BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcv-miR-m1-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9234c MIMAT0034852 Eptesicus fuscus miR-9234c 14 20
eca-miR-9082 MIMAT0034627 Equus caballus miR-9082 14 20
hhi-miR-7790 MIMAT0030334 Hippoglossus hippoglossus miR-7790 14 20
mdo-miR-7351-3p MIMAT0028715 Monodelphis domestica miR-7351-3p 14 20
hsa-miR-6875-3p MIMAT0027651 Homo sapiens miR-6875-3p 14 20
ath-miR5641 MIMAT0022402 Arabidopsis thaliana miR5641 14 20
bdi-miR5056 MIMAT0020554 Brachypodium distachyon miR5056 14 20
ath-miR5020a MIMAT0020524 Arabidopsis thaliana miR5020a 14 20
tca-miR-3882-3p MIMAT0018861 Tribolium castaneum miR-3882-3p 14 20
mcv-miR-M1-5p MIMAT0010150 Merkel cell miR-M1-5p 14 20
dme-miR-979-3p MIMAT0005495 Drosophila melanogaster miR-979-3p 14 20
chi-miR-22-5p MIMAT0036075 Capra hircus miR-22-5p 12 80
efu-miR-7a MIMAT0035157 Eptesicus fuscus miR-7a 12 80
eca-miR-9020 MIMAT0034561 Equus caballus miR-9020 12 80
cfa-miR-8808 MIMAT0034298 Canis familiaris miR-8808 12 80
sma-miR-8420-3p MIMAT0033545 Schistosoma mansoni miR-8420-3p 12 80
cel-miR-8209-3p MIMAT0032836 Caenorhabditis elegans miR-8209-3p 12 80
ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p 12 80
ssa-miR-22a-5p MIMAT0032544 Salmo salar miR-22a-5p 12 80
stu-miR8024a-5p MIMAT0031201 Solanum tuberosum miR8024a-5p 12 80
ptc-miR7825 MIMAT0030384 Populus trichocarpa miR7825 12 80
bdi-miR7785-3p MIMAT0030327 Brachypodium distachyon miR7785-3p 12 80
mmu-miR-216c-5p MIMAT0029888 Mus musculus miR-216c-5p 12 80
lja-miR1507b MIMAT0029331 Lotus japonicus miR1507b 12 80
lja-miR1507a MIMAT0029330 Lotus japonicus miR1507a 12 80
mes-miR482 MIMAT0029297 Manihot esculenta miR482 12 80
oan-miR-7431-3p MIMAT0029013 Ornithorhynchus anatinus miR-7431-3p 12 80
mmu-miR-7074-5p MIMAT0028054 Mus musculus miR-7074-5p 12 80
mmu-miR-6769b-3p MIMAT0028041 Mus musculus miR-6769b-3p 12 80
mmu-miR-7048-3p MIMAT0028001 Mus musculus miR-7048-3p 12 80
mmu-miR-6946-3p MIMAT0027793 Mus musculus miR-6946-3p 12 80
hsa-miR-6507-5p MIMAT0025470 Homo sapiens miR-6507-5p 12 80
pol-miR-22-5p MIMAT0025426 Paralichthys olivaceus miR-22-5p 12 80
pde-miR482b MIMAT0025334 Pinus densata miR482b 12 80
cgr-miR-22-5p MIMAT0023856 Cricetulus griseus miR-22-5p 12 80
cgr-miR-1903 MIMAT0023820 Cricetulus griseus miR-1903 12 80
nta-miR6021 MIMAT0023588 Nicotiana tabacum miR6021 12 80
vun-miR482 MIMAT0022766 Vigna unguiculata miR482 12 80
aca-miR-22-5p MIMAT0021887 Anolis carolinensis miR-22-5p 12 80
gma-miR482d-3p MIMAT0021672 Glycine max miR482d-3p 12 80
hsa-miR-4778-3p MIMAT0019937 Homo sapiens miR-4778-3p 12 80
hsa-miR-4659b-3p MIMAT0019734 Homo sapiens miR-4659b-3p 12 80
hsa-miR-4659a-3p MIMAT0019727 Homo sapiens miR-4659a-3p 12 80
bcy-miR529 MIMAT0020967 Bruguiera cylindrica miR529 12 80
bgy-miR529 MIMAT0020963 Bruguiera gymnorhiza miR529 12 80
hsa-miR-4511 MIMAT0019048 Homo sapiens miR-4511 12 80
csi-miR482a-3p MIMAT0018480 Citrus sinensis miR482a-3p 12 80
gma-miR482b-3p MIMAT0020952 Glycine max miR482b-3p 12 80
gma-miR4361 MIMAT0018256 Glycine max miR4361 12 80
tca-miR-3811d-5p MIMAT0018650 Tribolium castaneum miR-3811d-5p 12 80
mghv-miR-M1-13-5p MIMAT0018172 Mouse gammaherpesvirus miR-M1-13-5p 12 80
ame-miR-3765 MIMAT0018539 Apis mellifera miR-3765 12 80
pab-miR482b MIMAT0018157 Picea abies miR482b 12 80
pab-miR482a MIMAT0018156 Picea abies miR482a 12 80
rno-miR-3568 MIMAT0017848 Rattus norvegicus miR-3568 12 80
gso-miR482b MIMAT0016354 Glycine soja miR482b 12 80
gso-miR482a MIMAT0016353 Glycine soja miR482a 12 80
sja-miR-36-5p MIMAT0016257 Schistosoma japonicum miR-36-5p 12 80
ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236 12 80
ssc-miR-22-5p MIMAT0015709 Sus scrofa miR-22-5p 12 80
aly-miR838-3p MIMAT0017622 Arabidopsis lyrata miR838-3p 12 80
zma-miR482-3p MIMAT0014027 Zea mays miR482-3p 12 80
mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b 12 80
mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a 12 80
dps-miR-2545a-5p MIMAT0012350 Drosophila pseudoobscura miR-2545a-5p 12 80
bta-miR-1434-3p MIMAT0012040 Bos taurus miR-1434-3p 12 80
pvu-miR482-3p MIMAT0011173 Phaseolus vulgaris miR482-3p 12 80
dvi-miR-2b-5p MIMAT0032075 Drosophila virilis miR-2b-5p 12 80
ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236 12 80
mmu-miR-1903 MIMAT0007868 Mus musculus miR-1903 12 80
gma-miR1526 MIMAT0007388 Glycine max miR1526 12 80
gma-miR482a-3p MIMAT0007364 Glycine max miR482a-3p 12 80
csa-miR-1497 MIMAT0006070 Ciona savignyi miR-1497 12 80
cin-miR-1497-3p MIMAT0006068 Ciona intestinalis miR-1497-3p 12 80
odi-miR-1497h MIMAT0006057 Oikopleura dioica miR-1497h 12 80
odi-miR-1497g MIMAT0006056 Oikopleura dioica miR-1497g 12 80
odi-miR-1497f MIMAT0006055 Oikopleura dioica miR-1497f 12 80
odi-miR-1497e MIMAT0006054 Oikopleura dioica miR-1497e 12 80
odi-miR-1497d MIMAT0006053 Oikopleura dioica miR-1497d 12 80
odi-miR-1497c MIMAT0006052 Oikopleura dioica miR-1497c 12 80
odi-miR-1497b MIMAT0006051 Oikopleura dioica miR-1497b 12 80
odi-miR-1497a MIMAT0006050 Oikopleura dioica miR-1497a 12 80
pta-miR482c MIMAT0006014 Pinus taeda miR482c 12 80
gga-miR-22-5p MIMAT0007287 Gallus gallus miR-22-5p 12 80
oan-miR-22-5p MIMAT0006961 Ornithorhynchus anatinus miR-22-5p 12 80
hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p 12 80
smo-miR1088-5p MIMAT0005240 Selaginella moellendorffii miR1088-5p 12 80
pta-miR482b MIMAT0005003 Pinus taeda miR482b 12 80
pta-miR482a MIMAT0005002 Pinus taeda miR482a 12 80
ath-miR838 MIMAT0004260 Arabidopsis thaliana miR838 12 80
mdo-miR-22-5p MIMAT0026651 Monodelphis domestica miR-22-5p 12 80
ath-miR780.2 MIMAT0003939 Arabidopsis thaliana miR780.2 12 80
bta-miR-22-5p MIMAT0003826 Bos taurus miR-22-5p 12 80
xtr-miR-22-5p MIMAT0003671 Xenopus tropicalis miR-22-5p 12 80
mml-miR-141-5p MIMAT0026561 Macaca mulatta miR-141-5p 12 80
kshv-miR-K12-2-3p MIMAT0015215 Kaposi sarcoma-associated miR-K12... 12 80
dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p 12 80
dre-miR-22a-5p MIMAT0031942 Danio rerio miR-22a-5p 12 80
rno-miR-22-5p MIMAT0003152 Rattus norvegicus miR-22-5p 12 80
mmu-miR-22-5p MIMAT0004629 Mus musculus miR-22-5p 12 80
hsa-miR-141-5p MIMAT0004598 Homo sapiens miR-141-5p 12 80
mmu-miR-141-5p MIMAT0004533 Mus musculus miR-141-5p 12 80
dme-miR-2b-2-5p MIMAT0020783 Drosophila melanogaster miR-2b-2-5p 12 80
hsa-miR-22-5p MIMAT0004495 Homo sapiens miR-22-5p 12 80
>efu-miR-9234c MIMAT0034852 Eptesicus fuscus miR-9234c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaagaa 7
|||||||
Sbjct: 7 ggaagaa 1
>eca-miR-9082 MIMAT0034627 Equus caballus miR-9082
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaagaa 7
|||||||
Sbjct: 7 ggaagaa 1
>hhi-miR-7790 MIMAT0030334 Hippoglossus hippoglossus miR-7790
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaagaa 7
|||||||
Sbjct: 2 ggaagaa 8
>mdo-miR-7351-3p MIMAT0028715 Monodelphis domestica miR-7351-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaagaa 7
|||||||
Sbjct: 1 ggaagaa 7
>hsa-miR-6875-3p MIMAT0027651 Homo sapiens miR-6875-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaagaa 7
|||||||
Sbjct: 8 ggaagaa 2
>ath-miR5641 MIMAT0022402 Arabidopsis thaliana miR5641
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaagaa 7
|||||||
Sbjct: 2 ggaagaa 8
>bdi-miR5056 MIMAT0020554 Brachypodium distachyon miR5056
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaagaa 7
|||||||
Sbjct: 2 ggaagaa 8
>ath-miR5020a MIMAT0020524 Arabidopsis thaliana miR5020a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaagaa 7
|||||||
Sbjct: 2 ggaagaa 8
>tca-miR-3882-3p MIMAT0018861 Tribolium castaneum miR-3882-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaagaa 7
|||||||
Sbjct: 2 ggaagaa 8
>mcv-miR-M1-5p MIMAT0010150 Merkel cell miR-M1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaagaa 7
|||||||
Sbjct: 2 ggaagaa 8
>dme-miR-979-3p MIMAT0005495 Drosophila melanogaster miR-979-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaagaa 7
|||||||
Sbjct: 7 ggaagaa 1
>chi-miR-22-5p MIMAT0036075 Capra hircus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>efu-miR-7a MIMAT0035157 Eptesicus fuscus miR-7a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaaga 6
||||||
Sbjct: 3 ggaaga 8
>eca-miR-9020 MIMAT0034561 Equus caballus miR-9020
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaaga 6
||||||
Sbjct: 3 ggaaga 8
>cfa-miR-8808 MIMAT0034298 Canis familiaris miR-8808
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaaga 6
||||||
Sbjct: 3 ggaaga 8
>sma-miR-8420-3p MIMAT0033545 Schistosoma mansoni miR-8420-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaaga 6
||||||
Sbjct: 3 ggaaga 8
>cel-miR-8209-3p MIMAT0032836 Caenorhabditis elegans miR-8209-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>ssa-miR-22a-5p MIMAT0032544 Salmo salar miR-22a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>stu-miR8024a-5p MIMAT0031201 Solanum tuberosum miR8024a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>ptc-miR7825 MIMAT0030384 Populus trichocarpa miR7825
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>bdi-miR7785-3p MIMAT0030327 Brachypodium distachyon miR7785-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 7 gaagaa 2
>mmu-miR-216c-5p MIMAT0029888 Mus musculus miR-216c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>lja-miR1507b MIMAT0029331 Lotus japonicus miR1507b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>lja-miR1507a MIMAT0029330 Lotus japonicus miR1507a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>mes-miR482 MIMAT0029297 Manihot esculenta miR482
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>oan-miR-7431-3p MIMAT0029013 Ornithorhynchus anatinus
miR-7431-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>mmu-miR-7074-5p MIMAT0028054 Mus musculus miR-7074-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaaga 6
||||||
Sbjct: 3 ggaaga 8
>mmu-miR-6769b-3p MIMAT0028041 Mus musculus miR-6769b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 8 ggaaga 3
>mmu-miR-7048-3p MIMAT0028001 Mus musculus miR-7048-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>mmu-miR-6946-3p MIMAT0027793 Mus musculus miR-6946-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 7 gaagaa 2
>hsa-miR-6507-5p MIMAT0025470 Homo sapiens miR-6507-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>pol-miR-22-5p MIMAT0025426 Paralichthys olivaceus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>pde-miR482b MIMAT0025334 Pinus densata miR482b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>cgr-miR-22-5p MIMAT0023856 Cricetulus griseus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>cgr-miR-1903 MIMAT0023820 Cricetulus griseus miR-1903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaaga 6
||||||
Sbjct: 3 ggaaga 8
>nta-miR6021 MIMAT0023588 Nicotiana tabacum miR6021
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaaga 6
||||||
Sbjct: 3 ggaaga 8
>vun-miR482 MIMAT0022766 Vigna unguiculata miR482
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>aca-miR-22-5p MIMAT0021887 Anolis carolinensis miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>gma-miR482d-3p MIMAT0021672 Glycine max miR482d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>hsa-miR-4778-3p MIMAT0019937 Homo sapiens miR-4778-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>hsa-miR-4659b-3p MIMAT0019734 Homo sapiens miR-4659b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 7 gaagaa 2
>hsa-miR-4659a-3p MIMAT0019727 Homo sapiens miR-4659a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 7 gaagaa 2
>bcy-miR529 MIMAT0020967 Bruguiera cylindrica miR529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>bgy-miR529 MIMAT0020963 Bruguiera gymnorhiza miR529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>hsa-miR-4511 MIMAT0019048 Homo sapiens miR-4511
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>csi-miR482a-3p MIMAT0018480 Citrus sinensis miR482a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>gma-miR482b-3p MIMAT0020952 Glycine max miR482b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>gma-miR4361 MIMAT0018256 Glycine max miR4361
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaaga 6
||||||
Sbjct: 3 ggaaga 8
>tca-miR-3811d-5p MIMAT0018650 Tribolium castaneum miR-3811d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 6 gaagaa 1
>mghv-miR-M1-13-5p MIMAT0018172 Mouse gammaherpesvirus
miR-M1-13-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaaga 6
||||||
Sbjct: 3 ggaaga 8
>ame-miR-3765 MIMAT0018539 Apis mellifera miR-3765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>pab-miR482b MIMAT0018157 Picea abies miR482b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>pab-miR482a MIMAT0018156 Picea abies miR482a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>rno-miR-3568 MIMAT0017848 Rattus norvegicus miR-3568
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>gso-miR482b MIMAT0016354 Glycine soja miR482b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>gso-miR482a MIMAT0016353 Glycine soja miR482a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>sja-miR-36-5p MIMAT0016257 Schistosoma japonicum miR-36-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>ppy-miR-1236 MIMAT0016166 Pongo pygmaeus miR-1236
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 8 ggaaga 3
>ssc-miR-22-5p MIMAT0015709 Sus scrofa miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>aly-miR838-3p MIMAT0017622 Arabidopsis lyrata miR838-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>zma-miR482-3p MIMAT0014027 Zea mays miR482-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>mtr-miR2673b MIMAT0013494 Medicago truncatula miR2673b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 8 ggaaga 3
>mtr-miR2673a MIMAT0013493 Medicago truncatula miR2673a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 8 ggaaga 3
>dps-miR-2545a-5p MIMAT0012350 Drosophila pseudoobscura
miR-2545a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>bta-miR-1434-3p MIMAT0012040 Bos taurus miR-1434-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 1 gaagaa 6
>pvu-miR482-3p MIMAT0011173 Phaseolus vulgaris miR482-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>dvi-miR-2b-5p MIMAT0032075 Drosophila virilis miR-2b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 6 gaagaa 1
>ptr-miR-1236 MIMAT0007968 Pan troglodytes miR-1236
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 8 ggaaga 3
>mmu-miR-1903 MIMAT0007868 Mus musculus miR-1903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>gma-miR1526 MIMAT0007388 Glycine max miR1526
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaaga 6
||||||
Sbjct: 3 ggaaga 8
>gma-miR482a-3p MIMAT0007364 Glycine max miR482a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>csa-miR-1497 MIMAT0006070 Ciona savignyi miR-1497
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>cin-miR-1497-3p MIMAT0006068 Ciona intestinalis miR-1497-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497h MIMAT0006057 Oikopleura dioica miR-1497h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497g MIMAT0006056 Oikopleura dioica miR-1497g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497f MIMAT0006055 Oikopleura dioica miR-1497f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497e MIMAT0006054 Oikopleura dioica miR-1497e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497d MIMAT0006053 Oikopleura dioica miR-1497d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497c MIMAT0006052 Oikopleura dioica miR-1497c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497b MIMAT0006051 Oikopleura dioica miR-1497b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>odi-miR-1497a MIMAT0006050 Oikopleura dioica miR-1497a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>pta-miR482c MIMAT0006014 Pinus taeda miR482c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>gga-miR-22-5p MIMAT0007287 Gallus gallus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>oan-miR-22-5p MIMAT0006961 Ornithorhynchus anatinus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>hsa-miR-1236-3p MIMAT0005591 Homo sapiens miR-1236-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 8 ggaaga 3
>smo-miR1088-5p MIMAT0005240 Selaginella moellendorffii
miR1088-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagaa 7
||||||
Sbjct: 3 gaagaa 8
>pta-miR482b MIMAT0005003 Pinus taeda miR482b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>pta-miR482a MIMAT0005002 Pinus taeda miR482a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>ath-miR838 MIMAT0004260 Arabidopsis thaliana miR838
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>mdo-miR-22-5p MIMAT0026651 Monodelphis domestica miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>ath-miR780.2 MIMAT0003939 Arabidopsis thaliana miR780.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 6 gaagaa 1
>bta-miR-22-5p MIMAT0003826 Bos taurus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>xtr-miR-22-5p MIMAT0003671 Xenopus tropicalis miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>mml-miR-141-5p MIMAT0026561 Macaca mulatta miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 6 ggaaga 1
>kshv-miR-K12-2-3p MIMAT0015215 Kaposi sarcoma-associated
miR-K12-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 8 ggaaga 3
>dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>dre-miR-22a-5p MIMAT0031942 Danio rerio miR-22a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>rno-miR-22-5p MIMAT0003152 Rattus norvegicus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>mmu-miR-22-5p MIMAT0004629 Mus musculus miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
>hsa-miR-141-5p MIMAT0004598 Homo sapiens miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 8 ggaaga 3
>mmu-miR-141-5p MIMAT0004533 Mus musculus miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaaga 6
||||||
Sbjct: 8 ggaaga 3
>dme-miR-2b-2-5p MIMAT0020783 Drosophila melanogaster
miR-2b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 6 gaagaa 1
>hsa-miR-22-5p MIMAT0004495 Homo sapiens miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagaa 7
||||||
Sbjct: 8 gaagaa 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 225
Number of extensions: 214
Number of successful extensions: 104
Number of sequences better than 100.0: 104
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 104
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
