BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h11
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8693 MIMAT0034073 Gossypium raimondii miR8693 14 20
hvt-miR-H11 MIMAT0012876 Herpesvirus of miR-H11 14 20
mtr-miR2668 MIMAT0013475 Medicago truncatula miR2668 14 20
bra-miR9408-3p MIMAT0035658 Brassica rapa miR9408-3p 12 80
bdi-miR9494 MIMAT0035503 Brachypodium distachyon miR9494 12 80
nve-miR-9461 MIMAT0035422 Nematostella vectensis miR-9461 12 80
bol-miR9408 MIMAT0035363 Brassica oleracea miR9408 12 80
dme-miR-9371-3p MIMAT0035206 Drosophila melanogaster miR-9371-3p 12 80
efu-miR-9286 MIMAT0034940 Eptesicus fuscus miR-9286 12 80
efu-miR-9278 MIMAT0034916 Eptesicus fuscus miR-9278 12 80
eca-miR-8958 MIMAT0034492 Equus caballus miR-8958 12 80
gra-miR8773 MIMAT0034211 Gossypium raimondii miR8773 12 80
sma-miR-8467-3p MIMAT0033654 Schistosoma mansoni miR-8467-3p 12 80
ppc-miR-8312-3p MIMAT0033155 Pristionchus pacificus miR-8312-3p 12 80
mmu-miR-8104 MIMAT0031408 Mus musculus miR-8104 12 80
prd-miR-37-5p MIMAT0030566 Panagrellus redivivus miR-37-5p 12 80
rgl-miR7803b-5p MIMAT0032252 Rehmannia glutinosa miR7803b-5p 12 80
mtr-miR7698-5p MIMAT0029996 Medicago truncatula miR7698-5p 12 80
cbn-miR-7690 MIMAT0029942 Caenorhabditis brenneri miR-7690 12 80
cbn-miR-77 MIMAT0029778 Caenorhabditis brenneri miR-77 12 80
gga-miR-7445-3p MIMAT0029045 Gallus gallus miR-7445-3p 12 80
mdo-miR-7305-5p MIMAT0028604 Monodelphis domestica miR-7305-5p 12 80
dev-miR-D19-5p MIMAT0028194 Duck enteritis miR-D19-5p 12 80
mmu-miR-7093-5p MIMAT0028092 Mus musculus miR-7093-5p 12 80
mmu-miR-6960-5p MIMAT0027820 Mus musculus miR-6960-5p 12 80
hsa-miR-6870-3p MIMAT0027641 Homo sapiens miR-6870-3p 12 80
hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p 12 80
bta-miR-6121-3p MIMAT0024593 Bos taurus miR-6121-3p 12 80
hco-miR-5908-3p MIMAT0023363 Haemonchus contortus miR-5908-3p 12 80
osa-miR5529 MIMAT0022164 Oryza sativa miR5529 12 80
aca-miR-5417 MIMAT0022037 Anolis carolinensis miR-5417 12 80
mtr-miR5293 MIMAT0021359 Medicago truncatula miR5293 12 80
mtr-miR5253 MIMAT0021251 Medicago truncatula miR5253 12 80
hsa-miR-5196-3p MIMAT0021129 Homo sapiens miR-5196-3p 12 80
hsa-miR-5187-5p MIMAT0021117 Homo sapiens miR-5187-5p 12 80
mmu-miR-5103 MIMAT0020610 Mus musculus miR-5103 12 80
gma-miR5041-5p MIMAT0021070 Glycine max miR5041-5p 12 80
dme-miR-4971-5p MIMAT0020198 Drosophila melanogaster miR-4971-5p 12 80
cin-miR-4138-5p MIMAT0016735 Ciona intestinalis miR-4138-5p 12 80
cin-miR-4024-3p MIMAT0016540 Ciona intestinalis miR-4024-3p 12 80
ppy-miR-1255b MIMAT0016181 Pongo pygmaeus miR-1255b 12 80
bmo-miR-3224 MIMAT0015405 Bombyx mori miR-3224 12 80
hma-miR-3009 MIMAT0014677 Hydra magnipapillata miR-3009 12 80
dps-miR-2573-3p MIMAT0012417 Drosophila pseudoobscura miR-2573-3p 12 80
bta-miR-2418 MIMAT0011982 Bos taurus miR-2418 12 80
crm-miR-2228 MIMAT0011625 Caenorhabditis remanei miR-2228 12 80
crm-miR-77 MIMAT0011507 Caenorhabditis remanei miR-77 12 80
dvi-miR-278-5p MIMAT0032063 Drosophila virilis miR-278-5p 12 80
osa-miR812f MIMAT0007821 Oryza sativa miR812f 12 80
mml-miR-556-5p MIMAT0006424 Macaca mulatta miR-556-5p 12 80
gga-miR-1740-3p MIMAT0007644 Gallus gallus miR-1740-3p 12 80
ppt-miR414 MIMAT0004357 Physcomitrella patens miR414 12 80
osa-miR414 MIMAT0001330 Oryza sativa miR414 12 80
cbr-miR-77 MIMAT0000485 Caenorhabditis briggsae miR-77 12 80
dme-miR-278-5p MIMAT0020805 Drosophila melanogaster miR-278-5p 12 80
cel-miR-77-3p MIMAT0000049 Caenorhabditis elegans miR-77-3p 12 80
>gra-miR8693 MIMAT0034073 Gossypium raimondii miR8693
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggatgaa 7
|||||||
Sbjct: 2 ggatgaa 8
>hvt-miR-H11 MIMAT0012876 Herpesvirus of miR-H11
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggatgaa 7
|||||||
Sbjct: 2 ggatgaa 8
>mtr-miR2668 MIMAT0013475 Medicago truncatula miR2668
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggatgaa 7
|||||||
Sbjct: 7 ggatgaa 1
>bra-miR9408-3p MIMAT0035658 Brassica rapa miR9408-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 7 gatgaa 2
>bdi-miR9494 MIMAT0035503 Brachypodium distachyon miR9494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 6 gatgaa 1
>nve-miR-9461 MIMAT0035422 Nematostella vectensis miR-9461
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>bol-miR9408 MIMAT0035363 Brassica oleracea miR9408
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 8 gatgaa 3
>dme-miR-9371-3p MIMAT0035206 Drosophila melanogaster
miR-9371-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 8 gatgaa 3
>efu-miR-9286 MIMAT0034940 Eptesicus fuscus miR-9286
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 7 gatgaa 2
>efu-miR-9278 MIMAT0034916 Eptesicus fuscus miR-9278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatgaa 7
||||||
Sbjct: 3 gatgaa 8
>eca-miR-8958 MIMAT0034492 Equus caballus miR-8958
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 1 ggatga 6
>gra-miR8773 MIMAT0034211 Gossypium raimondii miR8773
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>sma-miR-8467-3p MIMAT0033654 Schistosoma mansoni miR-8467-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>ppc-miR-8312-3p MIMAT0033155 Pristionchus pacificus miR-8312-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 6 ggatga 1
>mmu-miR-8104 MIMAT0031408 Mus musculus miR-8104
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>prd-miR-37-5p MIMAT0030566 Panagrellus redivivus miR-37-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 1 ggatga 6
>rgl-miR7803b-5p MIMAT0032252 Rehmannia glutinosa miR7803b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 1 ggatga 6
>mtr-miR7698-5p MIMAT0029996 Medicago truncatula miR7698-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 8 gatgaa 3
>cbn-miR-7690 MIMAT0029942 Caenorhabditis brenneri miR-7690
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 8 ggatga 3
>cbn-miR-77 MIMAT0029778 Caenorhabditis brenneri miR-77
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 6 gatgaa 1
>gga-miR-7445-3p MIMAT0029045 Gallus gallus miR-7445-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 1 ggatga 6
>mdo-miR-7305-5p MIMAT0028604 Monodelphis domestica miR-7305-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 6 ggatga 1
>dev-miR-D19-5p MIMAT0028194 Duck enteritis miR-D19-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatgaa 7
||||||
Sbjct: 1 gatgaa 6
>mmu-miR-7093-5p MIMAT0028092 Mus musculus miR-7093-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>mmu-miR-6960-5p MIMAT0027820 Mus musculus miR-6960-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>hsa-miR-6870-3p MIMAT0027641 Homo sapiens miR-6870-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 8 ggatga 3
>hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 6 ggatga 1
>bta-miR-6121-3p MIMAT0024593 Bos taurus miR-6121-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>hco-miR-5908-3p MIMAT0023363 Haemonchus contortus miR-5908-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 6 gatgaa 1
>osa-miR5529 MIMAT0022164 Oryza sativa miR5529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 8 gatgaa 3
>aca-miR-5417 MIMAT0022037 Anolis carolinensis miR-5417
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 6 ggatga 1
>mtr-miR5293 MIMAT0021359 Medicago truncatula miR5293
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatgaa 7
||||||
Sbjct: 1 gatgaa 6
>mtr-miR5253 MIMAT0021251 Medicago truncatula miR5253
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatgaa 7
||||||
Sbjct: 1 gatgaa 6
>hsa-miR-5196-3p MIMAT0021129 Homo sapiens miR-5196-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 6 ggatga 1
>hsa-miR-5187-5p MIMAT0021117 Homo sapiens miR-5187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>mmu-miR-5103 MIMAT0020610 Mus musculus miR-5103
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 6 ggatga 1
>gma-miR5041-5p MIMAT0021070 Glycine max miR5041-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 7 gatgaa 2
>dme-miR-4971-5p MIMAT0020198 Drosophila melanogaster
miR-4971-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 1 ggatga 6
>cin-miR-4138-5p MIMAT0016735 Ciona intestinalis miR-4138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatgaa 7
||||||
Sbjct: 3 gatgaa 8
>cin-miR-4024-3p MIMAT0016540 Ciona intestinalis miR-4024-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 7 gatgaa 2
>ppy-miR-1255b MIMAT0016181 Pongo pygmaeus miR-1255b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 1 ggatga 6
>bmo-miR-3224 MIMAT0015405 Bombyx mori miR-3224
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 6 ggatga 1
>hma-miR-3009 MIMAT0014677 Hydra magnipapillata miR-3009
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 7 gatgaa 2
>dps-miR-2573-3p MIMAT0012417 Drosophila pseudoobscura
miR-2573-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 8 ggatga 3
>bta-miR-2418 MIMAT0011982 Bos taurus miR-2418
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>crm-miR-2228 MIMAT0011625 Caenorhabditis remanei miR-2228
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 6 ggatga 1
>crm-miR-77 MIMAT0011507 Caenorhabditis remanei miR-77
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 6 gatgaa 1
>dvi-miR-278-5p MIMAT0032063 Drosophila virilis miR-278-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>osa-miR812f MIMAT0007821 Oryza sativa miR812f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>mml-miR-556-5p MIMAT0006424 Macaca mulatta miR-556-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatgaa 7
||||||
Sbjct: 1 gatgaa 6
>gga-miR-1740-3p MIMAT0007644 Gallus gallus miR-1740-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 6 ggatga 1
>ppt-miR414 MIMAT0004357 Physcomitrella patens miR414
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 6 ggatga 1
>osa-miR414 MIMAT0001330 Oryza sativa miR414
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatga 6
||||||
Sbjct: 6 ggatga 1
>cbr-miR-77 MIMAT0000485 Caenorhabditis briggsae miR-77
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 6 gatgaa 1
>dme-miR-278-5p MIMAT0020805 Drosophila melanogaster miR-278-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatga 6
||||||
Sbjct: 3 ggatga 8
>cel-miR-77-3p MIMAT0000049 Caenorhabditis elegans miR-77-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatgaa 7
||||||
Sbjct: 6 gatgaa 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 82
Number of extensions: 79
Number of successful extensions: 56
Number of sequences better than 100.0: 56
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 56
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
