BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sly-miR482d-5p MIMAT0035459 Solanum lycopersicum miR482d-5p 14 20
mmu-miR-7004-3p MIMAT0027913 Mus musculus miR-7004-3p 14 20
stu-miR482b-5p MIMAT0031160 Solanum tuberosum miR482b-5p 14 20
hsa-miR-4481 MIMAT0019015 Homo sapiens miR-4481 14 20
csi-miR3948 MIMAT0018488 Citrus sinensis miR3948 14 20
cre-miR1171 MIMAT0005430 Chlamydomonas reinhardtii miR1171 14 20
ata-miR9677-5p MIMAT0037224 Aegilops tauschii miR9677-5p 12 80
chi-miR-483 MIMAT0036243 Capra hircus miR-483 12 80
chi-miR-2411-5p MIMAT0036093 Capra hircus miR-2411-5p 12 80
efu-miR-9354 MIMAT0035141 Eptesicus fuscus miR-9354 12 80
eca-miR-9034 MIMAT0034576 Equus caballus miR-9034 12 80
eca-miR-9003 MIMAT0034543 Equus caballus miR-9003 12 80
str-miR-8365-5p MIMAT0033302 Strongyloides ratti miR-8365-5p 12 80
cel-miR-2217b-5p MIMAT0032841 Caenorhabditis elegans miR-2217b-5p 12 80
hsa-miR-4433b-3p MIMAT0030414 Homo sapiens miR-4433b-3p 12 80
rgl-miR7802 MIMAT0032243 Rehmannia glutinosa miR7802 12 80
rgl-miR7798 MIMAT0032239 Rehmannia glutinosa miR7798 12 80
mtr-miR7700-5p MIMAT0030000 Medicago truncatula miR7700-5p 12 80
mmu-miR-7687-3p MIMAT0029903 Mus musculus miR-7687-3p 12 80
mdo-miR-7322-3p MIMAT0028645 Monodelphis domestica miR-7322-3p 12 80
hsa-miR-6849-5p MIMAT0027598 Homo sapiens miR-6849-5p 12 80
hsa-miR-6777-3p MIMAT0027455 Homo sapiens miR-6777-3p 12 80
ptc-miR6468-3p MIMAT0025201 Populus trichocarpa miR6468-3p 12 80
mml-miR-1296-3p MIMAT0027114 Macaca mulatta miR-1296-3p 12 80
cgr-miR-702 MIMAT0024000 Cricetulus griseus miR-702 12 80
cgr-miR-1285 MIMAT0023748 Cricetulus griseus miR-1285 12 80
osa-miR5816 MIMAT0023288 Oryza sativa miR5816 12 80
bdi-miR398b MIMAT0020726 Brachypodium distachyon miR398b 12 80
hsa-miR-4758-5p MIMAT0019903 Homo sapiens miR-4758-5p 12 80
dme-miR-3642-5p MIMAT0018057 Drosophila melanogaster miR-3642-5p 12 80
ssc-miR-1296-3p MIMAT0017976 Sus scrofa miR-1296-3p 12 80
rno-miR-702-5p MIMAT0017884 Rattus norvegicus miR-702-5p 12 80
aly-miR3446-3p MIMAT0017728 Arabidopsis lyrata miR3446-3p 12 80
aly-miR398a-5p MIMAT0017565 Arabidopsis lyrata miR398a-5p 12 80
mmu-miR-3102-5p MIMAT0014933 Mus musculus miR-3102-5p 12 80
tgu-miR-2957 MIMAT0014455 Taeniopygia guttata miR-2957 12 80
eca-miR-1244 MIMAT0012888 Equus caballus miR-1244 12 80
dps-miR-2571-5p MIMAT0012412 Drosophila pseudoobscura miR-2571-5p 12 80
dps-miR-2546-5p MIMAT0012352 Drosophila pseudoobscura miR-2546-5p 12 80
bta-miR-2461-5p MIMAT0012047 Bos taurus miR-2461-5p 12 80
cel-miR-2217a-5p MIMAT0011451 Caenorhabditis elegans miR-2217a-5p 12 80
sme-miR-1175-5p MIMAT0012147 Schmidtea mediterranea miR-1175-5p 12 80
bol-miR398a-5p MIMAT0010173 Brassica oleracea miR398a-5p 12 80
gga-miR-1648-3p MIMAT0007525 Gallus gallus miR-1648-3p 12 80
hsa-miR-1238-5p MIMAT0022947 Homo sapiens miR-1238-5p 12 80
ppt-miR1023d-5p MIMAT0005108 Physcomitrella patens miR1023d-5p 12 80
ppt-miR1023c-5p MIMAT0005106 Physcomitrella patens miR1023c-5p 12 80
mtr-miR398a-5p MIMAT0022935 Medicago truncatula miR398a-5p 12 80
mmu-miR-702-5p MIMAT0022931 Mus musculus miR-702-5p 12 80
hsa-miR-1296-3p MIMAT0026637 Homo sapiens miR-1296-3p 12 80
rno-miR-483-3p MIMAT0003121 Rattus norvegicus miR-483-3p 12 80
ath-miR398a-5p MIMAT0031910 Arabidopsis thaliana miR398a-5p 12 80
>sly-miR482d-5p MIMAT0035459 Solanum lycopersicum miR482d-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagtgg 7
|||||||
Sbjct: 1 ggagtgg 7
>mmu-miR-7004-3p MIMAT0027913 Mus musculus miR-7004-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggagtgg 7
|||||||
Sbjct: 8 ggagtgg 2
>stu-miR482b-5p MIMAT0031160 Solanum tuberosum miR482b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagtgg 7
|||||||
Sbjct: 1 ggagtgg 7
>hsa-miR-4481 MIMAT0019015 Homo sapiens miR-4481
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagtgg 7
|||||||
Sbjct: 1 ggagtgg 7
>csi-miR3948 MIMAT0018488 Citrus sinensis miR3948
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagtgg 7
|||||||
Sbjct: 2 ggagtgg 8
>cre-miR1171 MIMAT0005430 Chlamydomonas reinhardtii miR1171
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggagtgg 7
|||||||
Sbjct: 2 ggagtgg 8
>ata-miR9677-5p MIMAT0037224 Aegilops tauschii miR9677-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtgg 7
||||||
Sbjct: 8 gagtgg 3
>chi-miR-483 MIMAT0036243 Capra hircus miR-483
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagtg 6
||||||
Sbjct: 6 ggagtg 1
>chi-miR-2411-5p MIMAT0036093 Capra hircus miR-2411-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 3 ggagtg 8
>efu-miR-9354 MIMAT0035141 Eptesicus fuscus miR-9354
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 3 ggagtg 8
>eca-miR-9034 MIMAT0034576 Equus caballus miR-9034
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtgg 7
||||||
Sbjct: 6 gagtgg 1
>eca-miR-9003 MIMAT0034543 Equus caballus miR-9003
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtgg 7
||||||
Sbjct: 8 gagtgg 3
>str-miR-8365-5p MIMAT0033302 Strongyloides ratti miR-8365-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagtg 6
||||||
Sbjct: 6 ggagtg 1
>cel-miR-2217b-5p MIMAT0032841 Caenorhabditis elegans
miR-2217b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 3 gagtgg 8
>hsa-miR-4433b-3p MIMAT0030414 Homo sapiens miR-4433b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 3 ggagtg 8
>rgl-miR7802 MIMAT0032243 Rehmannia glutinosa miR7802
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 3 ggagtg 8
>rgl-miR7798 MIMAT0032239 Rehmannia glutinosa miR7798
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 3 ggagtg 8
>mtr-miR7700-5p MIMAT0030000 Medicago truncatula miR7700-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 3 ggagtg 8
>mmu-miR-7687-3p MIMAT0029903 Mus musculus miR-7687-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtgg 7
||||||
Sbjct: 6 gagtgg 1
>mdo-miR-7322-3p MIMAT0028645 Monodelphis domestica miR-7322-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 1 gagtgg 6
>hsa-miR-6849-5p MIMAT0027598 Homo sapiens miR-6849-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 1 gagtgg 6
>hsa-miR-6777-3p MIMAT0027455 Homo sapiens miR-6777-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtgg 7
||||||
Sbjct: 7 gagtgg 2
>ptc-miR6468-3p MIMAT0025201 Populus trichocarpa miR6468-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 1 ggagtg 6
>mml-miR-1296-3p MIMAT0027114 Macaca mulatta miR-1296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 1 gagtgg 6
>cgr-miR-702 MIMAT0024000 Cricetulus griseus miR-702
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 3 gagtgg 8
>cgr-miR-1285 MIMAT0023748 Cricetulus griseus miR-1285
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagtg 6
||||||
Sbjct: 8 ggagtg 3
>osa-miR5816 MIMAT0023288 Oryza sativa miR5816
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 3 ggagtg 8
>bdi-miR398b MIMAT0020726 Brachypodium distachyon miR398b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 3 ggagtg 8
>hsa-miR-4758-5p MIMAT0019903 Homo sapiens miR-4758-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 3 gagtgg 8
>dme-miR-3642-5p MIMAT0018057 Drosophila melanogaster
miR-3642-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 3 gagtgg 8
>ssc-miR-1296-3p MIMAT0017976 Sus scrofa miR-1296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 1 gagtgg 6
>rno-miR-702-5p MIMAT0017884 Rattus norvegicus miR-702-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 3 gagtgg 8
>aly-miR3446-3p MIMAT0017728 Arabidopsis lyrata miR3446-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtgg 7
||||||
Sbjct: 8 gagtgg 3
>aly-miR398a-5p MIMAT0017565 Arabidopsis lyrata miR398a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 1 ggagtg 6
>mmu-miR-3102-5p MIMAT0014933 Mus musculus miR-3102-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 3 gagtgg 8
>tgu-miR-2957 MIMAT0014455 Taeniopygia guttata miR-2957
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 3 ggagtg 8
>eca-miR-1244 MIMAT0012888 Equus caballus miR-1244
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 1 gagtgg 6
>dps-miR-2571-5p MIMAT0012412 Drosophila pseudoobscura
miR-2571-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 3 gagtgg 8
>dps-miR-2546-5p MIMAT0012352 Drosophila pseudoobscura
miR-2546-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 3 gagtgg 8
>bta-miR-2461-5p MIMAT0012047 Bos taurus miR-2461-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtgg 7
||||||
Sbjct: 6 gagtgg 1
>cel-miR-2217a-5p MIMAT0011451 Caenorhabditis elegans
miR-2217a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 3 gagtgg 8
>sme-miR-1175-5p MIMAT0012147 Schmidtea mediterranea miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 1 gagtgg 6
>bol-miR398a-5p MIMAT0010173 Brassica oleracea miR398a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 1 ggagtg 6
>gga-miR-1648-3p MIMAT0007525 Gallus gallus miR-1648-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 3 ggagtg 8
>hsa-miR-1238-5p MIMAT0022947 Homo sapiens miR-1238-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 3 gagtgg 8
>ppt-miR1023d-5p MIMAT0005108 Physcomitrella patens miR1023d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtgg 7
||||||
Sbjct: 6 gagtgg 1
>ppt-miR1023c-5p MIMAT0005106 Physcomitrella patens miR1023c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtgg 7
||||||
Sbjct: 6 gagtgg 1
>mtr-miR398a-5p MIMAT0022935 Medicago truncatula miR398a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 1 ggagtg 6
>mmu-miR-702-5p MIMAT0022931 Mus musculus miR-702-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 3 gagtgg 8
>hsa-miR-1296-3p MIMAT0026637 Homo sapiens miR-1296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtgg 7
||||||
Sbjct: 1 gagtgg 6
>rno-miR-483-3p MIMAT0003121 Rattus norvegicus miR-483-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggagtg 6
||||||
Sbjct: 6 ggagtg 1
>ath-miR398a-5p MIMAT0031910 Arabidopsis thaliana miR398a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggagtg 6
||||||
Sbjct: 3 ggagtg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 111
Number of extensions: 105
Number of successful extensions: 52
Number of sequences better than 100.0: 52
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 52
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
