BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wssv-miR68
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

efu-miR-9294 MIMAT0034955 Eptesicus fuscus miR-9294                    14      20
mmu-miR-6995-3p MIMAT0027893 Mus musculus miR-6995-3p                  14      20
hsa-miR-4669 MIMAT0019749 Homo sapiens miR-4669                        14      20
hsa-miR-3657 MIMAT0018077 Homo sapiens miR-3657                        14      20
ame-miR-9895 MIMAT0037300 Apis mellifera miR-9895                      12      80
oha-miR-599 MIMAT0036944 Ophiophagus hannah miR-599                    12      80
tch-miR-592 MIMAT0036478 Tupaia chinensis miR-592                      12      80
chi-miR-592 MIMAT0036280 Capra hircus miR-592                          12      80
chi-miR-1197-3p MIMAT0035917 Capra hircus miR-1197-3p                  12      80
nve-miR-9445 MIMAT0035406 Nematostella vectensis miR-9445              12      80
efu-miR-592 MIMAT0035159 Eptesicus fuscus miR-592                      12      80
efu-miR-9229f MIMAT0034847 Eptesicus fuscus miR-9229f                  12      80
eca-miR-9101 MIMAT0034648 Equus caballus miR-9101                      12      80
oan-miR-7421-5p MIMAT0028992 Ornithorhynchus anatinus miR-7421-5p      12      80
mmu-miR-6979-3p MIMAT0027861 Mus musculus miR-6979-3p                  12      80
mmu-miR-6903-3p MIMAT0027707 Mus musculus miR-6903-3p                  12      80
hsa-miR-6774-3p MIMAT0027449 Homo sapiens miR-6774-3p                  12      80
ggo-miR-1197 MIMAT0024245 Gorilla gorilla miR-1197                     12      80
ggo-miR-592 MIMAT0024198 Gorilla gorilla miR-592                       12      80
tur-miR-5731-5p MIMAT0023056 Tetranychus urticae miR-5731-5p           12      80
hsa-miR-4643 MIMAT0019703 Homo sapiens miR-4643                        12      80
oar-miR-1197-3p MIMAT0019258 Ovis aries miR-1197-3p                    12      80
gma-miR4403 MIMAT0018321 Glycine max miR4403                           12      80
tca-miR-3882-5p MIMAT0018860 Tribolium castaneum miR-3882-5p           12      80
cin-miR-4181-5p MIMAT0016794 Ciona intestinalis miR-4181-5p            12      80
rno-miR-3561-5p MIMAT0017830 Rattus norvegicus miR-3561-5p             12      80
ppy-miR-1197 MIMAT0016149 Pongo pygmaeus miR-1197                      12      80
ppy-miR-599 MIMAT0016041 Pongo pygmaeus miR-599                        12      80
ppy-miR-597 MIMAT0016039 Pongo pygmaeus miR-597                        12      80
ppy-miR-592 MIMAT0016035 Pongo pygmaeus miR-592                        12      80
mmu-miR-3069-3p MIMAT0014845 Mus musculus miR-3069-3p                  12      80
zma-miR164e-3p MIMAT0015317 Zea mays miR164e-3p                        12      80
eca-miR-1197 MIMAT0013125 Equus caballus miR-1197                      12      80
eca-miR-592 MIMAT0012946 Equus caballus miR-592                        12      80
rno-miR-592 MIMAT0012834 Rattus norvegicus miR-592                     12      80
mmu-miR-599 MIMAT0012772 Mus musculus miR-599                          12      80
mdo-miR-599-3p MIMAT0012765 Monodelphis domestica miR-599-3p           12      80
bta-miR-1197 MIMAT0009966 Bos taurus miR-1197                          12      80
cfa-miR-599 MIMAT0009919 Canis familiaris miR-599                      12      80
cfa-miR-592 MIMAT0009918 Canis familiaris miR-592                      12      80
mmu-miR-1970 MIMAT0009444 Mus musculus miR-1970                        12      80
bta-miR-599 MIMAT0009354 Bos taurus miR-599                            12      80
bta-miR-592 MIMAT0009353 Bos taurus miR-592                            12      80
ptr-miR-599 MIMAT0008268 Pan troglodytes miR-599                       12      80
ptr-miR-597 MIMAT0008266 Pan troglodytes miR-597                       12      80
ptr-miR-592 MIMAT0008263 Pan troglodytes miR-592                       12      80
ptr-miR-1197 MIMAT0007954 Pan troglodytes miR-1197                     12      80
mml-miR-599-3p MIMAT0006456 Macaca mulatta miR-599-3p                  12      80
mml-miR-597 MIMAT0006454 Macaca mulatta miR-597                        12      80
mml-miR-592-5p MIMAT0006452 Macaca mulatta miR-592-5p                  12      80
hsa-miR-1197 MIMAT0005955 Homo sapiens miR-1197                        12      80
mmu-miR-1197-3p MIMAT0005858 Mus musculus miR-1197-3p                  12      80
mmu-miR-592-5p MIMAT0003730 Mus musculus miR-592-5p                    12      80
hsa-miR-599 MIMAT0003267 Homo sapiens miR-599                          12      80
hsa-miR-597-5p MIMAT0003265 Homo sapiens miR-597-5p                    12      80
hsa-miR-592 MIMAT0003260 Homo sapiens miR-592                          12      80
>efu-miR-9294 MIMAT0034955 Eptesicus fuscus miR-9294
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggacaca 7
         |||||||
Sbjct: 8 ggacaca 2
>mmu-miR-6995-3p MIMAT0027893 Mus musculus miR-6995-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggacaca 7
         |||||||
Sbjct: 7 ggacaca 1
>hsa-miR-4669 MIMAT0019749 Homo sapiens miR-4669
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggacaca 7
         |||||||
Sbjct: 7 ggacaca 1
>hsa-miR-3657 MIMAT0018077 Homo sapiens miR-3657
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggacaca 7
         |||||||
Sbjct: 7 ggacaca 1
>ame-miR-9895 MIMAT0037300 Apis mellifera miR-9895
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 8 ggacac 3
>oha-miR-599 MIMAT0036944 Ophiophagus hannah miR-599
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>tch-miR-592 MIMAT0036478 Tupaia chinensis miR-592
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
>chi-miR-592 MIMAT0036280 Capra hircus miR-592
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
>chi-miR-1197-3p MIMAT0035917 Capra hircus miR-1197-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 3 ggacac 8
>nve-miR-9445 MIMAT0035406 Nematostella vectensis miR-9445
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>efu-miR-592 MIMAT0035159 Eptesicus fuscus miR-592
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
>efu-miR-9229f MIMAT0034847 Eptesicus fuscus miR-9229f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 6 gacaca 1
>eca-miR-9101 MIMAT0034648 Equus caballus miR-9101
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
>oan-miR-7421-5p MIMAT0028992 Ornithorhynchus anatinus
         miR-7421-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 6 gacaca 1
>mmu-miR-6979-3p MIMAT0027861 Mus musculus miR-6979-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
>mmu-miR-6903-3p MIMAT0027707 Mus musculus miR-6903-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>hsa-miR-6774-3p MIMAT0027449 Homo sapiens miR-6774-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 8 ggacac 3
>ggo-miR-1197 MIMAT0024245 Gorilla gorilla miR-1197
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 3 ggacac 8
>ggo-miR-592 MIMAT0024198 Gorilla gorilla miR-592
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
>tur-miR-5731-5p MIMAT0023056 Tetranychus urticae miR-5731-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 1 gacaca 6
>hsa-miR-4643 MIMAT0019703 Homo sapiens miR-4643
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 1 gacaca 6
>oar-miR-1197-3p MIMAT0019258 Ovis aries miR-1197-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 3 ggacac 8
>gma-miR4403 MIMAT0018321 Glycine max miR4403
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 3 ggacac 8
>tca-miR-3882-5p MIMAT0018860 Tribolium castaneum miR-3882-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 3 gacaca 8
>cin-miR-4181-5p MIMAT0016794 Ciona intestinalis miR-4181-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>rno-miR-3561-5p MIMAT0017830 Rattus norvegicus miR-3561-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>ppy-miR-1197 MIMAT0016149 Pongo pygmaeus miR-1197
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 3 ggacac 8
>ppy-miR-599 MIMAT0016041 Pongo pygmaeus miR-599
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>ppy-miR-597 MIMAT0016039 Pongo pygmaeus miR-597
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 6 gacaca 1
>ppy-miR-592 MIMAT0016035 Pongo pygmaeus miR-592
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
>mmu-miR-3069-3p MIMAT0014845 Mus musculus miR-3069-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 3 ggacac 8
>zma-miR164e-3p MIMAT0015317 Zea mays miR164e-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>eca-miR-1197 MIMAT0013125 Equus caballus miR-1197
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 3 ggacac 8
>eca-miR-592 MIMAT0012946 Equus caballus miR-592
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
>rno-miR-592 MIMAT0012834 Rattus norvegicus miR-592
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>mmu-miR-599 MIMAT0012772 Mus musculus miR-599
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
>mdo-miR-599-3p MIMAT0012765 Monodelphis domestica miR-599-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>bta-miR-1197 MIMAT0009966 Bos taurus miR-1197
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 3 ggacac 8
>cfa-miR-599 MIMAT0009919 Canis familiaris miR-599
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>cfa-miR-592 MIMAT0009918 Canis familiaris miR-592
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>mmu-miR-1970 MIMAT0009444 Mus musculus miR-1970
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 6 gacaca 1
>bta-miR-599 MIMAT0009354 Bos taurus miR-599
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>bta-miR-592 MIMAT0009353 Bos taurus miR-592
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>ptr-miR-599 MIMAT0008268 Pan troglodytes miR-599
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>ptr-miR-597 MIMAT0008266 Pan troglodytes miR-597
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 6 gacaca 1
>ptr-miR-592 MIMAT0008263 Pan troglodytes miR-592
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
>ptr-miR-1197 MIMAT0007954 Pan troglodytes miR-1197
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 3 ggacac 8
>mml-miR-599-3p MIMAT0006456 Macaca mulatta miR-599-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>mml-miR-597 MIMAT0006454 Macaca mulatta miR-597
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 6 gacaca 1
>mml-miR-592-5p MIMAT0006452 Macaca mulatta miR-592-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
>hsa-miR-1197 MIMAT0005955 Homo sapiens miR-1197
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 3 ggacac 8
>mmu-miR-1197-3p MIMAT0005858 Mus musculus miR-1197-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggacac 6
         ||||||
Sbjct: 3 ggacac 8
>mmu-miR-592-5p MIMAT0003730 Mus musculus miR-592-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>hsa-miR-599 MIMAT0003267 Homo sapiens miR-599
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 8 gacaca 3
>hsa-miR-597-5p MIMAT0003265 Homo sapiens miR-597-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 6 gacaca 1
>hsa-miR-592 MIMAT0003260 Homo sapiens miR-592
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gacaca 7
         ||||||
Sbjct: 7 gacaca 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 68
Number of extensions: 64
Number of successful extensions: 56
Number of sequences better than 100.0: 56
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 56
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)