BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blv-miR-b5-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9813-5p MIMAT0037031 Sus scrofa miR-9813-5p 14 20
sma-miR-8465-3p MIMAT0033650 Schistosoma mansoni miR-8465-3p 14 20
mmu-miR-7685-5p MIMAT0029896 Mus musculus miR-7685-5p 14 20
blv-miR-B5-5p MIMAT0025865 Bovine leukemia miR-B5-5p 14 20
mml-miR-4650 MIMAT0024344 Macaca mulatta miR-4650 14 20
tca-miR-3877-5p MIMAT0018846 Tribolium castaneum miR-3877-5p 14 20
hsa-miR-3667-3p MIMAT0018090 Homo sapiens miR-3667-3p 14 20
tgu-miR-2961 MIMAT0014461 Taeniopygia guttata miR-2961 14 20
ssc-miR-9816-3p MIMAT0037034 Sus scrofa miR-9816-3p 12 80
chi-miR-1248-5p MIMAT0035920 Capra hircus miR-1248-5p 12 80
rno-miR-3084a-5p MIMAT0035739 Rattus norvegicus miR-3084a-5p 12 80
nve-miR-9429-5p MIMAT0035388 Nematostella vectensis miR-9429-5p 12 80
eca-miR-9064 MIMAT0034609 Equus caballus miR-9064 12 80
cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823 12 80
atr-miR8610.1 MIMAT0033901 Amborella trichopoda miR8610.1 12 80
str-miR-252b-3p MIMAT0033371 Strongyloides ratti miR-252b-3p 12 80
bbe-miR-129b-5p MIMAT0031584 Branchiostoma belcheri miR-129b-5p 12 80
prd-miR-7871-5p MIMAT0030486 Panagrellus redivivus miR-7871-5p 12 80
bdi-miR7723b-3p MIMAT0030255 Brachypodium distachyon miR7723b-3p 12 80
mmu-miR-7686-5p MIMAT0029898 Mus musculus miR-7686-5p 12 80
lja-miR7530 MIMAT0029353 Lotus japonicus miR7530 12 80
mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p 12 80
mml-miR-7166-3p MIMAT0028267 Macaca mulatta miR-7166-3p 12 80
mmu-miR-7077-3p MIMAT0028061 Mus musculus miR-7077-3p 12 80
mmu-miR-7054-5p MIMAT0028012 Mus musculus miR-7054-5p 12 80
mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p 12 80
mmu-miR-6983-5p MIMAT0027868 Mus musculus miR-6983-5p 12 80
mmu-miR-6940-3p MIMAT0027781 Mus musculus miR-6940-3p 12 80
mmu-miR-6909-3p MIMAT0027719 Mus musculus miR-6909-3p 12 80
hsa-miR-6876-5p MIMAT0027652 Homo sapiens miR-6876-5p 12 80
gga-miR-6667-5p MIMAT0025768 Gallus gallus miR-6667-5p 12 80
gga-miR-6597-3p MIMAT0025692 Gallus gallus miR-6597-3p 12 80
hsa-miR-6125 MIMAT0024598 Homo sapiens miR-6125 12 80
hsa-miR-5581-5p MIMAT0022275 Homo sapiens miR-5581-5p 12 80
hsa-miR-5196-5p MIMAT0021128 Homo sapiens miR-5196-5p 12 80
bfl-miR-129b MIMAT0020080 Branchiostoma floridae miR-129b 12 80
hsa-miR-4747-5p MIMAT0019882 Homo sapiens miR-4747-5p 12 80
hsa-miR-4724-3p MIMAT0019842 Homo sapiens miR-4724-3p 12 80
hsa-miR-4476 MIMAT0019003 Homo sapiens miR-4476 12 80
gma-miR4386 MIMAT0018298 Glycine max miR4386 12 80
tca-miR-3905-5p MIMAT0018913 Tribolium castaneum miR-3905-5p 12 80
hsa-miR-4297 MIMAT0016846 Homo sapiens miR-4297 12 80
cin-miR-4162-3p MIMAT0016769 Ciona intestinalis miR-4162-3p 12 80
ppy-miR-1248 MIMAT0016173 Pongo pygmaeus miR-1248 12 80
tgu-miR-2996 MIMAT0014600 Taeniopygia guttata miR-2996 12 80
mml-miR-524-3p MIMAT0026950 Macaca mulatta miR-524-3p 12 80
iltv-miR-I2 MIMAT0012725 Infectious laryngotracheitis miR-I2 12 80
bta-miR-1248 MIMAT0009972 Bos taurus miR-1248 12 80
ptr-miR-1248 MIMAT0007974 Pan troglodytes miR-1248 12 80
oan-miR-1393 MIMAT0007191 Ornithorhynchus anatinus miR-1393 12 80
hsa-miR-1248 MIMAT0005900 Homo sapiens miR-1248 12 80
ppt-miR902g-3p MIMAT0005078 Physcomitrella patens miR902g-3p 12 80
ppt-miR902e-3p MIMAT0005074 Physcomitrella patens miR902e-3p 12 80
ppt-miR902d-3p MIMAT0005072 Physcomitrella patens miR902d-3p 12 80
ppt-miR902c-3p MIMAT0005070 Physcomitrella patens miR902c-3p 12 80
ppt-miR902b-3p MIMAT0004373 Physcomitrella patens miR902b-3p 12 80
ppt-miR902a-3p MIMAT0004372 Physcomitrella patens miR902a-3p 12 80
ath-miR417 MIMAT0001325 Arabidopsis thaliana miR417 12 80
>ssc-miR-9813-5p MIMAT0037031 Sus scrofa miR-9813-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaaggt 7
|||||||
Sbjct: 2 ggaaggt 8
>sma-miR-8465-3p MIMAT0033650 Schistosoma mansoni miR-8465-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaaggt 7
|||||||
Sbjct: 1 ggaaggt 7
>mmu-miR-7685-5p MIMAT0029896 Mus musculus miR-7685-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaaggt 7
|||||||
Sbjct: 7 ggaaggt 1
>blv-miR-B5-5p MIMAT0025865 Bovine leukemia miR-B5-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaaggt 7
|||||||
Sbjct: 2 ggaaggt 8
>mml-miR-4650 MIMAT0024344 Macaca mulatta miR-4650
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaaggt 7
|||||||
Sbjct: 2 ggaaggt 8
>tca-miR-3877-5p MIMAT0018846 Tribolium castaneum miR-3877-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaaggt 7
|||||||
Sbjct: 7 ggaaggt 1
>hsa-miR-3667-3p MIMAT0018090 Homo sapiens miR-3667-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggaaggt 7
|||||||
Sbjct: 7 ggaaggt 1
>tgu-miR-2961 MIMAT0014461 Taeniopygia guttata miR-2961
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggaaggt 7
|||||||
Sbjct: 2 ggaaggt 8
>ssc-miR-9816-3p MIMAT0037034 Sus scrofa miR-9816-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>chi-miR-1248-5p MIMAT0035920 Capra hircus miR-1248-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 6 gaaggt 1
>rno-miR-3084a-5p MIMAT0035739 Rattus norvegicus miR-3084a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 3 gaaggt 8
>nve-miR-9429-5p MIMAT0035388 Nematostella vectensis miR-9429-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 6 gaaggt 1
>eca-miR-9064 MIMAT0034609 Equus caballus miR-9064
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 3 gaaggt 8
>cfa-miR-8823 MIMAT0034313 Canis familiaris miR-8823
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 8 ggaagg 3
>atr-miR8610.1 MIMAT0033901 Amborella trichopoda miR8610.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 6 gaaggt 1
>str-miR-252b-3p MIMAT0033371 Strongyloides ratti miR-252b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 6 gaaggt 1
>bbe-miR-129b-5p MIMAT0031584 Branchiostoma belcheri miR-129b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 6 gaaggt 1
>prd-miR-7871-5p MIMAT0030486 Panagrellus redivivus miR-7871-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 2 gaaggt 7
>bdi-miR7723b-3p MIMAT0030255 Brachypodium distachyon
miR7723b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 3 gaaggt 8
>mmu-miR-7686-5p MIMAT0029898 Mus musculus miR-7686-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 6 ggaagg 1
>lja-miR7530 MIMAT0029353 Lotus japonicus miR7530
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 6 ggaagg 1
>mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>mml-miR-7166-3p MIMAT0028267 Macaca mulatta miR-7166-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>mmu-miR-7077-3p MIMAT0028061 Mus musculus miR-7077-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 6 ggaagg 1
>mmu-miR-7054-5p MIMAT0028012 Mus musculus miR-7054-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>mmu-miR-6983-5p MIMAT0027868 Mus musculus miR-6983-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>mmu-miR-6940-3p MIMAT0027781 Mus musculus miR-6940-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 8 gaaggt 3
>mmu-miR-6909-3p MIMAT0027719 Mus musculus miR-6909-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 8 ggaagg 3
>hsa-miR-6876-5p MIMAT0027652 Homo sapiens miR-6876-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>gga-miR-6667-5p MIMAT0025768 Gallus gallus miR-6667-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>gga-miR-6597-3p MIMAT0025692 Gallus gallus miR-6597-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 6 ggaagg 1
>hsa-miR-6125 MIMAT0024598 Homo sapiens miR-6125
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>hsa-miR-5581-5p MIMAT0022275 Homo sapiens miR-5581-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 8 ggaagg 3
>hsa-miR-5196-5p MIMAT0021128 Homo sapiens miR-5196-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>bfl-miR-129b MIMAT0020080 Branchiostoma floridae miR-129b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 6 gaaggt 1
>hsa-miR-4747-5p MIMAT0019882 Homo sapiens miR-4747-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>hsa-miR-4724-3p MIMAT0019842 Homo sapiens miR-4724-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 8 gaaggt 3
>hsa-miR-4476 MIMAT0019003 Homo sapiens miR-4476
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 3 ggaagg 8
>gma-miR4386 MIMAT0018298 Glycine max miR4386
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 3 gaaggt 8
>tca-miR-3905-5p MIMAT0018913 Tribolium castaneum miR-3905-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 1 ggaagg 6
>hsa-miR-4297 MIMAT0016846 Homo sapiens miR-4297
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 8 ggaagg 3
>cin-miR-4162-3p MIMAT0016769 Ciona intestinalis miR-4162-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 3 gaaggt 8
>ppy-miR-1248 MIMAT0016173 Pongo pygmaeus miR-1248
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 6 gaaggt 1
>tgu-miR-2996 MIMAT0014600 Taeniopygia guttata miR-2996
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaagg 6
||||||
Sbjct: 6 ggaagg 1
>mml-miR-524-3p MIMAT0026950 Macaca mulatta miR-524-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 1 gaaggt 6
>iltv-miR-I2 MIMAT0012725 Infectious laryngotracheitis miR-I2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaagg 6
||||||
Sbjct: 1 ggaagg 6
>bta-miR-1248 MIMAT0009972 Bos taurus miR-1248
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 6 gaaggt 1
>ptr-miR-1248 MIMAT0007974 Pan troglodytes miR-1248
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 6 gaaggt 1
>oan-miR-1393 MIMAT0007191 Ornithorhynchus anatinus miR-1393
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 8 gaaggt 3
>hsa-miR-1248 MIMAT0005900 Homo sapiens miR-1248
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaggt 7
||||||
Sbjct: 6 gaaggt 1
>ppt-miR902g-3p MIMAT0005078 Physcomitrella patens miR902g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 3 gaaggt 8
>ppt-miR902e-3p MIMAT0005074 Physcomitrella patens miR902e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 3 gaaggt 8
>ppt-miR902d-3p MIMAT0005072 Physcomitrella patens miR902d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 3 gaaggt 8
>ppt-miR902c-3p MIMAT0005070 Physcomitrella patens miR902c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 3 gaaggt 8
>ppt-miR902b-3p MIMAT0004373 Physcomitrella patens miR902b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 3 gaaggt 8
>ppt-miR902a-3p MIMAT0004372 Physcomitrella patens miR902a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 3 gaaggt 8
>ath-miR417 MIMAT0001325 Arabidopsis thaliana miR417
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaggt 7
||||||
Sbjct: 1 gaaggt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 105
Number of extensions: 97
Number of successful extensions: 58
Number of sequences better than 100.0: 58
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 58
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)