BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-us5-1-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
crm-miR-80-5p MIMAT0011620 Caenorhabditis remanei miR-80-5p 14 20
nve-miR-2025-5p MIMAT0009759 Nematostella vectensis miR-2025-5p 14 20
cel-miR-80-5p MIMAT0000052 Caenorhabditis elegans miR-80-5p 14 20
oha-miR-9-1-5p MIMAT0036953 Ophiophagus hannah miR-9-1-5p 12 80
ptr-miR-518g-3p MIMAT0036455 Pan troglodytes miR-518g-3p 12 80
ggo-miR-518f-3p MIMAT0036417 Gorilla gorilla miR-518f-3p 12 80
dvi-miR-1017-3p MIMAT0035558 Drosophila virilis miR-1017-3p 12 80
bdi-miR9486a MIMAT0035493 Brachypodium distachyon miR9486a 12 80
efu-miR-30e MIMAT0035136 Eptesicus fuscus miR-30e 12 80
efu-miR-30a MIMAT0034973 Eptesicus fuscus miR-30a 12 80
sma-miR-8481-3p MIMAT0033684 Schistosoma mansoni miR-8481-3p 12 80
cel-miR-8192-3p MIMAT0032798 Caenorhabditis elegans miR-8192-3p 12 80
ssa-miR-736-5p MIMAT0032684 Salmo salar miR-736-5p 12 80
mdo-miR-7358-5p MIMAT0028728 Monodelphis domestica miR-7358-5p 12 80
mmu-miR-6384 MIMAT0025130 Mus musculus miR-6384 12 80
gma-miR396d MIMAT0018262 Glycine max miR396d 12 80
ame-miR-3790 MIMAT0018569 Apis mellifera miR-3790 12 80
hsa-miR-4315 MIMAT0016866 Homo sapiens miR-4315 12 80
ppy-miR-518f MIMAT0015958 Pongo pygmaeus miR-518f 12 80
ppy-miR-518a-3p MIMAT0015952 Pongo pygmaeus miR-518a-3p 12 80
mmu-miR-3095-5p MIMAT0014911 Mus musculus miR-3095-5p 12 80
aae-miR-315-3p MIMAT0015370 Aedes aegypti miR-315-3p 12 80
mtr-miR2666 MIMAT0013473 Medicago truncatula miR2666 12 80
mtr-miR2624 MIMAT0013344 Medicago truncatula miR2624 12 80
bta-miR-2322-5p MIMAT0011850 Bos taurus miR-2322-5p 12 80
sko-miR-96-3p MIMAT0019156 Saccoglossus kowalevskii miR-96-3p 12 80
ptr-miR-518f MIMAT0008191 Pan troglodytes miR-518f 12 80
ptr-miR-518a MIMAT0008186 Pan troglodytes miR-518a 12 80
gga-miR-1462-5p MIMAT0007340 Gallus gallus miR-1462-5p 12 80
rno-miR-742-3p MIMAT0005333 Rattus norvegicus miR-742-3p 12 80
dme-miR-1017-3p MIMAT0005030 Drosophila melanogaster miR-1017-3p 12 80
mtr-miR319b-5p MIMAT0026727 Medicago truncatula miR319b-5p 12 80
mmu-miR-742-3p MIMAT0004237 Mus musculus miR-742-3p 12 80
osa-miR535-3p MIMAT0022927 Oryza sativa miR535-3p 12 80
ppt-miR319d-5p.1 MIMAT0004325 Physcomitrella patens miR319d-5p.1 12 80
hsa-miR-518a-3p MIMAT0002863 Homo sapiens miR-518a-3p 12 80
hsa-miR-518f-3p MIMAT0002842 Homo sapiens miR-518f-3p 12 80
hcmv-miR-US5-2-5p MIMAT0026553 Human cytomegalovirus miR-US5-2-5p 12 80
dme-miR-315-3p MIMAT0020841 Drosophila melanogaster miR-315-3p 12 80
cel-miR-90-5p MIMAT0020326 Caenorhabditis elegans miR-90-5p 12 80
>crm-miR-80-5p MIMAT0011620 Caenorhabditis remanei miR-80-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctttcg 7
|||||||
Sbjct: 2 gctttcg 8
>nve-miR-2025-5p MIMAT0009759 Nematostella vectensis miR-2025-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctttcg 7
|||||||
Sbjct: 2 gctttcg 8
>cel-miR-80-5p MIMAT0000052 Caenorhabditis elegans miR-80-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gctttcg 7
|||||||
Sbjct: 2 gctttcg 8
>oha-miR-9-1-5p MIMAT0036953 Ophiophagus hannah miR-9-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctttcg 7
||||||
Sbjct: 1 ctttcg 6
>ptr-miR-518g-3p MIMAT0036455 Pan troglodytes miR-518g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>ggo-miR-518f-3p MIMAT0036417 Gorilla gorilla miR-518f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>dvi-miR-1017-3p MIMAT0035558 Drosophila virilis miR-1017-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>bdi-miR9486a MIMAT0035493 Brachypodium distachyon miR9486a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 3 gctttc 8
>efu-miR-30e MIMAT0035136 Eptesicus fuscus miR-30e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 1 gctttc 6
>efu-miR-30a MIMAT0034973 Eptesicus fuscus miR-30a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 1 gctttc 6
>sma-miR-8481-3p MIMAT0033684 Schistosoma mansoni miR-8481-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctttcg 7
||||||
Sbjct: 3 ctttcg 8
>cel-miR-8192-3p MIMAT0032798 Caenorhabditis elegans miR-8192-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctttcg 7
||||||
Sbjct: 6 ctttcg 1
>ssa-miR-736-5p MIMAT0032684 Salmo salar miR-736-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 3 gctttc 8
>mdo-miR-7358-5p MIMAT0028728 Monodelphis domestica miR-7358-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctttcg 7
||||||
Sbjct: 8 ctttcg 3
>mmu-miR-6384 MIMAT0025130 Mus musculus miR-6384
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 1 gctttc 6
>gma-miR396d MIMAT0018262 Glycine max miR396d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 8 gctttc 3
>ame-miR-3790 MIMAT0018569 Apis mellifera miR-3790
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>hsa-miR-4315 MIMAT0016866 Homo sapiens miR-4315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 3 gctttc 8
>ppy-miR-518f MIMAT0015958 Pongo pygmaeus miR-518f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>ppy-miR-518a-3p MIMAT0015952 Pongo pygmaeus miR-518a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>mmu-miR-3095-5p MIMAT0014911 Mus musculus miR-3095-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 3 gctttc 8
>aae-miR-315-3p MIMAT0015370 Aedes aegypti miR-315-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctttcg 7
||||||
Sbjct: 1 ctttcg 6
>mtr-miR2666 MIMAT0013473 Medicago truncatula miR2666
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctttcg 7
||||||
Sbjct: 6 ctttcg 1
>mtr-miR2624 MIMAT0013344 Medicago truncatula miR2624
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctttcg 7
||||||
Sbjct: 6 ctttcg 1
>bta-miR-2322-5p MIMAT0011850 Bos taurus miR-2322-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 8 gctttc 3
>sko-miR-96-3p MIMAT0019156 Saccoglossus kowalevskii miR-96-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctttcg 7
||||||
Sbjct: 6 ctttcg 1
>ptr-miR-518f MIMAT0008191 Pan troglodytes miR-518f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>ptr-miR-518a MIMAT0008186 Pan troglodytes miR-518a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>gga-miR-1462-5p MIMAT0007340 Gallus gallus miR-1462-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 3 gctttc 8
>rno-miR-742-3p MIMAT0005333 Rattus norvegicus miR-742-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>dme-miR-1017-3p MIMAT0005030 Drosophila melanogaster
miR-1017-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>mtr-miR319b-5p MIMAT0026727 Medicago truncatula miR319b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 3 gctttc 8
>mmu-miR-742-3p MIMAT0004237 Mus musculus miR-742-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>osa-miR535-3p MIMAT0022927 Oryza sativa miR535-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 3 gctttc 8
>ppt-miR319d-5p.1 MIMAT0004325 Physcomitrella patens
miR319d-5p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 3 gctttc 8
>hsa-miR-518a-3p MIMAT0002863 Homo sapiens miR-518a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>hsa-miR-518f-3p MIMAT0002842 Homo sapiens miR-518f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gctttc 6
||||||
Sbjct: 6 gctttc 1
>hcmv-miR-US5-2-5p MIMAT0026553 Human cytomegalovirus
miR-US5-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctttcg 7
||||||
Sbjct: 1 ctttcg 6
>dme-miR-315-3p MIMAT0020841 Drosophila melanogaster miR-315-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctttcg 7
||||||
Sbjct: 1 ctttcg 6
>cel-miR-90-5p MIMAT0020326 Caenorhabditis elegans miR-90-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gctttc 6
||||||
Sbjct: 3 gctttc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 50
Number of extensions: 47
Number of successful extensions: 40
Number of sequences better than 100.0: 40
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 40
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
