BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b14rc-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B14RC-3p MIMAT0031772 Herpes B miR-B14RC-3p 14 20
mdo-miR-7327-5p MIMAT0028656 Monodelphis domestica miR-7327-5p 14 20
hsa-miR-6887-3p MIMAT0027675 Homo sapiens miR-6887-3p 14 20
gga-miR-6547-3p MIMAT0025598 Gallus gallus miR-6547-3p 14 20
ame-miR-3776 MIMAT0018553 Apis mellifera miR-3776 14 20
hsa-miR-1914-3p MIMAT0007890 Homo sapiens miR-1914-3p 14 20
lja-miR7533b MIMAT0029358 Lotus japonicus miR7533b 12 80
lja-miR7533a MIMAT0029357 Lotus japonicus miR7533a 12 80
lja-miR7520 MIMAT0029335 Lotus japonicus miR7520 12 80
mdo-miR-7366-5p MIMAT0028748 Monodelphis domestica miR-7366-5p 12 80
mdo-miR-7319-5p MIMAT0028638 Monodelphis domestica miR-7319-5p 12 80
mmu-miR-7235-5p MIMAT0028438 Mus musculus miR-7235-5p 12 80
mml-miR-7205-5p MIMAT0028376 Macaca mulatta miR-7205-5p 12 80
mmu-miR-7072-5p MIMAT0028050 Mus musculus miR-7072-5p 12 80
mmu-miR-7070-5p MIMAT0028046 Mus musculus miR-7070-5p 12 80
mmu-miR-7058-5p MIMAT0028020 Mus musculus miR-7058-5p 12 80
mmu-miR-7020-3p MIMAT0027945 Mus musculus miR-7020-3p 12 80
mmu-miR-6927-5p MIMAT0027754 Mus musculus miR-6927-5p 12 80
hsa-miR-6883-5p MIMAT0027666 Homo sapiens miR-6883-5p 12 80
hsa-miR-6826-3p MIMAT0027553 Homo sapiens miR-6826-3p 12 80
hsa-miR-6785-5p MIMAT0027470 Homo sapiens miR-6785-5p 12 80
hsa-miR-6734-5p MIMAT0027369 Homo sapiens miR-6734-5p 12 80
hsa-miR-6515-5p MIMAT0025486 Homo sapiens miR-6515-5p 12 80
hco-miR-5940 MIMAT0023435 Haemonchus contortus miR-5940 12 80
aca-miR-5415 MIMAT0022035 Anolis carolinensis miR-5415 12 80
hsa-miR-4779 MIMAT0019938 Homo sapiens miR-4779 12 80
hsa-miR-4749-3p MIMAT0019886 Homo sapiens miR-4749-3p 12 80
hsa-miR-4728-5p MIMAT0019849 Homo sapiens miR-4728-5p 12 80
hsa-miR-4290 MIMAT0016921 Homo sapiens miR-4290 12 80
mmu-miR-3103-5p MIMAT0014937 Mus musculus miR-3103-5p 12 80
bmo-miR-2756-3p MIMAT0013624 Bombyx mori miR-2756-3p 12 80
bta-miR-2422 MIMAT0011989 Bos taurus miR-2422 12 80
bta-miR-2389 MIMAT0011942 Bos taurus miR-2389 12 80
bta-miR-2328-5p MIMAT0011857 Bos taurus miR-2328-5p 12 80
gga-miR-2127 MIMAT0011203 Gallus gallus miR-2127 12 80
bta-miR-760-5p MIMAT0009372 Bos taurus miR-760-5p 12 80
gga-miR-1611 MIMAT0007477 Gallus gallus miR-1611 12 80
gga-miR-1599 MIMAT0007465 Gallus gallus miR-1599 12 80
oan-miR-802-3p MIMAT0007182 Ornithorhynchus anatinus miR-802-3p 12 80
oan-miR-1343-5p MIMAT0006874 Ornithorhynchus anatinus miR-1343-5p 12 80
rno-miR-760-5p MIMAT0005336 Rattus norvegicus miR-760-5p 12 80
mdv2-miR-M19-5p MIMAT0012541 Mareks disease miR-M19-5p 12 80
ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853 12 80
ppt-miR1211-5p MIMAT0003900 Physcomitrella patens miR1211-5p 12 80
mmu-miR-760-5p MIMAT0017245 Mus musculus miR-760-5p 12 80
hsa-miR-149-3p MIMAT0004609 Homo sapiens miR-149-3p 12 80
>hbv-miR-B14RC-3p MIMAT0031772 Herpes B miR-B14RC-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagggg 7
|||||||
Sbjct: 2 ggagggg 8
>mdo-miR-7327-5p MIMAT0028656 Monodelphis domestica miR-7327-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagggg 7
|||||||
Sbjct: 1 ggagggg 7
>hsa-miR-6887-3p MIMAT0027675 Homo sapiens miR-6887-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggagggg 7
|||||||
Sbjct: 8 ggagggg 2
>gga-miR-6547-3p MIMAT0025598 Gallus gallus miR-6547-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggagggg 7
|||||||
Sbjct: 8 ggagggg 2
>ame-miR-3776 MIMAT0018553 Apis mellifera miR-3776
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagggg 7
|||||||
Sbjct: 2 ggagggg 8
>hsa-miR-1914-3p MIMAT0007890 Homo sapiens miR-1914-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagggg 7
|||||||
Sbjct: 1 ggagggg 7
>lja-miR7533b MIMAT0029358 Lotus japonicus miR7533b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 1 gagggg 6
>lja-miR7533a MIMAT0029357 Lotus japonicus miR7533a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 1 gagggg 6
>lja-miR7520 MIMAT0029335 Lotus japonicus miR7520
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 1 gagggg 6
>mdo-miR-7366-5p MIMAT0028748 Monodelphis domestica miR-7366-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>mdo-miR-7319-5p MIMAT0028638 Monodelphis domestica miR-7319-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 6 gagggg 1
>mmu-miR-7235-5p MIMAT0028438 Mus musculus miR-7235-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>mml-miR-7205-5p MIMAT0028376 Macaca mulatta miR-7205-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 3 gagggg 8
>mmu-miR-7072-5p MIMAT0028050 Mus musculus miR-7072-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 1 gagggg 6
>mmu-miR-7070-5p MIMAT0028046 Mus musculus miR-7070-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 3 gagggg 8
>mmu-miR-7058-5p MIMAT0028020 Mus musculus miR-7058-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 3 gagggg 8
>mmu-miR-7020-3p MIMAT0027945 Mus musculus miR-7020-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 8 gagggg 3
>mmu-miR-6927-5p MIMAT0027754 Mus musculus miR-6927-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 3 gagggg 8
>hsa-miR-6883-5p MIMAT0027666 Homo sapiens miR-6883-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>hsa-miR-6826-3p MIMAT0027553 Homo sapiens miR-6826-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 8 gagggg 3
>hsa-miR-6785-5p MIMAT0027470 Homo sapiens miR-6785-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>hsa-miR-6734-5p MIMAT0027369 Homo sapiens miR-6734-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 3 gagggg 8
>hsa-miR-6515-5p MIMAT0025486 Homo sapiens miR-6515-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>hco-miR-5940 MIMAT0023435 Haemonchus contortus miR-5940
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>aca-miR-5415 MIMAT0022035 Anolis carolinensis miR-5415
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 6 gagggg 1
>hsa-miR-4779 MIMAT0019938 Homo sapiens miR-4779
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>hsa-miR-4749-3p MIMAT0019886 Homo sapiens miR-4749-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 8 gagggg 3
>hsa-miR-4728-5p MIMAT0019849 Homo sapiens miR-4728-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>hsa-miR-4290 MIMAT0016921 Homo sapiens miR-4290
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaggg 6
||||||
Sbjct: 8 ggaggg 3
>mmu-miR-3103-5p MIMAT0014937 Mus musculus miR-3103-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>bmo-miR-2756-3p MIMAT0013624 Bombyx mori miR-2756-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 6 gagggg 1
>bta-miR-2422 MIMAT0011989 Bos taurus miR-2422
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 3 gagggg 8
>bta-miR-2389 MIMAT0011942 Bos taurus miR-2389
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 1 gagggg 6
>bta-miR-2328-5p MIMAT0011857 Bos taurus miR-2328-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 8 gagggg 3
>gga-miR-2127 MIMAT0011203 Gallus gallus miR-2127
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>bta-miR-760-5p MIMAT0009372 Bos taurus miR-760-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 6 gagggg 1
>gga-miR-1611 MIMAT0007477 Gallus gallus miR-1611
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>gga-miR-1599 MIMAT0007465 Gallus gallus miR-1599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>oan-miR-802-3p MIMAT0007182 Ornithorhynchus anatinus miR-802-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>oan-miR-1343-5p MIMAT0006874 Ornithorhynchus anatinus
miR-1343-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggg 7
||||||
Sbjct: 1 gagggg 6
>rno-miR-760-5p MIMAT0005336 Rattus norvegicus miR-760-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 6 gagggg 1
>mdv2-miR-M19-5p MIMAT0012541 Mareks disease miR-M19-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 6 gagggg 1
>ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 7 gagggg 2
>ppt-miR1211-5p MIMAT0003900 Physcomitrella patens miR1211-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>mmu-miR-760-5p MIMAT0017245 Mus musculus miR-760-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggg 7
||||||
Sbjct: 6 gagggg 1
>hsa-miR-149-3p MIMAT0004609 Homo sapiens miR-149-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 89
Number of extensions: 83
Number of successful extensions: 46
Number of sequences better than 100.0: 46
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 46
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)