BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-9-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR7756-3p MIMAT0030257 Brachypodium distachyon miR7756-3p 14 20
mtr-miR5298d MIMAT0021372 Medicago truncatula miR5298d 14 20
hsa-miR-1273f MIMAT0020601 Homo sapiens miR-1273f 14 20
gma-miR2118b-5p MIMAT0022982 Glycine max miR2118b-5p 14 20
gma-miR2118a-5p MIMAT0022981 Glycine max miR2118a-5p 14 20
tgu-miR-139-3p MIMAT0014626 Taeniopygia guttata miR-139-3p 14 20
eca-miR-9135 MIMAT0034686 Equus caballus miR-9135 12 80
sma-miR-8468-3p MIMAT0033656 Schistosoma mansoni miR-8468-3p 12 80
ppc-miR-8331-3p MIMAT0033207 Pristionchus pacificus miR-8331-3p 12 80
ppc-miR-8296-5p MIMAT0033105 Pristionchus pacificus miR-8296-5p 12 80
ppc-miR-8261-5p MIMAT0032995 Pristionchus pacificus miR-8261-5p 12 80
ppc-miR-8250d-3p MIMAT0032994 Pristionchus pacificus miR-8250d-3p 12 80
ppc-miR-8250a-2-3p MIMAT0032988 Pristionchus pacificus miR-8250a... 12 80
ppc-miR-8250a-3p MIMAT0032965 Pristionchus pacificus miR-8250a-3p 12 80
ppc-miR-8241-3p MIMAT0032939 Pristionchus pacificus miR-8241-3p 12 80
ppc-miR-2251b-5p MIMAT0032848 Pristionchus pacificus miR-2251b-5p 12 80
cpa-miR8143 MIMAT0031840 Carica papaya miR8143 12 80
bbe-miR-4864-5p MIMAT0031685 Branchiostoma belcheri miR-4864-5p 12 80
ppe-miR5225-3p MIMAT0031549 Prunus persica miR5225-3p 12 80
stu-miR7980b-3p MIMAT0030930 Solanum tuberosum miR7980b-3p 12 80
stu-miR1886i-5p MIMAT0030925 Solanum tuberosum miR1886i-5p 12 80
stu-miR1886g-5p MIMAT0030900 Solanum tuberosum miR1886g-5p 12 80
stu-miR7980a MIMAT0030847 Solanum tuberosum miR7980a 12 80
bdi-miR7772-3p MIMAT0030295 Brachypodium distachyon miR7772-3p 12 80
mes-miR477g MIMAT0029296 Manihot esculenta miR477g 12 80
mes-miR477f MIMAT0029295 Manihot esculenta miR477f 12 80
mmu-miR-6976-3p MIMAT0027855 Mus musculus miR-6976-3p 12 80
hsa-miR-6888-5p MIMAT0027676 Homo sapiens miR-6888-5p 12 80
ptc-miR477d-5p MIMAT0025275 Populus trichocarpa miR477d-5p 12 80
ppe-miR482d-5p MIMAT0031174 Prunus persica miR482d-5p 12 80
aca-miR-5408a-5p MIMAT0022024 Anolis carolinensis miR-5408a-5p 12 80
mmu-miR-5119 MIMAT0020627 Mus musculus miR-5119 12 80
dme-miR-4965-5p MIMAT0020188 Drosophila melanogaster miR-4965-5p 12 80
bfl-miR-4864-5p MIMAT0020097 Branchiostoma floridae miR-4864-5p 12 80
pma-miR-4548 MIMAT0019580 Petromyzon marinus miR-4548 12 80
hsa-miR-3675-3p MIMAT0018099 Homo sapiens miR-3675-3p 12 80
vvi-miR3625-3p MIMAT0018014 Vitis vinifera miR3625-3p 12 80
cin-miR-4088-3p MIMAT0016665 Ciona intestinalis miR-4088-3p 12 80
aly-miR319d-5p MIMAT0017663 Arabidopsis lyrata miR319d-5p 12 80
aly-miR319c-5p MIMAT0017433 Arabidopsis lyrata miR319c-5p 12 80
zma-miR482-5p MIMAT0015361 Zea mays miR482-5p 12 80
bmo-miR-2739 MIMAT0012617 Bombyx mori miR-2739 12 80
cte-miR-2716 MIMAT0013585 Capitella teleta miR-2716 12 80
mmu-miR-1941-5p MIMAT0009405 Mus musculus miR-1941-5p 12 80
vvi-miR477a MIMAT0006575 Vitis vinifera miR477a 12 80
hsa-miR-1270 MIMAT0005924 Homo sapiens miR-1270 12 80
hsa-miR-620 MIMAT0003289 Homo sapiens miR-620 12 80
ptc-miR477b MIMAT0002075 Populus trichocarpa miR477b 12 80
ptc-miR477a-5p MIMAT0002074 Populus trichocarpa miR477a-5p 12 80
>bdi-miR7756-3p MIMAT0030257 Brachypodium distachyon miR7756-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagatg 7
|||||||
Sbjct: 2 ggagatg 8
>mtr-miR5298d MIMAT0021372 Medicago truncatula miR5298d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagatg 7
|||||||
Sbjct: 2 ggagatg 8
>hsa-miR-1273f MIMAT0020601 Homo sapiens miR-1273f
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagatg 7
|||||||
Sbjct: 1 ggagatg 7
>gma-miR2118b-5p MIMAT0022982 Glycine max miR2118b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagatg 7
|||||||
Sbjct: 1 ggagatg 7
>gma-miR2118a-5p MIMAT0022981 Glycine max miR2118a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagatg 7
|||||||
Sbjct: 1 ggagatg 7
>tgu-miR-139-3p MIMAT0014626 Taeniopygia guttata miR-139-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagatg 7
|||||||
Sbjct: 2 ggagatg 8
>eca-miR-9135 MIMAT0034686 Equus caballus miR-9135
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>sma-miR-8468-3p MIMAT0033656 Schistosoma mansoni miR-8468-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagat 6
||||||
Sbjct: 3 ggagat 8
>ppc-miR-8331-3p MIMAT0033207 Pristionchus pacificus miR-8331-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>ppc-miR-8296-5p MIMAT0033105 Pristionchus pacificus miR-8296-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatg 7
||||||
Sbjct: 3 gagatg 8
>ppc-miR-8261-5p MIMAT0032995 Pristionchus pacificus miR-8261-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>ppc-miR-8250d-3p MIMAT0032994 Pristionchus pacificus
miR-8250d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>ppc-miR-8250a-2-3p MIMAT0032988 Pristionchus pacificus
miR-8250a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>ppc-miR-8250a-3p MIMAT0032965 Pristionchus pacificus
miR-8250a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>ppc-miR-8241-3p MIMAT0032939 Pristionchus pacificus miR-8241-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 8 ggagat 3
>ppc-miR-2251b-5p MIMAT0032848 Pristionchus pacificus
miR-2251b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>cpa-miR8143 MIMAT0031840 Carica papaya miR8143
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatg 7
||||||
Sbjct: 3 gagatg 8
>bbe-miR-4864-5p MIMAT0031685 Branchiostoma belcheri miR-4864-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagat 6
||||||
Sbjct: 3 ggagat 8
>ppe-miR5225-3p MIMAT0031549 Prunus persica miR5225-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagatg 7
||||||
Sbjct: 7 gagatg 2
>stu-miR7980b-3p MIMAT0030930 Solanum tuberosum miR7980b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatg 7
||||||
Sbjct: 1 gagatg 6
>stu-miR1886i-5p MIMAT0030925 Solanum tuberosum miR1886i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatg 7
||||||
Sbjct: 3 gagatg 8
>stu-miR1886g-5p MIMAT0030900 Solanum tuberosum miR1886g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatg 7
||||||
Sbjct: 1 gagatg 6
>stu-miR7980a MIMAT0030847 Solanum tuberosum miR7980a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatg 7
||||||
Sbjct: 3 gagatg 8
>bdi-miR7772-3p MIMAT0030295 Brachypodium distachyon miR7772-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 8 ggagat 3
>mes-miR477g MIMAT0029296 Manihot esculenta miR477g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>mes-miR477f MIMAT0029295 Manihot esculenta miR477f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>mmu-miR-6976-3p MIMAT0027855 Mus musculus miR-6976-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>hsa-miR-6888-5p MIMAT0027676 Homo sapiens miR-6888-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagat 6
||||||
Sbjct: 3 ggagat 8
>ptc-miR477d-5p MIMAT0025275 Populus trichocarpa miR477d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>ppe-miR482d-5p MIMAT0031174 Prunus persica miR482d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatg 7
||||||
Sbjct: 1 gagatg 6
>aca-miR-5408a-5p MIMAT0022024 Anolis carolinensis miR-5408a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 8 ggagat 3
>mmu-miR-5119 MIMAT0020627 Mus musculus miR-5119
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagatg 7
||||||
Sbjct: 6 gagatg 1
>dme-miR-4965-5p MIMAT0020188 Drosophila melanogaster
miR-4965-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatg 7
||||||
Sbjct: 1 gagatg 6
>bfl-miR-4864-5p MIMAT0020097 Branchiostoma floridae miR-4864-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagat 6
||||||
Sbjct: 3 ggagat 8
>pma-miR-4548 MIMAT0019580 Petromyzon marinus miR-4548
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagatg 7
||||||
Sbjct: 8 gagatg 3
>hsa-miR-3675-3p MIMAT0018099 Homo sapiens miR-3675-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagatg 7
||||||
Sbjct: 6 gagatg 1
>vvi-miR3625-3p MIMAT0018014 Vitis vinifera miR3625-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagat 6
||||||
Sbjct: 3 ggagat 8
>cin-miR-4088-3p MIMAT0016665 Ciona intestinalis miR-4088-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>aly-miR319d-5p MIMAT0017663 Arabidopsis lyrata miR319d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagat 6
||||||
Sbjct: 1 ggagat 6
>aly-miR319c-5p MIMAT0017433 Arabidopsis lyrata miR319c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagat 6
||||||
Sbjct: 1 ggagat 6
>zma-miR482-5p MIMAT0015361 Zea mays miR482-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagat 6
||||||
Sbjct: 3 ggagat 8
>bmo-miR-2739 MIMAT0012617 Bombyx mori miR-2739
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatg 7
||||||
Sbjct: 1 gagatg 6
>cte-miR-2716 MIMAT0013585 Capitella teleta miR-2716
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagatg 7
||||||
Sbjct: 3 gagatg 8
>mmu-miR-1941-5p MIMAT0009405 Mus musculus miR-1941-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagat 6
||||||
Sbjct: 3 ggagat 8
>vvi-miR477a MIMAT0006575 Vitis vinifera miR477a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>hsa-miR-1270 MIMAT0005924 Homo sapiens miR-1270
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagat 6
||||||
Sbjct: 3 ggagat 8
>hsa-miR-620 MIMAT0003289 Homo sapiens miR-620
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagat 6
||||||
Sbjct: 3 ggagat 8
>ptc-miR477b MIMAT0002075 Populus trichocarpa miR477b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
>ptc-miR477a-5p MIMAT0002074 Populus trichocarpa miR477a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagat 6
||||||
Sbjct: 6 ggagat 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 114
Number of extensions: 108
Number of successful extensions: 49
Number of sequences better than 100.0: 49
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 49
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
