BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tumv-miR-s81
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ssc-miR-9808-3p MIMAT0037026 Sus scrofa miR-9808-3p                    14      27
bra-miR9558-3p MIMAT0035670 Brassica rapa miR9558-3p                   14      27
dvi-miR-932-3p MIMAT0035574 Drosophila virilis miR-932-3p              14      27
efu-miR-9198e MIMAT0034783 Eptesicus fuscus miR-9198e                  14      27
hsa-miR-4327 MIMAT0016889 Homo sapiens miR-4327                        14      27
cqu-miR-932-3p MIMAT0014415 Culex quinquefasciatus miR-932-3p          14      27
aae-miR-932-3p MIMAT0014270 Aedes aegypti miR-932-3p                   14      27
cte-miR-2705 MIMAT0013571 Capitella teleta miR-2705                    14      27
dsi-miR-932-3p MIMAT0012478 Drosophila simulans miR-932-3p             14      27
dps-miR-932-3p MIMAT0012260 Drosophila pseudoobscura miR-932-3p        14      27
hsa-miR-2276-3p MIMAT0011775 Homo sapiens miR-2276-3p                  14      27
tca-miR-932-3p MIMAT0019132 Tribolium castaneum miR-932-3p             14      27
dme-miR-932-3p MIMAT0020860 Drosophila melanogaster miR-932-3p         14      27
>ssc-miR-9808-3p MIMAT0037026 Sus scrofa miR-9808-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 cttgcag 8
         |||||||
Sbjct: 2 cttgcag 8
>bra-miR9558-3p MIMAT0035670 Brassica rapa miR9558-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcttgca 7
         |||||||
Sbjct: 8 gcttgca 2
>dvi-miR-932-3p MIMAT0035574 Drosophila virilis miR-932-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcttgca 7
         |||||||
Sbjct: 7 gcttgca 1
>efu-miR-9198e MIMAT0034783 Eptesicus fuscus miR-9198e
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcttgca 7
         |||||||
Sbjct: 2 gcttgca 8
>hsa-miR-4327 MIMAT0016889 Homo sapiens miR-4327
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcttgca 7
         |||||||
Sbjct: 2 gcttgca 8
>cqu-miR-932-3p MIMAT0014415 Culex quinquefasciatus miR-932-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcttgca 7
         |||||||
Sbjct: 7 gcttgca 1
>aae-miR-932-3p MIMAT0014270 Aedes aegypti miR-932-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcttgca 7
         |||||||
Sbjct: 7 gcttgca 1
>cte-miR-2705 MIMAT0013571 Capitella teleta miR-2705
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cttgcag 8
         |||||||
Sbjct: 8 cttgcag 2
>dsi-miR-932-3p MIMAT0012478 Drosophila simulans miR-932-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcttgca 7
         |||||||
Sbjct: 7 gcttgca 1
>dps-miR-932-3p MIMAT0012260 Drosophila pseudoobscura miR-932-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcttgca 7
         |||||||
Sbjct: 7 gcttgca 1
>hsa-miR-2276-3p MIMAT0011775 Homo sapiens miR-2276-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cttgcag 8
         |||||||
Sbjct: 8 cttgcag 2
>tca-miR-932-3p MIMAT0019132 Tribolium castaneum miR-932-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcttgca 7
         |||||||
Sbjct: 7 gcttgca 1
>dme-miR-932-3p MIMAT0020860 Drosophila melanogaster miR-932-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcttgca 7
         |||||||
Sbjct: 7 gcttgca 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 106
Number of successful extensions: 73
Number of sequences better than 100.0: 13
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)