BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-5-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
str-miR-7880n-5p MIMAT0033368 Strongyloides ratti miR-7880n-5p 14 27
ppc-miR-8234-3p MIMAT0032923 Pristionchus pacificus miR-8234-3p 14 27
bdi-miR7717a-3p MIMAT0030157 Brachypodium distachyon miR7717a-3p 14 27
mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p 14 27
hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p 14 27
sbi-miR6220-5p MIMAT0026404 Sorghum bicolor miR6220-5p 14 27
hhv6b-miR-Ro6-4-5p MIMAT0026462 Human herpesvirus miR-Ro6-4-5p 14 27
hsa-miR-4534 MIMAT0019073 Homo sapiens miR-4534 14 27
aly-miR861-3p MIMAT0017652 Arabidopsis lyrata miR861-3p 14 27
bmo-miR-3206 MIMAT0015384 Bombyx mori miR-3206 14 27
hsa-miR-3134 MIMAT0015000 Homo sapiens miR-3134 14 27
dps-miR-2527 MIMAT0012317 Drosophila pseudoobscura miR-2527 14 27
ath-miR861-3p MIMAT0004306 Arabidopsis thaliana miR861-3p 14 27
sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p 14 27
>str-miR-7880n-5p MIMAT0033368 Strongyloides ratti miR-7880n-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggat 8
|||||||
Sbjct: 2 gatggat 8
>ppc-miR-8234-3p MIMAT0032923 Pristionchus pacificus miR-8234-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggatgga 7
|||||||
Sbjct: 8 ggatgga 2
>bdi-miR7717a-3p MIMAT0030157 Brachypodium distachyon
miR7717a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggat 8
|||||||
Sbjct: 1 gatggat 7
>mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggatgga 7
|||||||
Sbjct: 7 ggatgga 1
>hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatggat 8
|||||||
Sbjct: 8 gatggat 2
>sbi-miR6220-5p MIMAT0026404 Sorghum bicolor miR6220-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggatgga 7
|||||||
Sbjct: 8 ggatgga 2
>hhv6b-miR-Ro6-4-5p MIMAT0026462 Human herpesvirus miR-Ro6-4-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggatgga 7
|||||||
Sbjct: 2 ggatgga 8
>hsa-miR-4534 MIMAT0019073 Homo sapiens miR-4534
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggatgga 7
|||||||
Sbjct: 1 ggatgga 7
>aly-miR861-3p MIMAT0017652 Arabidopsis lyrata miR861-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggat 8
|||||||
Sbjct: 1 gatggat 7
>bmo-miR-3206 MIMAT0015384 Bombyx mori miR-3206
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatggat 8
|||||||
Sbjct: 8 gatggat 2
>hsa-miR-3134 MIMAT0015000 Homo sapiens miR-3134
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggat 8
|||||||
Sbjct: 2 gatggat 8
>dps-miR-2527 MIMAT0012317 Drosophila pseudoobscura miR-2527
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggat 8
|||||||
Sbjct: 2 gatggat 8
>ath-miR861-3p MIMAT0004306 Arabidopsis thaliana miR861-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggat 8
|||||||
Sbjct: 1 gatggat 7
>sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatggat 8
|||||||
Sbjct: 8 gatggat 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 144
Number of extensions: 130
Number of successful extensions: 95
Number of sequences better than 100.0: 14
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
