BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hbv-miR-b20-3p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

str-miR-7880q-5p MIMAT0033378 Strongyloides ratti miR-7880q-5p         14      20
ppc-miR-133-5p MIMAT0032914 Pristionchus pacificus miR-133-5p          14      20
mdo-miR-29b-2-5p MIMAT0031047 Monodelphis domestica miR-29b-2-5p       14      20
mml-miR-6131 MIMAT0024624 Macaca mulatta miR-6131                      14      20
cgr-miR-29b-5p MIMAT0023885 Cricetulus griseus miR-29b-5p              14      20
lgi-miR-133-5p MIMAT0009579 Lottia gigantea miR-133-5p                 14      20
tca-miR-133-5p MIMAT0019116 Tribolium castaneum miR-133-5p             14      20
ptr-miR-634 MIMAT0008291 Pan troglodytes miR-634                       14      20
mml-miR-29b-2-5p MIMAT0031079 Macaca mulatta miR-29b-2-5p              14      20
mml-miR-29b-1-5p MIMAT0026803 Macaca mulatta miR-29b-1-5p              14      20
gga-miR-1701 MIMAT0007593 Gallus gallus miR-1701                       14      20
mdo-miR-29b-1-5p MIMAT0026703 Monodelphis domestica miR-29b-1-5p       14      20
hsa-miR-634 MIMAT0003304 Homo sapiens miR-634                          14      20
gga-miR-29b-2-5p MIMAT0031072 Gallus gallus miR-29b-2-5p               14      20
gga-miR-29b-1-5p MIMAT0026488 Gallus gallus miR-29b-1-5p               14      20
dme-miR-133-5p MIMAT0020806 Drosophila melanogaster miR-133-5p         14      20
mmu-miR-29b-1-5p MIMAT0004523 Mus musculus miR-29b-1-5p                14      20
hsa-miR-29b-1-5p MIMAT0004514 Homo sapiens miR-29b-1-5p                14      20
cel-miR-35-5p MIMAT0020303 Caenorhabditis elegans miR-35-5p            14      20
oha-miR-449a-3p MIMAT0036926 Ophiophagus hannah miR-449a-3p            12      80
oha-miR-29b-2-5p MIMAT0036880 Ophiophagus hannah miR-29b-2-5p          12      80
oha-miR-29b-1-5p MIMAT0036878 Ophiophagus hannah miR-29b-1-5p          12      80
oha-miR-133a-3-5p MIMAT0036703 Ophiophagus hannah miR-133a-3-5p        12      80
oha-miR-133b-5p MIMAT0036701 Ophiophagus hannah miR-133b-5p            12      80
chi-miR-29b-5p MIMAT0036114 Capra hircus miR-29b-5p                    12      80
bdi-miR9496 MIMAT0035505 Brachypodium distachyon miR9496               12      80
eca-miR-7035 MIMAT0034654 Equus caballus miR-7035                      12      80
cfa-miR-8888 MIMAT0034392 Canis familiaris miR-8888                    12      80
pra-miR8788b-3p MIMAT0034277 Phytophthora ramorum miR8788b-3p          12      80
pra-miR8788a-3p MIMAT0034275 Phytophthora ramorum miR8788a-3p          12      80
pin-miR8788-3p MIMAT0034269 Phytophthora infestans miR8788-3p          12      80
ppc-miR-8290-5p MIMAT0033093 Pristionchus pacificus miR-8290-5p        12      80
ssa-miR-29a-5p MIMAT0032583 Salmo salar miR-29a-5p                     12      80
ssa-miR-133b-5p MIMAT0032339 Salmo salar miR-133b-5p                   12      80
cbn-miR-7597 MIMAT0029653 Caenorhabditis brenneri miR-7597             12      80
crm-miR-7597 MIMAT0029612 Caenorhabditis remanei miR-7597              12      80
cbr-miR-7581 MIMAT0029582 Caenorhabditis briggsae miR-7581             12      80
ipu-miR-29c MIMAT0029492 Ictalurus punctatus miR-29c                   12      80
hsa-miR-6849-3p MIMAT0027599 Homo sapiens miR-6849-3p                  12      80
pol-miR-133-5p MIMAT0025432 Paralichthys olivaceus miR-133-5p          12      80
mmu-miR-6338 MIMAT0025081 Mus musculus miR-6338                        12      80
hvu-miR6179 MIMAT0024802 Hordeum vulgare miR6179                       12      80
bna-miR6033 MIMAT0023653 Brassica napus miR6033                        12      80
gma-miR5782 MIMAT0023187 Glycine max miR5782                           12      80
sha-miR-363 MIMAT0022831 Sarcophilus harrisii miR-363                  12      80
asu-miR-279b-5p MIMAT0021513 Ascaris suum miR-279b-5p                  12      80
mtr-miR2592bg MIMAT0021204 Medicago truncatula miR2592bg               12      80
mtr-miR2592bf MIMAT0021203 Medicago truncatula miR2592bf               12      80
mtr-miR2592be MIMAT0021202 Medicago truncatula miR2592be               12      80
mtr-miR2592bd MIMAT0021201 Medicago truncatula miR2592bd               12      80
mtr-miR2592bc MIMAT0021200 Medicago truncatula miR2592bc               12      80
mtr-miR2592bb MIMAT0021199 Medicago truncatula miR2592bb               12      80
mtr-miR2592ba MIMAT0021198 Medicago truncatula miR2592ba               12      80
mtr-miR2592az MIMAT0021197 Medicago truncatula miR2592az               12      80
mtr-miR2592ay MIMAT0021196 Medicago truncatula miR2592ay               12      80
mtr-miR2592ax MIMAT0021195 Medicago truncatula miR2592ax               12      80
mtr-miR2592aw MIMAT0021194 Medicago truncatula miR2592aw               12      80
mtr-miR2592av MIMAT0021193 Medicago truncatula miR2592av               12      80
mtr-miR2592au MIMAT0021192 Medicago truncatula miR2592au               12      80
mtr-miR2592at MIMAT0021191 Medicago truncatula miR2592at               12      80
mtr-miR2592as MIMAT0021190 Medicago truncatula miR2592as               12      80
mtr-miR2592ar MIMAT0021189 Medicago truncatula miR2592ar               12      80
mtr-miR2592aq MIMAT0021188 Medicago truncatula miR2592aq               12      80
mtr-miR2592ap MIMAT0021187 Medicago truncatula miR2592ap               12      80
rgl-miR5140 MIMAT0020651 Rehmannia glutinosa miR5140                   12      80
hsa-miR-4738-5p MIMAT0019866 Homo sapiens miR-4738-5p                  12      80
pma-miR-29d-5p MIMAT0019420 Petromyzon marinus miR-29d-5p              12      80
tca-miR-3868-5p MIMAT0018828 Tribolium castaneum miR-3868-5p           12      80
hsa-miR-3663-5p MIMAT0018084 Homo sapiens miR-3663-5p                  12      80
hsa-miR-4299 MIMAT0016851 Homo sapiens miR-4299                        12      80
cin-miR-4113-5p MIMAT0016703 Ciona intestinalis miR-4113-5p            12      80
cin-miR-15-3p MIMAT0016398 Ciona intestinalis miR-15-3p                12      80
rno-miR-133c MIMAT0017872 Rattus norvegicus miR-133c                   12      80
ppy-miR-1226 MIMAT0016162 Pongo pygmaeus miR-1226                      12      80
bmo-miR-3334 MIMAT0015521 Bombyx mori miR-3334                         12      80
api-miR-3015c MIMAT0014794 Acyrthosiphon pisum miR-3015c               12      80
tgu-miR-29b-1-5p MIMAT0031064 Taeniopygia guttata miR-29b-1-5p         12      80
hvt-miR-H5-5p MIMAT0012716 Herpesvirus of miR-H5-5p                    12      80
cte-miR-2688-5p MIMAT0013540 Capitella teleta miR-2688-5p              12      80
dsi-miR-992-5p MIMAT0012491 Drosophila simulans miR-992-5p             12      80
hbv-miR-B20-3p MIMAT0031158 Herpes B miR-B20-3p                        12      80
ppc-miR-2265 MIMAT0011700 Pristionchus pacificus miR-2265              12      80
crm-miR-35c-5p MIMAT0011613 Caenorhabditis remanei miR-35c-5p          12      80
hsa-miR-548q MIMAT0011163 Homo sapiens miR-548q                        12      80
tca-bantam-5p MIMAT0019178 Tribolium castaneum bantam-5p               12      80
osa-miR2092-3p MIMAT0010049 Oryza sativa miR2092-3p                    12      80
bmo-bantam-5p MIMAT0015278 Bombyx mori bantam-5p                       12      80
cfa-miR-1838 MIMAT0006644 Canis familiaris miR-1838                    12      80
gga-miR-1656 MIMAT0007535 Gallus gallus miR-1656                       12      80
gga-miR-1654 MIMAT0007533 Gallus gallus miR-1654                       12      80
gma-miR1511 MIMAT0007369 Glycine max miR1511                           12      80
cin-miR-92a-5p MIMAT0015253 Ciona intestinalis miR-92a-5p              12      80
oan-miR-133b-5p MIMAT0006996 Ornithorhynchus anatinus miR-133b-5p      12      80
oan-miR-29b-5p MIMAT0006808 Ornithorhynchus anatinus miR-29b-5p        12      80
mml-miR-1226 MIMAT0005579 Macaca mulatta miR-1226                      12      80
ptr-miR-1226 MIMAT0005578 Pan troglodytes miR-1226                     12      80
hsa-miR-1226-3p MIMAT0005577 Homo sapiens miR-1226-3p                  12      80
kshv-miR-K12-12-5p MIMAT0003712 Kaposi sarcoma-associated miR-K1...    12      80
rno-miR-133b-5p MIMAT0017205 Rattus norvegicus miR-133b-5p             12      80
mmu-miR-470-3p MIMAT0004760 Mus musculus miR-470-3p                    12      80
dre-miR-133c-5p MIMAT0031971 Danio rerio miR-133c-5p                   12      80
dre-miR-133b-5p MIMAT0003405 Danio rerio miR-133b-5p                   12      80
gga-miR-133c-5p MIMAT0026537 Gallus gallus miR-133c-5p                 12      80
rno-miR-29b-5p MIMAT0004717 Rattus norvegicus miR-29b-5p               12      80
mmu-miR-133b-5p MIMAT0017083 Mus musculus miR-133b-5p                  12      80
mmu-miR-29b-2-5p MIMAT0017063 Mus musculus miR-29b-2-5p                12      80
mmu-miR-133a-5p MIMAT0003473 Mus musculus miR-133a-5p                  12      80
hsa-miR-29b-2-5p MIMAT0004515 Homo sapiens miR-29b-2-5p                12      80
>str-miR-7880q-5p MIMAT0033378 Strongyloides ratti miR-7880q-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus