BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-7-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

eca-miR-9055 MIMAT0034599 Equus caballus miR-9055                      14      27
ppc-miR-8364s-3p MIMAT0033271 Pristionchus pacificus miR-8364s-3p      14      27
ppc-miR-8364l-3p MIMAT0033265 Pristionchus pacificus miR-8364l-3p      14      27
ppc-miR-8364r-3p MIMAT0033263 Pristionchus pacificus miR-8364r-3p      14      27
bbe-miR-281-5p MIMAT0031660 Branchiostoma belcheri miR-281-5p          14      27
mmu-miR-7216-5p MIMAT0028400 Mus musculus miR-7216-5p                  14      27
mmu-miR-7063-3p MIMAT0028031 Mus musculus miR-7063-3p                  14      27
mmu-miR-6973b-3p MIMAT0027909 Mus musculus miR-6973b-3p                14      27
asu-miR-5349-5p MIMAT0021550 Ascaris suum miR-5349-5p                  14      27
pma-miR-22b-5p MIMAT0019400 Petromyzon marinus miR-22b-5p              14      27
aae-miR-306-3p MIMAT0014230 Aedes aegypti miR-306-3p                   14      27
hsa-miR-2278 MIMAT0011778 Homo sapiens miR-2278                        14      27
rrv-miR-rR1-7-5p MIMAT0004415 Rhesus monkey miR-rR1-7-5p               14      27
ptc-miR473b MIMAT0002063 Populus trichocarpa miR473b                   14      27
zma-miR156j-3p MIMAT0015175 Zea mays miR156j-3p                        14      27
>eca-miR-9055 MIMAT0034599 Equus caballus miR-9055
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gagagca 8
         |||||||
Sbjct: 2 gagagca 8
>ppc-miR-8364s-3p MIMAT0033271 Pristionchus pacificus
         miR-8364s-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gagagca 8
         |||||||
Sbjct: 2 gagagca 8
>ppc-miR-8364l-3p MIMAT0033265 Pristionchus pacificus
         miR-8364l-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gagagca 8
         |||||||
Sbjct: 2 gagagca 8
>ppc-miR-8364r-3p MIMAT0033263 Pristionchus pacificus
         miR-8364r-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gagagca 8
         |||||||
Sbjct: 1 gagagca 7
>bbe-miR-281-5p MIMAT0031660 Branchiostoma belcheri miR-281-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggagagc 7
         |||||||
Sbjct: 2 ggagagc 8
>mmu-miR-7216-5p MIMAT0028400 Mus musculus miR-7216-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggagagc 7
         |||||||
Sbjct: 2 ggagagc 8
>mmu-miR-7063-3p MIMAT0028031 Mus musculus miR-7063-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagagca 8
         |||||||
Sbjct: 7 gagagca 1
>mmu-miR-6973b-3p MIMAT0027909 Mus musculus miR-6973b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagagca 8
         |||||||
Sbjct: 7 gagagca 1
>asu-miR-5349-5p MIMAT0021550 Ascaris suum miR-5349-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagagca 8
         |||||||
Sbjct: 8 gagagca 2
>pma-miR-22b-5p MIMAT0019400 Petromyzon marinus miR-22b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggagagc 7
         |||||||
Sbjct: 8 ggagagc 2
>aae-miR-306-3p MIMAT0014230 Aedes aegypti miR-306-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gagagca 8
         |||||||
Sbjct: 1 gagagca 7
>hsa-miR-2278 MIMAT0011778 Homo sapiens miR-2278
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gagagca 8
         |||||||
Sbjct: 1 gagagca 7
>rrv-miR-rR1-7-5p MIMAT0004415 Rhesus monkey miR-rR1-7-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggagagc 7
         |||||||
Sbjct: 2 ggagagc 8
>ptc-miR473b MIMAT0002063 Populus trichocarpa miR473b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggagagc 7
         |||||||
Sbjct: 7 ggagagc 1
>zma-miR156j-3p MIMAT0015175 Zea mays miR156j-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagagca 8
         |||||||
Sbjct: 7 gagagca 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 214
Number of extensions: 199
Number of successful extensions: 140
Number of sequences better than 100.0: 15
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)