BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-28-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-6909-3p MIMAT0027719 Mus musculus miR-6909-3p 14 20
hsa-miR-5581-5p MIMAT0022275 Homo sapiens miR-5581-5p 14 20
hsa-miR-4297 MIMAT0016846 Homo sapiens miR-4297 14 20
rlcv-miR-rL1-28-5p MIMAT0019193 Rhesus lymphocryptovirus miR-rL1... 14 20
iltv-miR-I2 MIMAT0012725 Infectious laryngotracheitis miR-I2 14 20
bta-miR-2387 MIMAT0011939 Bos taurus miR-2387 14 20
ssc-miR-9816-3p MIMAT0037034 Sus scrofa miR-9816-3p 12 80
ggo-miR-524-3p MIMAT0036424 Gorilla gorilla miR-524-3p 12 80
ggo-miR-525-3p MIMAT0036413 Gorilla gorilla miR-525-3p 12 80
eca-miR-8957 MIMAT0034491 Equus caballus miR-8957 12 80
cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823 12 80
sma-miR-8465-3p MIMAT0033650 Schistosoma mansoni miR-8465-3p 12 80
cel-miR-8210-5p MIMAT0032837 Caenorhabditis elegans miR-8210-5p 12 80
mmu-miR-7686-5p MIMAT0029898 Mus musculus miR-7686-5p 12 80
lja-miR7530 MIMAT0029353 Lotus japonicus miR7530 12 80
mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p 12 80
mml-miR-7166-3p MIMAT0028267 Macaca mulatta miR-7166-3p 12 80
mmu-miR-7077-3p MIMAT0028061 Mus musculus miR-7077-3p 12 80
mmu-miR-7054-5p MIMAT0028012 Mus musculus miR-7054-5p 12 80
mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p 12 80
mmu-miR-6983-5p MIMAT0027868 Mus musculus miR-6983-5p 12 80
hsa-miR-6880-3p MIMAT0027661 Homo sapiens miR-6880-3p 12 80
hsa-miR-6876-5p MIMAT0027652 Homo sapiens miR-6876-5p 12 80
gga-miR-6667-5p MIMAT0025768 Gallus gallus miR-6667-5p 12 80
gga-miR-6597-3p MIMAT0025692 Gallus gallus miR-6597-3p 12 80
gga-miR-6558-3p MIMAT0025624 Gallus gallus miR-6558-3p 12 80
hsa-miR-6126 MIMAT0024599 Homo sapiens miR-6126 12 80
hsa-miR-6125 MIMAT0024598 Homo sapiens miR-6125 12 80
cel-miR-5548-5p MIMAT0022187 Caenorhabditis elegans miR-5548-5p 12 80
hsa-miR-5196-5p MIMAT0021128 Homo sapiens miR-5196-5p 12 80
osa-miR5074 MIMAT0020559 Oryza sativa miR5074 12 80
hsa-miR-4747-5p MIMAT0019882 Homo sapiens miR-4747-5p 12 80
hsa-miR-4476 MIMAT0019003 Homo sapiens miR-4476 12 80
tca-miR-3905-5p MIMAT0018913 Tribolium castaneum miR-3905-5p 12 80
hsa-miR-3714 MIMAT0018165 Homo sapiens miR-3714 12 80
hsa-miR-3614-3p MIMAT0017993 Homo sapiens miR-3614-3p 12 80
rno-miR-3557-5p MIMAT0017819 Rattus norvegicus miR-3557-5p 12 80
ppy-miR-525-3p MIMAT0015983 Pongo pygmaeus miR-525-3p 12 80
ppy-miR-524-3p MIMAT0015981 Pongo pygmaeus miR-524-3p 12 80
tgu-miR-2996 MIMAT0014600 Taeniopygia guttata miR-2996 12 80
bta-miR-449d MIMAT0011962 Bos taurus miR-449d 12 80
cbr-miR-90b-5p MIMAT0011471 Caenorhabditis briggsae miR-90b-5p 12 80
sme-miR-2203-5p MIMAT0011419 Schmidtea mediterranea miR-2203-5p 12 80
ptr-miR-525 MIMAT0008209 Pan troglodytes miR-525 12 80
ptr-miR-524 MIMAT0008208 Pan troglodytes miR-524 12 80
hsa-miR-524-3p MIMAT0002850 Homo sapiens miR-524-3p 12 80
hsa-miR-525-3p MIMAT0002839 Homo sapiens miR-525-3p 12 80
rno-miR-320-5p MIMAT0017168 Rattus norvegicus miR-320-5p 12 80
mmu-miR-320-5p MIMAT0017057 Mus musculus miR-320-5p 12 80
>mmu-miR-6909-3p MIMAT0027719 Mus musculus miR-6909-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaaggc 7
|||||||
Sbjct: 8 ggaaggc 2
>hsa-miR-5581-5p MIMAT0022275 Homo sapiens miR-5581-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaaggc 7
|||||||
Sbjct: 8 ggaaggc 2
>hsa-miR-4297 MIMAT0016846 Homo sapiens miR-4297
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaaggc 7
|||||||
Sbjct: 8 ggaaggc 2
>rlcv-miR-rL1-28-5p MIMAT0019193 Rhesus lymphocryptovirus
miR-rL1-28-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaaggc 7
|||||||
Sbjct: 2 ggaaggc 8
>iltv-miR-I2 MIMAT0012725 Infectious laryngotracheitis miR-I2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaaggc 7
|||||||
Sbjct: 1 ggaaggc 7
>bta-miR-2387 MIMAT0011939 Bos taurus miR-2387
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaaggc 7
|||||||
Sbjct: 2 ggaaggc 8
>ssc-miR-9816-3p MIMAT0037034 Sus scrofa miR-9816-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>ggo-miR-524-3p MIMAT0036424 Gorilla gorilla miR-524-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 1 gaaggc 6
>ggo-miR-525-3p MIMAT0036413 Gorilla gorilla miR-525-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 1 gaaggc 6
>eca-miR-8957 MIMAT0034491 Equus caballus miR-8957
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggc 7
||||||
Sbjct: 7 gaaggc 2
>cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 8 ggaagg 3
>sma-miR-8465-3p MIMAT0033650 Schistosoma mansoni miR-8465-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 1 ggaagg 6
>cel-miR-8210-5p MIMAT0032837 Caenorhabditis elegans miR-8210-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggc 7
||||||
Sbjct: 7 gaaggc 2
>mmu-miR-7686-5p MIMAT0029898 Mus musculus miR-7686-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 6 ggaagg 1
>lja-miR7530 MIMAT0029353 Lotus japonicus miR7530
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 6 ggaagg 1
>mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>mml-miR-7166-3p MIMAT0028267 Macaca mulatta miR-7166-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>mmu-miR-7077-3p MIMAT0028061 Mus musculus miR-7077-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 6 ggaagg 1
>mmu-miR-7054-5p MIMAT0028012 Mus musculus miR-7054-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>mmu-miR-6983-5p MIMAT0027868 Mus musculus miR-6983-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>hsa-miR-6880-3p MIMAT0027661 Homo sapiens miR-6880-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggc 7
||||||
Sbjct: 8 gaaggc 3
>hsa-miR-6876-5p MIMAT0027652 Homo sapiens miR-6876-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>gga-miR-6667-5p MIMAT0025768 Gallus gallus miR-6667-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>gga-miR-6597-3p MIMAT0025692 Gallus gallus miR-6597-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 6 ggaagg 1
>gga-miR-6558-3p MIMAT0025624 Gallus gallus miR-6558-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggc 7
||||||
Sbjct: 8 gaaggc 3
>hsa-miR-6126 MIMAT0024599 Homo sapiens miR-6126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 3 gaaggc 8
>hsa-miR-6125 MIMAT0024598 Homo sapiens miR-6125
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>cel-miR-5548-5p MIMAT0022187 Caenorhabditis elegans miR-5548-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggc 7
||||||
Sbjct: 6 gaaggc 1
>hsa-miR-5196-5p MIMAT0021128 Homo sapiens miR-5196-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>osa-miR5074 MIMAT0020559 Oryza sativa miR5074
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 1 gaaggc 6
>hsa-miR-4747-5p MIMAT0019882 Homo sapiens miR-4747-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>hsa-miR-4476 MIMAT0019003 Homo sapiens miR-4476
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>tca-miR-3905-5p MIMAT0018913 Tribolium castaneum miR-3905-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 1 ggaagg 6
>hsa-miR-3714 MIMAT0018165 Homo sapiens miR-3714
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 1 gaaggc 6
>hsa-miR-3614-3p MIMAT0017993 Homo sapiens miR-3614-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggc 7
||||||
Sbjct: 8 gaaggc 3
>rno-miR-3557-5p MIMAT0017819 Rattus norvegicus miR-3557-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggc 7
||||||
Sbjct: 6 gaaggc 1
>ppy-miR-525-3p MIMAT0015983 Pongo pygmaeus miR-525-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 1 gaaggc 6
>ppy-miR-524-3p MIMAT0015981 Pongo pygmaeus miR-524-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 1 gaaggc 6
>tgu-miR-2996 MIMAT0014600 Taeniopygia guttata miR-2996
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 6 ggaagg 1
>bta-miR-449d MIMAT0011962 Bos taurus miR-449d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 1 gaaggc 6
>cbr-miR-90b-5p MIMAT0011471 Caenorhabditis briggsae miR-90b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggc 7
||||||
Sbjct: 8 gaaggc 3
>sme-miR-2203-5p MIMAT0011419 Schmidtea mediterranea miR-2203-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 3 gaaggc 8
>ptr-miR-525 MIMAT0008209 Pan troglodytes miR-525
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 1 gaaggc 6
>ptr-miR-524 MIMAT0008208 Pan troglodytes miR-524
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 1 gaaggc 6
>hsa-miR-524-3p MIMAT0002850 Homo sapiens miR-524-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 1 gaaggc 6
>hsa-miR-525-3p MIMAT0002839 Homo sapiens miR-525-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggc 7
||||||
Sbjct: 1 gaaggc 6
>rno-miR-320-5p MIMAT0017168 Rattus norvegicus miR-320-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggc 7
||||||
Sbjct: 6 gaaggc 1
>mmu-miR-320-5p MIMAT0017057 Mus musculus miR-320-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggc 7
||||||
Sbjct: 6 gaaggc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 89
Number of extensions: 83
Number of successful extensions: 49
Number of sequences better than 100.0: 49
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 49
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
