than 100.0: 60
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 60
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)