BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s48
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
esi-miR8622c MIMAT0033963 Ectocarpus siliculosus miR8622c 16 6.9
esi-miR8622b MIMAT0033959 Ectocarpus siliculosus miR8622b 14 27
esi-miR8622a MIMAT0033957 Ectocarpus siliculosus miR8622a 14 27
cel-miR-8208-3p MIMAT0032834 Caenorhabditis elegans miR-8208-3p 14 27
mtr-miR5279 MIMAT0021318 Medicago truncatula miR5279 14 27
mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p 14 27
ath-miR869.1 MIMAT0004320 Arabidopsis thaliana miR869.1 14 27
hsa-miR-659-3p MIMAT0003337 Homo sapiens miR-659-3p 14 27
hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p 14 27
>esi-miR8622c MIMAT0033963 Ectocarpus siliculosus miR8622c
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggaaccaa 8
||||||||
Sbjct: 8 ggaaccaa 1
>esi-miR8622b MIMAT0033959 Ectocarpus siliculosus miR8622b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaaccaa 8
|||||||
Sbjct: 8 gaaccaa 2
>esi-miR8622a MIMAT0033957 Ectocarpus siliculosus miR8622a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaaccaa 8
|||||||
Sbjct: 8 gaaccaa 2
>cel-miR-8208-3p MIMAT0032834 Caenorhabditis elegans miR-8208-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaaccaa 8
|||||||
Sbjct: 7 gaaccaa 1
>mtr-miR5279 MIMAT0021318 Medicago truncatula miR5279
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaacca 7
|||||||
Sbjct: 2 ggaacca 8
>mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaacca 7
|||||||
Sbjct: 8 ggaacca 2
>ath-miR869.1 MIMAT0004320 Arabidopsis thaliana miR869.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaaccaa 8
|||||||
Sbjct: 8 gaaccaa 2
>hsa-miR-659-3p MIMAT0003337 Homo sapiens miR-659-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaaccaa 8
|||||||
Sbjct: 8 gaaccaa 2
>hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaacca 7
|||||||
Sbjct: 8 ggaacca 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 165
Number of extensions: 155
Number of successful extensions: 113
Number of sequences better than 100.0: 9
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)