BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR68
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9294 MIMAT0034955 Eptesicus fuscus miR-9294 14 20
mmu-miR-6995-3p MIMAT0027893 Mus musculus miR-6995-3p 14 20
hsa-miR-4669 MIMAT0019749 Homo sapiens miR-4669 14 20
hsa-miR-3657 MIMAT0018077 Homo sapiens miR-3657 14 20
ame-miR-9895 MIMAT0037300 Apis mellifera miR-9895 12 80
oha-miR-599 MIMAT0036944 Ophiophagus hannah miR-599 12 80
tch-miR-592 MIMAT0036478 Tupaia chinensis miR-592 12 80
chi-miR-592 MIMAT0036280 Capra hircus miR-592 12 80
chi-miR-1197-3p MIMAT0035917 Capra hircus miR-1197-3p 12 80
nve-miR-9445 MIMAT0035406 Nematostella vectensis miR-9445 12 80
efu-miR-592 MIMAT0035159 Eptesicus fuscus miR-592 12 80
efu-miR-9229f MIMAT0034847 Eptesicus fuscus miR-9229f 12 80
eca-miR-9101 MIMAT0034648 Equus caballus miR-9101 12 80
oan-miR-7421-5p MIMAT0028992 Ornithorhynchus anatinus miR-7421-5p 12 80
mmu-miR-6979-3p MIMAT0027861 Mus musculus miR-6979-3p 12 80
mmu-miR-6903-3p MIMAT0027707 Mus musculus miR-6903-3p 12 80
hsa-miR-6774-3p MIMAT0027449 Homo sapiens miR-6774-3p 12 80
ggo-miR-1197 MIMAT0024245 Gorilla gorilla miR-1197 12 80
ggo-miR-592 MIMAT0024198 Gorilla gorilla miR-592 12 80
tur-miR-5731-5p MIMAT0023056 Tetranychus urticae miR-5731-5p 12 80
hsa-miR-4643 MIMAT0019703 Homo sapiens miR-4643 12 80
oar-miR-1197-3p MIMAT0019258 Ovis aries miR-1197-3p 12 80
gma-miR4403 MIMAT0018321 Glycine max miR4403 12 80
tca-miR-3882-5p MIMAT0018860 Tribolium castaneum miR-3882-5p 12 80
cin-miR-4181-5p MIMAT0016794 Ciona intestinalis miR-4181-5p 12 80
rno-miR-3561-5p MIMAT0017830 Rattus norvegicus miR-3561-5p 12 80
ppy-miR-1197 MIMAT0016149 Pongo pygmaeus miR-1197 12 80
ppy-miR-599 MIMAT0016041 Pongo pygmaeus miR-599 12 80
ppy-miR-597 MIMAT0016039 Pongo pygmaeus miR-597 12 80
ppy-miR-592 MIMAT0016035 Pongo pygmaeus miR-592 12 80
mmu-miR-3069-3p MIMAT0014845 Mus musculus miR-3069-3p 12 80
zma-miR164e-3p MIMAT0015317 Zea mays miR164e-3p 12 80
eca-miR-1197 MIMAT0013125 Equus caballus miR-1197 12 80
eca-miR-592 MIMAT0012946 Equus caballus miR-592 12 80
rno-miR-592 MIMAT0012834 Rattus norvegicus miR-592 12 80
mmu-miR-599 MIMAT0012772 Mus musculus miR-599 12 80
mdo-miR-599-3p MIMAT0012765 Monodelphis domestica miR-599-3p 12 80
bta-miR-1197 MIMAT0009966 Bos taurus miR-1197 12 80
cfa-miR-599 MIMAT0009919 Canis familiaris miR-599 12 80
cfa-miR-592 MIMAT0009918 Canis familiaris miR-592 12 80
mmu-miR-1970 MIMAT0009444 Mus musculus miR-1970 12 80
bta-miR-599 MIMAT0009354 Bos taurus miR-599 12 80
bta-miR-592 MIMAT0009353 Bos taurus miR-592 12 80
ptr-miR-599 MIMAT0008268 Pan troglodytes miR-599 12 80
ptr-miR-597 MIMAT0008266 Pan troglodytes miR-597 12 80
ptr-miR-592 MIMAT0008263 Pan troglodytes miR-592 12 80
ptr-miR-1197 MIMAT0007954 Pan troglodytes miR-1197 12 80
mml-miR-599-3p MIMAT0006456 Macaca mulatta miR-599-3p 12 80
mml-miR-597 MIMAT0006454 Macaca mulatta miR-597 12 80
mml-miR-592-5p MIMAT0006452 Macaca mulatta miR-592-5p 12 80
hsa-miR-1197 MIMAT0005955 Homo sapiens miR-1197 12 80
mmu-miR-1197-3p MIMAT0005858 Mus musculus miR-1197-3p 12 80
mmu-miR-592-5p MIMAT0003730 Mus musculus miR-592-5p 12 80
hsa-miR-599 MIMAT0003267 Homo sapiens miR-599 12 80
hsa-miR-597-5p MIMAT0003265 Homo sapiens miR-597-5p 12 80
hsa-miR-592 MIMAT0003260 Homo sapiens miR-592 12 80
>efu-miR-9294 MIMAT0034955 Eptesicus fuscus miR-9294
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggacaca 7
|||||||
Sbjct: 8 ggacaca 2
>mmu-miR-6995-3p MIMAT0027893 Mus musculus miR-6995-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggacaca 7
|||||||
Sbjct: 7 ggacaca 1
>hsa-miR-4669 MIMAT0019749 Homo sapiens miR-4669
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggacaca 7
|||||||
Sbjct: 7 ggacaca 1
>hsa-miR-3657 MIMAT0018077 Homo sapiens miR-3657
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggacaca 7
|||||||
Sbjct: 7 ggacaca 1
>ame-miR-9895 MIMAT0037300 Apis mellifera miR-9895
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggacac 6
||||||
Sbjct: 8 ggacac 3
>oha-miR-599 MIMAT0036944 Ophiophagus hannah miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>tch-miR-592 MIMAT0036478 Tupaia chinensis miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
>chi-miR-592 MIMAT0036280 Capra hircus miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
>chi-miR-1197-3p MIMAT0035917 Capra hircus miR-1197-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacac 6
||||||
Sbjct: 3 ggacac 8
>nve-miR-9445 MIMAT0035406 Nematostella vectensis miR-9445
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>efu-miR-592 MIMAT0035159 Eptesicus fuscus miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
>efu-miR-9229f MIMAT0034847 Eptesicus fuscus miR-9229f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 6 gacaca 1
>eca-miR-9101 MIMAT0034648 Equus caballus miR-9101
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
>oan-miR-7421-5p MIMAT0028992 Ornithorhynchus anatinus
miR-7421-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 6 gacaca 1
>mmu-miR-6979-3p MIMAT0027861 Mus musculus miR-6979-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
>mmu-miR-6903-3p MIMAT0027707 Mus musculus miR-6903-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>hsa-miR-6774-3p MIMAT0027449 Homo sapiens miR-6774-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggacac 6
||||||
Sbjct: 8 ggacac 3
>ggo-miR-1197 MIMAT0024245 Gorilla gorilla miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacac 6
||||||
Sbjct: 3 ggacac 8
>ggo-miR-592 MIMAT0024198 Gorilla gorilla miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
>tur-miR-5731-5p MIMAT0023056 Tetranychus urticae miR-5731-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacaca 7
||||||
Sbjct: 1 gacaca 6
>hsa-miR-4643 MIMAT0019703 Homo sapiens miR-4643
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacaca 7
||||||
Sbjct: 1 gacaca 6
>oar-miR-1197-3p MIMAT0019258 Ovis aries miR-1197-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacac 6
||||||
Sbjct: 3 ggacac 8
>gma-miR4403 MIMAT0018321 Glycine max miR4403
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacac 6
||||||
Sbjct: 3 ggacac 8
>tca-miR-3882-5p MIMAT0018860 Tribolium castaneum miR-3882-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacaca 7
||||||
Sbjct: 3 gacaca 8
>cin-miR-4181-5p MIMAT0016794 Ciona intestinalis miR-4181-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>rno-miR-3561-5p MIMAT0017830 Rattus norvegicus miR-3561-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>ppy-miR-1197 MIMAT0016149 Pongo pygmaeus miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacac 6
||||||
Sbjct: 3 ggacac 8
>ppy-miR-599 MIMAT0016041 Pongo pygmaeus miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>ppy-miR-597 MIMAT0016039 Pongo pygmaeus miR-597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 6 gacaca 1
>ppy-miR-592 MIMAT0016035 Pongo pygmaeus miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
>mmu-miR-3069-3p MIMAT0014845 Mus musculus miR-3069-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacac 6
||||||
Sbjct: 3 ggacac 8
>zma-miR164e-3p MIMAT0015317 Zea mays miR164e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>eca-miR-1197 MIMAT0013125 Equus caballus miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacac 6
||||||
Sbjct: 3 ggacac 8
>eca-miR-592 MIMAT0012946 Equus caballus miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
>rno-miR-592 MIMAT0012834 Rattus norvegicus miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>mmu-miR-599 MIMAT0012772 Mus musculus miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
>mdo-miR-599-3p MIMAT0012765 Monodelphis domestica miR-599-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>bta-miR-1197 MIMAT0009966 Bos taurus miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacac 6
||||||
Sbjct: 3 ggacac 8
>cfa-miR-599 MIMAT0009919 Canis familiaris miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>cfa-miR-592 MIMAT0009918 Canis familiaris miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>mmu-miR-1970 MIMAT0009444 Mus musculus miR-1970
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 6 gacaca 1
>bta-miR-599 MIMAT0009354 Bos taurus miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>bta-miR-592 MIMAT0009353 Bos taurus miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>ptr-miR-599 MIMAT0008268 Pan troglodytes miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>ptr-miR-597 MIMAT0008266 Pan troglodytes miR-597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 6 gacaca 1
>ptr-miR-592 MIMAT0008263 Pan troglodytes miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
>ptr-miR-1197 MIMAT0007954 Pan troglodytes miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacac 6
||||||
Sbjct: 3 ggacac 8
>mml-miR-599-3p MIMAT0006456 Macaca mulatta miR-599-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>mml-miR-597 MIMAT0006454 Macaca mulatta miR-597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 6 gacaca 1
>mml-miR-592-5p MIMAT0006452 Macaca mulatta miR-592-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
>hsa-miR-1197 MIMAT0005955 Homo sapiens miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacac 6
||||||
Sbjct: 3 ggacac 8
>mmu-miR-1197-3p MIMAT0005858 Mus musculus miR-1197-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggacac 6
||||||
Sbjct: 3 ggacac 8
>mmu-miR-592-5p MIMAT0003730 Mus musculus miR-592-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>hsa-miR-599 MIMAT0003267 Homo sapiens miR-599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 8 gacaca 3
>hsa-miR-597-5p MIMAT0003265 Homo sapiens miR-597-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 6 gacaca 1
>hsa-miR-592 MIMAT0003260 Homo sapiens miR-592
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacaca 7
||||||
Sbjct: 7 gacaca 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 68
Number of extensions: 64
Number of successful extensions: 56
Number of sequences better than 100.0: 56
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 56
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)