BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s22
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ghr-miR7486b MIMAT0029128 Gossypium hirsutum miR7486b 16 6.9
ghr-miR7486a MIMAT0029127 Gossypium hirsutum miR7486a 16 6.9
tch-miR-671-5p MIMAT0036579 Tupaia chinensis miR-671-5p 14 27
ggo-miR-516a-3p MIMAT0036442 Gorilla gorilla miR-516a-3p 14 27
gma-miR9748 MIMAT0036375 Glycine max miR9748 14 27
chi-miR-671-5p MIMAT0036286 Capra hircus miR-671-5p 14 27
hhi-miR-129b-3p MIMAT0030350 Hippoglossus hippoglossus miR-129b-3p 14 27
mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p 14 27
mml-miR-518g-3p MIMAT0028297 Macaca mulatta miR-518g-3p 14 27
hsa-miR-7162-5p MIMAT0028234 Homo sapiens miR-7162-5p 14 27
mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p 14 27
hsa-miR-6828-5p MIMAT0027556 Homo sapiens miR-6828-5p 14 27
ssc-miR-671-5p MIMAT0025381 Sus scrofa miR-671-5p 14 27
cgr-miR-671-5p MIMAT0023996 Cricetulus griseus miR-671-5p 14 27
mtr-miR5557-3p MIMAT0022216 Medicago truncatula miR5557-3p 14 27
osa-miR5499 MIMAT0022132 Oryza sativa miR5499 14 27
aca-miR-5418 MIMAT0022038 Anolis carolinensis miR-5418 14 27
ppy-miR-671-5p MIMAT0016096 Pongo pygmaeus miR-671-5p 14 27
ppy-miR-516a-3p MIMAT0015946 Pongo pygmaeus miR-516a-3p 14 27
zma-miR482-3p MIMAT0014027 Zea mays miR482-3p 14 27
eca-miR-671-5p MIMAT0012948 Equus caballus miR-671-5p 14 27
bta-miR-2426 MIMAT0011996 Bos taurus miR-2426 14 27
bta-miR-671 MIMAT0009365 Bos taurus miR-671 14 27
ptr-miR-516a MIMAT0008182 Pan troglodytes miR-516a 14 27
mml-miR-671-5p MIMAT0006505 Macaca mulatta miR-671-5p 14 27
oan-miR-1375-5p MIMAT0007064 Ornithorhynchus anatinus miR-1375-5p 14 27
mmu-miR-671-5p MIMAT0003731 Mus musculus miR-671-5p 14 27
hsa-miR-671-5p MIMAT0003880 Homo sapiens miR-671-5p 14 27
hsa-miR-516a-3p MIMAT0006778 Homo sapiens miR-516a-3p 14 27
hsa-miR-516b-3p MIMAT0002860 Homo sapiens miR-516b-3p 14 27
>ghr-miR7486b MIMAT0029128 Gossypium hirsutum miR7486b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gcttcctt 8
||||||||
Sbjct: 8 gcttcctt 1
>ghr-miR7486a MIMAT0029127 Gossypium hirsutum miR7486a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gcttcctt 8
||||||||
Sbjct: 8 gcttcctt 1
>tch-miR-671-5p MIMAT0036579 Tupaia chinensis miR-671-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>ggo-miR-516a-3p MIMAT0036442 Gorilla gorilla miR-516a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttcct 7
|||||||
Sbjct: 2 gcttcct 8
>gma-miR9748 MIMAT0036375 Glycine max miR9748
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttcctt 8
|||||||
Sbjct: 8 cttcctt 2
>chi-miR-671-5p MIMAT0036286 Capra hircus miR-671-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>hhi-miR-129b-3p MIMAT0030350 Hippoglossus hippoglossus
miR-129b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttcctt 8
|||||||
Sbjct: 7 cttcctt 1
>mml-miR-518g-3p MIMAT0028297 Macaca mulatta miR-518g-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>hsa-miR-7162-5p MIMAT0028234 Homo sapiens miR-7162-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttcct 7
|||||||
Sbjct: 2 gcttcct 8
>mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttcctt 8
|||||||
Sbjct: 7 cttcctt 1
>hsa-miR-6828-5p MIMAT0027556 Homo sapiens miR-6828-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>ssc-miR-671-5p MIMAT0025381 Sus scrofa miR-671-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>cgr-miR-671-5p MIMAT0023996 Cricetulus griseus miR-671-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>mtr-miR5557-3p MIMAT0022216 Medicago truncatula miR5557-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttcct 7
|||||||
Sbjct: 2 gcttcct 8
>osa-miR5499 MIMAT0022132 Oryza sativa miR5499
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttcctt 8
|||||||
Sbjct: 8 cttcctt 2
>aca-miR-5418 MIMAT0022038 Anolis carolinensis miR-5418
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cttcctt 8
|||||||
Sbjct: 1 cttcctt 7
>ppy-miR-671-5p MIMAT0016096 Pongo pygmaeus miR-671-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>ppy-miR-516a-3p MIMAT0015946 Pongo pygmaeus miR-516a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttcct 7
|||||||
Sbjct: 2 gcttcct 8
>zma-miR482-3p MIMAT0014027 Zea mays miR482-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cttcctt 8
|||||||
Sbjct: 2 cttcctt 8
>eca-miR-671-5p MIMAT0012948 Equus caballus miR-671-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>bta-miR-2426 MIMAT0011996 Bos taurus miR-2426
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttcctt 8
|||||||
Sbjct: 7 cttcctt 1
>bta-miR-671 MIMAT0009365 Bos taurus miR-671
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>ptr-miR-516a MIMAT0008182 Pan troglodytes miR-516a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttcct 7
|||||||
Sbjct: 2 gcttcct 8
>mml-miR-671-5p MIMAT0006505 Macaca mulatta miR-671-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>oan-miR-1375-5p MIMAT0007064 Ornithorhynchus anatinus
miR-1375-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttcct 7
|||||||
Sbjct: 2 gcttcct 8
>mmu-miR-671-5p MIMAT0003731 Mus musculus miR-671-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>hsa-miR-671-5p MIMAT0003880 Homo sapiens miR-671-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttcct 7
|||||||
Sbjct: 7 gcttcct 1
>hsa-miR-516a-3p MIMAT0006778 Homo sapiens miR-516a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttcct 7
|||||||
Sbjct: 2 gcttcct 8
>hsa-miR-516b-3p MIMAT0002860 Homo sapiens miR-516b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttcct 7
|||||||
Sbjct: 2 gcttcct 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 174
Number of extensions: 142
Number of successful extensions: 105
Number of sequences better than 100.0: 30
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 30
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
