BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blv-miR-b5-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pma-miR-4611 MIMAT0019645 Petromyzon marinus miR-4611 14 20
ssc-miR-9785-5p MIMAT0037002 Sus scrofa miR-9785-5p 12 80
tch-miR-296-3p MIMAT0036504 Tupaia chinensis miR-296-3p 12 80
gma-miR9757 MIMAT0036390 Glycine max miR9757 12 80
hsa-miR-7848-3p MIMAT0030423 Homo sapiens miR-7848-3p 12 80
mdo-miR-7398h-3p MIMAT0028933 Monodelphis domestica miR-7398h-3p 12 80
mdo-miR-7366-5p MIMAT0028748 Monodelphis domestica miR-7366-5p 12 80
mdo-miR-7327-5p MIMAT0028656 Monodelphis domestica miR-7327-5p 12 80
mmu-miR-7235-5p MIMAT0028438 Mus musculus miR-7235-5p 12 80
mmu-miR-7047-3p MIMAT0027999 Mus musculus miR-7047-3p 12 80
mmu-miR-7017-5p MIMAT0027938 Mus musculus miR-7017-5p 12 80
hsa-miR-6887-3p MIMAT0027675 Homo sapiens miR-6887-3p 12 80
hsa-miR-6883-5p MIMAT0027666 Homo sapiens miR-6883-5p 12 80
hsa-miR-6865-3p MIMAT0027631 Homo sapiens miR-6865-3p 12 80
hsa-miR-6785-5p MIMAT0027470 Homo sapiens miR-6785-5p 12 80
gga-miR-6547-3p MIMAT0025598 Gallus gallus miR-6547-3p 12 80
hsa-miR-6515-5p MIMAT0025486 Homo sapiens miR-6515-5p 12 80
cgr-miR-296 MIMAT0023880 Cricetulus griseus miR-296 12 80
hco-miR-5940 MIMAT0023435 Haemonchus contortus miR-5940 12 80
hsa-miR-4779 MIMAT0019938 Homo sapiens miR-4779 12 80
hsa-miR-4728-5p MIMAT0019849 Homo sapiens miR-4728-5p 12 80
hsa-miR-4655-3p MIMAT0019722 Homo sapiens miR-4655-3p 12 80
hsa-miR-4290 MIMAT0016921 Homo sapiens miR-4290 12 80
ahy-miR3508 MIMAT0016330 Arachis hypogaea miR3508 12 80
ppy-miR-296-3p MIMAT0015810 Pongo pygmaeus miR-296-3p 12 80
mmu-miR-3103-5p MIMAT0014937 Mus musculus miR-3103-5p 12 80
eca-miR-296 MIMAT0013107 Equus caballus miR-296 12 80
gga-miR-2127 MIMAT0011203 Gallus gallus miR-2127 12 80
nve-miR-2043a-3p MIMAT0009811 Nematostella vectensis miR-2043a-3p 12 80
bta-miR-296-3p MIMAT0009273 Bos taurus miR-296-3p 12 80
dvi-miR-306-3p MIMAT0008914 Drosophila virilis miR-306-3p 12 80
dmo-miR-306-3p MIMAT0008649 Drosophila mojavensis miR-306-3p 12 80
ptr-miR-296 MIMAT0008079 Pan troglodytes miR-296 12 80
ptr-miR-1182 MIMAT0007950 Pan troglodytes miR-1182 12 80
hsa-miR-1914-3p MIMAT0007890 Homo sapiens miR-1914-3p 12 80
mml-miR-616 MIMAT0006467 Macaca mulatta miR-616 12 80
mml-miR-296-3p MIMAT0006252 Macaca mulatta miR-296-3p 12 80
gga-miR-1611 MIMAT0007477 Gallus gallus miR-1611 12 80
gga-miR-1599 MIMAT0007465 Gallus gallus miR-1599 12 80
oan-miR-802-3p MIMAT0007182 Ornithorhynchus anatinus miR-802-3p 12 80
hsa-miR-1182 MIMAT0005827 Homo sapiens miR-1182 12 80
ppt-miR1211-5p MIMAT0003900 Physcomitrella patens miR1211-5p 12 80
dre-miR-430i-5p MIMAT0032003 Danio rerio miR-430i-5p 12 80
dre-miR-430a-17-5p MIMAT0032002 Danio rerio miR-430a-17-5p 12 80
dre-miR-430a-16-5p MIMAT0032001 Danio rerio miR-430a-16-5p 12 80
dre-miR-430a-15-5p MIMAT0032000 Danio rerio miR-430a-15-5p 12 80
dre-miR-430a-14-5p MIMAT0031999 Danio rerio miR-430a-14-5p 12 80
dre-miR-430a-13-5p MIMAT0031998 Danio rerio miR-430a-13-5p 12 80
dre-miR-430a-12-5p MIMAT0031997 Danio rerio miR-430a-12-5p 12 80
dre-miR-430a-11-5p MIMAT0031996 Danio rerio miR-430a-11-5p 12 80
dre-miR-430a-4-5p MIMAT0031995 Danio rerio miR-430a-4-5p 12 80
dre-miR-430a-5p MIMAT0031994 Danio rerio miR-430a-5p 12 80
rno-miR-296-3p MIMAT0004742 Rattus norvegicus miR-296-3p 12 80
hsa-miR-296-3p MIMAT0004679 Homo sapiens miR-296-3p 12 80
hsa-miR-149-3p MIMAT0004609 Homo sapiens miR-149-3p 12 80
mmu-miR-296-3p MIMAT0004576 Mus musculus miR-296-3p 12 80
>pma-miR-4611 MIMAT0019645 Petromyzon marinus miR-4611
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagggt 7
|||||||
Sbjct: 2 ggagggt 8
>ssc-miR-9785-5p MIMAT0037002 Sus scrofa miR-9785-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>tch-miR-296-3p MIMAT0036504 Tupaia chinensis miR-296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>gma-miR9757 MIMAT0036390 Glycine max miR9757
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 8 gagggt 3
>hsa-miR-7848-3p MIMAT0030423 Homo sapiens miR-7848-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 8 gagggt 3
>mdo-miR-7398h-3p MIMAT0028933 Monodelphis domestica
miR-7398h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 8 gagggt 3
>mdo-miR-7366-5p MIMAT0028748 Monodelphis domestica miR-7366-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>mdo-miR-7327-5p MIMAT0028656 Monodelphis domestica miR-7327-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>mmu-miR-7235-5p MIMAT0028438 Mus musculus miR-7235-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>mmu-miR-7047-3p MIMAT0027999 Mus musculus miR-7047-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 8 gagggt 3
>mmu-miR-7017-5p MIMAT0027938 Mus musculus miR-7017-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 2 gagggt 7
>hsa-miR-6887-3p MIMAT0027675 Homo sapiens miR-6887-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaggg 6
||||||
Sbjct: 8 ggaggg 3
>hsa-miR-6883-5p MIMAT0027666 Homo sapiens miR-6883-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>hsa-miR-6865-3p MIMAT0027631 Homo sapiens miR-6865-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 8 gagggt 3
>hsa-miR-6785-5p MIMAT0027470 Homo sapiens miR-6785-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>gga-miR-6547-3p MIMAT0025598 Gallus gallus miR-6547-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaggg 6
||||||
Sbjct: 8 ggaggg 3
>hsa-miR-6515-5p MIMAT0025486 Homo sapiens miR-6515-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>cgr-miR-296 MIMAT0023880 Cricetulus griseus miR-296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>hco-miR-5940 MIMAT0023435 Haemonchus contortus miR-5940
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>hsa-miR-4779 MIMAT0019938 Homo sapiens miR-4779
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>hsa-miR-4728-5p MIMAT0019849 Homo sapiens miR-4728-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>hsa-miR-4655-3p MIMAT0019722 Homo sapiens miR-4655-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>hsa-miR-4290 MIMAT0016921 Homo sapiens miR-4290
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggaggg 6
||||||
Sbjct: 8 ggaggg 3
>ahy-miR3508 MIMAT0016330 Arachis hypogaea miR3508
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 3 gagggt 8
>ppy-miR-296-3p MIMAT0015810 Pongo pygmaeus miR-296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>mmu-miR-3103-5p MIMAT0014937 Mus musculus miR-3103-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>eca-miR-296 MIMAT0013107 Equus caballus miR-296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>gga-miR-2127 MIMAT0011203 Gallus gallus miR-2127
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>nve-miR-2043a-3p MIMAT0009811 Nematostella vectensis
miR-2043a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 7 gagggt 2
>bta-miR-296-3p MIMAT0009273 Bos taurus miR-296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>dvi-miR-306-3p MIMAT0008914 Drosophila virilis miR-306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>dmo-miR-306-3p MIMAT0008649 Drosophila mojavensis miR-306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>ptr-miR-296 MIMAT0008079 Pan troglodytes miR-296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>ptr-miR-1182 MIMAT0007950 Pan troglodytes miR-1182
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>hsa-miR-1914-3p MIMAT0007890 Homo sapiens miR-1914-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>mml-miR-616 MIMAT0006467 Macaca mulatta miR-616
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 8 gagggt 3
>mml-miR-296-3p MIMAT0006252 Macaca mulatta miR-296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>gga-miR-1611 MIMAT0007477 Gallus gallus miR-1611
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>gga-miR-1599 MIMAT0007465 Gallus gallus miR-1599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 1 ggaggg 6
>oan-miR-802-3p MIMAT0007182 Ornithorhynchus anatinus miR-802-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>hsa-miR-1182 MIMAT0005827 Homo sapiens miR-1182
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>ppt-miR1211-5p MIMAT0003900 Physcomitrella patens miR1211-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>dre-miR-430i-5p MIMAT0032003 Danio rerio miR-430i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>dre-miR-430a-17-5p MIMAT0032002 Danio rerio miR-430a-17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>dre-miR-430a-16-5p MIMAT0032001 Danio rerio miR-430a-16-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>dre-miR-430a-15-5p MIMAT0032000 Danio rerio miR-430a-15-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>dre-miR-430a-14-5p MIMAT0031999 Danio rerio miR-430a-14-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>dre-miR-430a-13-5p MIMAT0031998 Danio rerio miR-430a-13-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>dre-miR-430a-12-5p MIMAT0031997 Danio rerio miR-430a-12-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>dre-miR-430a-11-5p MIMAT0031996 Danio rerio miR-430a-11-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>dre-miR-430a-4-5p MIMAT0031995 Danio rerio miR-430a-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>dre-miR-430a-5p MIMAT0031994 Danio rerio miR-430a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagggt 7
||||||
Sbjct: 6 gagggt 1
>rno-miR-296-3p MIMAT0004742 Rattus norvegicus miR-296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>hsa-miR-296-3p MIMAT0004679 Homo sapiens miR-296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
>hsa-miR-149-3p MIMAT0004609 Homo sapiens miR-149-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggaggg 6
||||||
Sbjct: 3 ggaggg 8
>mmu-miR-296-3p MIMAT0004576 Mus musculus miR-296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagggt 7
||||||
Sbjct: 1 gagggt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 81
Number of extensions: 80
Number of successful extensions: 56
Number of sequences better than 100.0: 56
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 56
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
