BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s81
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9808-3p MIMAT0037026 Sus scrofa miR-9808-3p 14 27
bra-miR9558-3p MIMAT0035670 Brassica rapa miR9558-3p 14 27
dvi-miR-932-3p MIMAT0035574 Drosophila virilis miR-932-3p 14 27
efu-miR-9198e MIMAT0034783 Eptesicus fuscus miR-9198e 14 27
hsa-miR-4327 MIMAT0016889 Homo sapiens miR-4327 14 27
cqu-miR-932-3p MIMAT0014415 Culex quinquefasciatus miR-932-3p 14 27
aae-miR-932-3p MIMAT0014270 Aedes aegypti miR-932-3p 14 27
cte-miR-2705 MIMAT0013571 Capitella teleta miR-2705 14 27
dsi-miR-932-3p MIMAT0012478 Drosophila simulans miR-932-3p 14 27
dps-miR-932-3p MIMAT0012260 Drosophila pseudoobscura miR-932-3p 14 27
hsa-miR-2276-3p MIMAT0011775 Homo sapiens miR-2276-3p 14 27
tca-miR-932-3p MIMAT0019132 Tribolium castaneum miR-932-3p 14 27
dme-miR-932-3p MIMAT0020860 Drosophila melanogaster miR-932-3p 14 27
>ssc-miR-9808-3p MIMAT0037026 Sus scrofa miR-9808-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cttgcag 8
|||||||
Sbjct: 2 cttgcag 8
>bra-miR9558-3p MIMAT0035670 Brassica rapa miR9558-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttgca 7
|||||||
Sbjct: 8 gcttgca 2
>dvi-miR-932-3p MIMAT0035574 Drosophila virilis miR-932-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttgca 7
|||||||
Sbjct: 7 gcttgca 1
>efu-miR-9198e MIMAT0034783 Eptesicus fuscus miR-9198e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgca 7
|||||||
Sbjct: 2 gcttgca 8
>hsa-miR-4327 MIMAT0016889 Homo sapiens miR-4327
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgca 7
|||||||
Sbjct: 2 gcttgca 8
>cqu-miR-932-3p MIMAT0014415 Culex quinquefasciatus miR-932-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttgca 7
|||||||
Sbjct: 7 gcttgca 1
>aae-miR-932-3p MIMAT0014270 Aedes aegypti miR-932-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttgca 7
|||||||
Sbjct: 7 gcttgca 1
>cte-miR-2705 MIMAT0013571 Capitella teleta miR-2705
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttgcag 8
|||||||
Sbjct: 8 cttgcag 2
>dsi-miR-932-3p MIMAT0012478 Drosophila simulans miR-932-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttgca 7
|||||||
Sbjct: 7 gcttgca 1
>dps-miR-932-3p MIMAT0012260 Drosophila pseudoobscura miR-932-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttgca 7
|||||||
Sbjct: 7 gcttgca 1
>hsa-miR-2276-3p MIMAT0011775 Homo sapiens miR-2276-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttgcag 8
|||||||
Sbjct: 8 cttgcag 2
>tca-miR-932-3p MIMAT0019132 Tribolium castaneum miR-932-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttgca 7
|||||||
Sbjct: 7 gcttgca 1
>dme-miR-932-3p MIMAT0020860 Drosophila melanogaster miR-932-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcttgca 7
|||||||
Sbjct: 7 gcttgca 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 106
Number of successful extensions: 73
Number of sequences better than 100.0: 13
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
