BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-1788-5p MIMAT0036753 Ophiophagus hannah miR-1788-5p 14 20
bra-miR408-3p MIMAT0035684 Brassica rapa miR408-3p 14 20
ssa-miR-1788-5p MIMAT0032412 Salmo salar miR-1788-5p 14 20
hhi-miR-1788 MIMAT0030352 Hippoglossus hippoglossus miR-1788 14 20
ipu-miR-1788 MIMAT0029433 Ictalurus punctatus miR-1788 14 20
tgu-miR-1788 MIMAT0025407 Taeniopygia guttata miR-1788 14 20
aca-miR-1788-5p MIMAT0021805 Anolis carolinensis miR-1788-5p 14 20
pma-miR-1788a-5p MIMAT0019561 Petromyzon marinus miR-1788a-5p 14 20
dre-miR-1788-5p MIMAT0011294 Danio rerio miR-1788-5p 14 20
nve-miR-2027-5p MIMAT0009772 Nematostella vectensis miR-2027-5p 14 20
gga-miR-1788-5p MIMAT0007700 Gallus gallus miR-1788-5p 14 20
gga-miR-1632-5p MIMAT0007504 Gallus gallus miR-1632-5p 14 20
mdv1-miR-M1-5p MIMAT0003920 Mareks disease miR-M1-5p 14 20
ata-miR2275b-3p MIMAT0037125 Aegilops tauschii miR2275b-3p 12 80
ssc-miR-9794-3p MIMAT0037012 Sus scrofa miR-9794-3p 12 80
oha-miR-100-3p MIMAT0036649 Ophiophagus hannah miR-100-3p 12 80
dvi-miR-963-5p MIMAT0035582 Drosophila virilis miR-963-5p 12 80
gsa-miR-76b-5p MIMAT0035334 Gyrodactylus salaris miR-76b-5p 12 80
efu-miR-338 MIMAT0035098 Eptesicus fuscus miR-338 12 80
gra-miR8679 MIMAT0034050 Gossypium raimondii miR8679 12 80
ppc-miR-8342-5p MIMAT0033229 Pristionchus pacificus miR-8342-5p 12 80
ppc-miR-8301-3p MIMAT0033122 Pristionchus pacificus miR-8301-3p 12 80
ssa-miR-100a-2-3p MIMAT0032279 Salmo salar miR-100a-2-3p 12 80
ssa-miR-100a-3p MIMAT0032278 Salmo salar miR-100a-3p 12 80
bbe-miR-4865-5p MIMAT0031687 Branchiostoma belcheri miR-4865-5p 12 80
ppe-miR6288c-5p MIMAT0031565 Prunus persica miR6288c-5p 12 80
ppe-miR6288b-5p MIMAT0031560 Prunus persica miR6288b-5p 12 80
mmu-miR-8097 MIMAT0031399 Mus musculus miR-8097 12 80
sbi-miR6230-3p MIMAT0026437 Sorghum bicolor miR6230-3p 12 80
mmu-miR-7022-3p MIMAT0027949 Mus musculus miR-7022-3p 12 80
mmu-miR-6968-3p MIMAT0027839 Mus musculus miR-6968-3p 12 80
mtr-miR5557-5p MIMAT0022215 Medicago truncatula miR5557-5p 12 80
osa-miR2275d MIMAT0022158 Oryza sativa miR2275d 12 80
gma-miR1535b MIMAT0021009 Glycine max miR1535b 12 80
dme-miR-4940-3p MIMAT0020147 Drosophila melanogaster miR-4940-3p 12 80
bfl-miR-4865-5p MIMAT0020099 Branchiostoma floridae miR-4865-5p 12 80
pma-miR-100a-3p MIMAT0019438 Petromyzon marinus miR-100a-3p 12 80
gma-miR4409 MIMAT0018328 Glycine max miR4409 12 80
gma-miR4387a MIMAT0018299 Glycine max miR4387a 12 80
hsa-miR-3655 MIMAT0018075 Homo sapiens miR-3655 12 80
vvi-miR3638-3p MIMAT0018050 Vitis vinifera miR3638-3p 12 80
cin-miR-375-3p MIMAT0016418 Ciona intestinalis miR-375-3p 12 80
gga-miR-3531-5p MIMAT0016381 Gallus gallus miR-3531-5p 12 80
esi-miR3457-3p MIMAT0017772 Ectocarpus siliculosus miR3457-3p 12 80
bmo-miR-3409 MIMAT0015615 Bombyx mori miR-3409 12 80
bmo-miR-3319 MIMAT0015507 Bombyx mori miR-3319 12 80
tgu-miR-100-3p MIMAT0014633 Taeniopygia guttata miR-100-3p 12 80
cqu-miR-988-3p MIMAT0014363 Culex quinquefasciatus miR-988-3p 12 80
rno-miR-544-5p MIMAT0017359 Rattus norvegicus miR-544-5p 12 80
bmo-miR-2817 MIMAT0013727 Bombyx mori miR-2817 12 80
dsi-miR-982a MIMAT0012515 Drosophila simulans miR-982a 12 80
tca-miR-125-3p MIMAT0019115 Tribolium castaneum miR-125-3p 12 80
gga-miR-1726 MIMAT0007625 Gallus gallus miR-1726 12 80
gga-miR-1610 MIMAT0007476 Gallus gallus miR-1610 12 80
gma-miR1535a MIMAT0007398 Glycine max miR1535a 12 80
mdo-miR-100-3p MIMAT0026656 Monodelphis domestica miR-100-3p 12 80
mml-miR-100-3p MIMAT0026580 Macaca mulatta miR-100-3p 12 80
hcmv-miR-US5-1 MIMAT0001579 Human cytomegalovirus miR-US5-1 12 80
cbr-miR-354 MIMAT0001312 Caenorhabditis briggsae miR-354 12 80
gga-miR-100-3p MIMAT0026539 Gallus gallus miR-100-3p 12 80
cel-miR-354-3p MIMAT0000696 Caenorhabditis elegans miR-354-3p 12 80
mmu-miR-100-3p MIMAT0017051 Mus musculus miR-100-3p 12 80
>oha-miR-1788-5p MIMAT0036753 Ophiophagus hannah miR-1788-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>bra-miR408-3p MIMAT0035684 Brassica rapa miR408-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>ssa-miR-1788-5p MIMAT0032412 Salmo salar miR-1788-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>hhi-miR-1788 MIMAT0030352 Hippoglossus hippoglossus miR-1788
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>ipu-miR-1788 MIMAT0029433 Ictalurus punctatus miR-1788
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>tgu-miR-1788 MIMAT0025407 Taeniopygia guttata miR-1788
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>aca-miR-1788-5p MIMAT0021805 Anolis carolinensis miR-1788-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>pma-miR-1788a-5p MIMAT0019561 Petromyzon marinus miR-1788a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>dre-miR-1788-5p MIMAT0011294 Danio rerio miR-1788-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>nve-miR-2027-5p MIMAT0009772 Nematostella vectensis miR-2027-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 1 gcttgtt 7
>gga-miR-1788-5p MIMAT0007700 Gallus gallus miR-1788-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>gga-miR-1632-5p MIMAT0007504 Gallus gallus miR-1632-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>mdv1-miR-M1-5p MIMAT0003920 Mareks disease miR-M1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgtt 7
|||||||
Sbjct: 2 gcttgtt 8
>ata-miR2275b-3p MIMAT0037125 Aegilops tauschii miR2275b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 1 cttgtt 6
>ssc-miR-9794-3p MIMAT0037012 Sus scrofa miR-9794-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 3 cttgtt 8
>oha-miR-100-3p MIMAT0036649 Ophiophagus hannah miR-100-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 8 gcttgt 3
>dvi-miR-963-5p MIMAT0035582 Drosophila virilis miR-963-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 6 cttgtt 1
>gsa-miR-76b-5p MIMAT0035334 Gyrodactylus salaris miR-76b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 2 cttgtt 7
>efu-miR-338 MIMAT0035098 Eptesicus fuscus miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 8 cttgtt 3
>gra-miR8679 MIMAT0034050 Gossypium raimondii miR8679
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 6 gcttgt 1
>ppc-miR-8342-5p MIMAT0033229 Pristionchus pacificus miR-8342-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 8 cttgtt 3
>ppc-miR-8301-3p MIMAT0033122 Pristionchus pacificus miR-8301-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 8 cttgtt 3
>ssa-miR-100a-2-3p MIMAT0032279 Salmo salar miR-100a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 6 gcttgt 1
>ssa-miR-100a-3p MIMAT0032278 Salmo salar miR-100a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 6 gcttgt 1
>bbe-miR-4865-5p MIMAT0031687 Branchiostoma belcheri miR-4865-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttgt 6
||||||
Sbjct: 1 gcttgt 6
>ppe-miR6288c-5p MIMAT0031565 Prunus persica miR6288c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 1 cttgtt 6
>ppe-miR6288b-5p MIMAT0031560 Prunus persica miR6288b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 1 cttgtt 6
>mmu-miR-8097 MIMAT0031399 Mus musculus miR-8097
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 6 cttgtt 1
>sbi-miR6230-3p MIMAT0026437 Sorghum bicolor miR6230-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 7 cttgtt 2
>mmu-miR-7022-3p MIMAT0027949 Mus musculus miR-7022-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 6 gcttgt 1
>mmu-miR-6968-3p MIMAT0027839 Mus musculus miR-6968-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 6 gcttgt 1
>mtr-miR5557-5p MIMAT0022215 Medicago truncatula miR5557-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 6 cttgtt 1
>osa-miR2275d MIMAT0022158 Oryza sativa miR2275d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 1 cttgtt 6
>gma-miR1535b MIMAT0021009 Glycine max miR1535b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 1 cttgtt 6
>dme-miR-4940-3p MIMAT0020147 Drosophila melanogaster
miR-4940-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 6 cttgtt 1
>bfl-miR-4865-5p MIMAT0020099 Branchiostoma floridae miR-4865-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttgt 6
||||||
Sbjct: 1 gcttgt 6
>pma-miR-100a-3p MIMAT0019438 Petromyzon marinus miR-100a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 6 gcttgt 1
>gma-miR4409 MIMAT0018328 Glycine max miR4409
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 7 cttgtt 2
>gma-miR4387a MIMAT0018299 Glycine max miR4387a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 6 cttgtt 1
>hsa-miR-3655 MIMAT0018075 Homo sapiens miR-3655
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttgt 6
||||||
Sbjct: 1 gcttgt 6
>vvi-miR3638-3p MIMAT0018050 Vitis vinifera miR3638-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 8 cttgtt 3
>cin-miR-375-3p MIMAT0016418 Ciona intestinalis miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 1 cttgtt 6
>gga-miR-3531-5p MIMAT0016381 Gallus gallus miR-3531-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 3 cttgtt 8
>esi-miR3457-3p MIMAT0017772 Ectocarpus siliculosus miR3457-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttgt 6
||||||
Sbjct: 3 gcttgt 8
>bmo-miR-3409 MIMAT0015615 Bombyx mori miR-3409
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 8 cttgtt 3
>bmo-miR-3319 MIMAT0015507 Bombyx mori miR-3319
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 6 gcttgt 1
>tgu-miR-100-3p MIMAT0014633 Taeniopygia guttata miR-100-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 6 gcttgt 1
>cqu-miR-988-3p MIMAT0014363 Culex quinquefasciatus miR-988-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 3 cttgtt 8
>rno-miR-544-5p MIMAT0017359 Rattus norvegicus miR-544-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 1 cttgtt 6
>bmo-miR-2817 MIMAT0013727 Bombyx mori miR-2817
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 6 cttgtt 1
>dsi-miR-982a MIMAT0012515 Drosophila simulans miR-982a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgtt 7
||||||
Sbjct: 8 cttgtt 3
>tca-miR-125-3p MIMAT0019115 Tribolium castaneum miR-125-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 6 gcttgt 1
>gga-miR-1726 MIMAT0007625 Gallus gallus miR-1726
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttgt 6
||||||
Sbjct: 3 gcttgt 8
>gga-miR-1610 MIMAT0007476 Gallus gallus miR-1610
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttgt 6
||||||
Sbjct: 3 gcttgt 8
>gma-miR1535a MIMAT0007398 Glycine max miR1535a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 1 cttgtt 6
>mdo-miR-100-3p MIMAT0026656 Monodelphis domestica miR-100-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttgt 6
||||||
Sbjct: 3 gcttgt 8
>mml-miR-100-3p MIMAT0026580 Macaca mulatta miR-100-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttgt 6
||||||
Sbjct: 3 gcttgt 8
>hcmv-miR-US5-1 MIMAT0001579 Human cytomegalovirus miR-US5-1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 8 gcttgt 3
>cbr-miR-354 MIMAT0001312 Caenorhabditis briggsae miR-354
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 3 cttgtt 8
>gga-miR-100-3p MIMAT0026539 Gallus gallus miR-100-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttgt 6
||||||
Sbjct: 3 gcttgt 8
>cel-miR-354-3p MIMAT0000696 Caenorhabditis elegans miR-354-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgtt 7
||||||
Sbjct: 3 cttgtt 8
>mmu-miR-100-3p MIMAT0017051 Mus musculus miR-100-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttgt 6
||||||
Sbjct: 6 gcttgt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 100
Number of extensions: 87
Number of successful extensions: 62
Number of sequences better than 100.0: 62
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 62
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
